Wall clock time and date at job start Mon Mar 30 2020 06:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50703 * 109.46742 * 2 1 4 4 C 1.31695 * 122.55511 * 269.99409 * 3 2 1 5 5 C 1.50706 * 124.24159 * 0.02562 * 4 3 2 6 6 O 1.42899 * 109.46723 * 90.00149 * 5 4 3 7 7 S 1.75255 * 111.51892 * 180.02562 * 4 3 2 8 8 C 1.75999 * 92.25446 * 359.97438 * 7 4 3 9 9 C 1.40473 * 130.26731 * 180.02562 * 8 7 4 10 10 C 1.35670 * 120.82271 * 179.73534 * 9 8 7 11 11 C 1.41155 * 120.10921 * 0.52158 * 10 9 8 12 12 C 1.41275 * 120.06210 * 179.75531 * 11 10 9 13 13 H 1.07995 * 119.99907 * 154.83621 * 12 11 10 14 14 C 1.39862 * 120.00020 * 334.84223 * 12 11 10 15 15 N 1.30893 * 119.99729 * 342.25827 * 14 12 11 16 16 Si 1.86793 * 119.99851 * 162.25499 * 14 12 11 17 17 H 1.48501 * 109.47199 * 94.64991 * 16 14 12 18 18 H 1.48503 * 109.46977 * 214.64913 * 16 14 12 19 19 H 1.48504 * 109.47244 * 334.64759 * 16 14 12 20 20 C 1.39909 * 119.88132 * 359.48504 * 11 10 9 21 21 C 1.40150 * 109.56173 * 0.02562 * 8 7 4 22 22 H 1.08996 * 109.47819 * 300.00370 * 1 2 3 23 23 H 1.09003 * 109.46573 * 60.00887 * 1 2 3 24 24 H 1.09004 * 109.46916 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47819 * 239.99630 * 2 1 3 26 26 H 1.09003 * 109.46573 * 119.99113 * 2 1 3 27 27 H 1.08995 * 109.47072 * 210.00093 * 5 4 3 28 28 H 1.08999 * 109.46991 * 330.00209 * 5 4 3 29 29 H 0.96707 * 113.99768 * 180.02562 * 6 5 4 30 30 H 1.07998 * 119.58125 * 359.97438 * 9 8 7 31 31 H 1.08006 * 119.94305 * 180.27539 * 10 9 8 32 32 H 0.97003 * 119.99647 * 180.02562 * 15 14 12 33 33 H 1.07998 * 120.01061 * 180.23013 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2686 2.0890 -1.1100 5 6 2.0703 1.5293 -2.4952 6 8 0.7376 1.8020 -2.9327 7 16 2.8425 3.7106 -0.7745 8 6 2.7523 3.4574 0.9648 9 6 3.0588 4.3256 2.0258 10 6 2.9119 3.9275 3.3144 11 6 2.4565 2.6234 3.6051 12 6 2.3088 2.2082 4.9473 13 1 1.6125 1.4208 5.1955 14 6 3.0642 2.8169 5.9548 15 7 4.1340 3.5047 5.6456 16 14 2.5461 2.6483 7.7416 17 1 3.2734 1.5123 8.3627 18 1 2.8692 3.9009 8.4709 19 1 1.0841 2.3978 7.8116 20 6 2.1463 1.7446 2.5616 21 6 2.2934 2.1594 1.2270 22 1 -0.3634 0.5138 0.8899 23 1 -0.3632 0.5137 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8935 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8901 27 1 2.7797 1.9941 -3.1798 28 1 2.2340 0.4518 -2.4785 29 1 0.5386 1.4691 -3.8186 30 1 3.4122 5.3237 1.8129 31 1 3.1475 4.6082 4.1192 32 1 4.6581 3.9266 6.3444 33 1 1.7942 0.7477 2.7816 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396326883.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:02 Heat of formation + Delta-G solvation = -48.686028 kcal Electronic energy + Delta-G solvation = -16946.615012 eV Core-core repulsion = 14254.768792 eV Total energy + Delta-G solvation = -2691.846220 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.19536 -38.34692 -36.79682 -35.22820 -32.69261 -31.65221 -30.87395 -27.63010 -26.59120 -24.62699 -22.95369 -22.24363 -20.10107 -19.10879 -18.35819 -18.01759 -17.02905 -16.70687 -16.03898 -15.42482 -15.04355 -14.87096 -14.63259 -14.52921 -14.26183 -13.83516 -13.40579 -13.33764 -12.91899 -12.84277 -12.65574 -12.52741 -12.24870 -12.00735 -11.71879 -11.59408 -11.38992 -11.22799 -10.96118 -10.85505 -10.08251 -9.13728 -8.77214 -8.38701 -6.36731 0.12568 0.76568 0.92420 1.34792 1.38517 1.43785 1.53971 1.66095 2.19070 2.62370 3.51003 3.59732 3.94377 4.04963 4.21658 4.28698 4.38442 4.43983 4.57476 4.63861 4.85154 4.88939 4.96665 5.03755 5.05558 5.14042 5.29778 5.42654 5.49952 5.59815 5.68998 5.86560 5.98330 6.21312 6.52016 6.84787 6.86757 6.97675 8.26432 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.032028 B = 0.005579 C = 0.004901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.034029 B = 5017.530262 C = 5712.310175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.061 4.061 3 C -0.078 4.078 4 C -0.178 4.178 5 C 0.155 3.845 6 O -0.580 6.580 7 S 0.032 5.968 8 C -0.249 4.249 9 C -0.086 4.086 10 C -0.141 4.141 11 C 0.086 3.914 12 C -0.490 4.490 13 H 0.080 0.920 14 C 0.038 3.962 15 N -0.823 5.823 16 Si 0.985 3.015 17 H -0.261 1.261 18 H -0.265 1.265 19 H -0.258 1.258 20 C -0.224 4.224 21 C -0.049 4.049 22 H 0.031 0.969 23 H 0.060 0.940 24 H 0.079 0.921 25 H 0.095 0.905 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.400 0.600 30 H 0.111 0.889 31 H 0.116 0.884 32 H 0.292 0.708 33 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.092 -4.753 -10.673 12.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.100 4.100 3 C -0.092 4.092 4 C -0.293 4.293 5 C 0.076 3.924 6 O -0.390 6.390 7 S 0.295 5.705 8 C -0.363 4.363 9 C -0.108 4.108 10 C -0.162 4.162 11 C 0.082 3.918 12 C -0.519 4.519 13 H 0.098 0.902 14 C -0.178 4.178 15 N -0.449 5.449 16 Si 0.805 3.195 17 H -0.186 1.186 18 H -0.189 1.189 19 H -0.182 1.182 20 C -0.246 4.246 21 C -0.056 4.056 22 H 0.050 0.950 23 H 0.079 0.921 24 H 0.098 0.902 25 H 0.113 0.887 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.105 0.895 29 H 0.251 0.749 30 H 0.129 0.871 31 H 0.133 0.867 32 H 0.102 0.898 33 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.486 -3.118 -10.963 11.665 hybrid contribution -0.173 -0.977 1.469 1.773 sum -2.659 -4.094 -9.494 10.675 Atomic orbital electron populations 1.21655 0.93921 1.02308 1.01444 1.20319 0.96749 0.89964 1.03012 1.19929 1.00563 0.98422 0.90260 1.23552 1.09522 0.97264 0.98975 1.20433 0.84666 0.99334 0.87920 1.86565 1.29853 1.83225 1.39337 1.83073 1.73977 1.14602 0.98865 1.22304 1.17921 0.99627 0.96425 1.20024 1.01281 0.97882 0.91609 1.21049 1.03551 0.96774 0.94834 1.17793 0.89170 0.91112 0.93707 1.19795 1.21393 1.18967 0.91748 0.90160 1.26798 0.92654 0.92150 1.06207 1.69879 1.11546 1.25543 1.37882 0.85143 0.79905 0.79101 0.75305 1.18579 1.18889 1.18199 1.20830 1.14674 0.99006 0.90137 1.19200 0.99930 0.92639 0.93801 0.95007 0.92052 0.90226 0.88712 0.91881 0.91311 0.89479 0.74888 0.87140 0.86651 0.89755 0.88058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.85 9.89 71.98 0.71 -3.13 16 2 C -0.06 -1.87 5.78 29.85 0.17 -1.70 16 3 C -0.08 -3.03 5.23 -18.66 -0.10 -3.13 16 4 C -0.18 -6.28 6.00 25.00 0.15 -6.13 16 5 C 0.16 3.75 7.13 71.24 0.51 4.26 16 6 O -0.58 -13.51 13.37 -148.98 -1.99 -15.50 16 7 S 0.03 1.25 23.19 -56.49 -1.31 -0.06 16 8 C -0.25 -11.93 6.51 23.28 0.15 -11.78 16 9 C -0.09 -4.26 9.99 22.22 0.22 -4.04 16 10 C -0.14 -7.59 8.60 22.39 0.19 -7.39 16 11 C 0.09 4.72 5.55 -21.41 -0.12 4.60 16 12 C -0.49 -26.26 9.03 23.41 0.21 -26.04 16 13 H 0.08 4.14 7.90 -2.91 -0.02 4.11 16 14 C 0.04 1.86 5.13 85.23 0.44 2.30 16 15 N -0.82 -42.35 10.98 21.81 0.24 -42.11 16 16 Si 0.99 37.36 29.59 68.60 2.03 39.39 16 17 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 18 H -0.26 -9.52 7.11 99.48 0.71 -8.82 16 19 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 20 C -0.22 -11.53 9.52 23.23 0.22 -11.31 16 21 C -0.05 -2.37 6.01 -20.36 -0.12 -2.49 16 22 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.06 1.73 7.86 -2.39 -0.02 1.71 16 24 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.09 2.27 6.47 -2.39 -0.02 2.25 16 26 H 0.06 2.03 7.58 -2.39 -0.02 2.01 16 27 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.09 1.66 6.49 -2.39 -0.02 1.64 16 29 H 0.40 4.45 9.12 -74.05 -0.68 3.77 16 30 H 0.11 4.92 8.06 -2.91 -0.02 4.90 16 31 H 0.12 6.30 6.18 -2.91 -0.02 6.28 16 32 H 0.29 13.46 8.30 -92.71 -0.77 12.69 16 33 H 0.10 4.94 7.63 -2.91 -0.02 4.92 16 Total: -1.00 -64.45 292.83 2.07 -62.38 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: 0.46 Total: 21.89 kcal Atomic # 6 Polarization: -68.62 SS G_CDS: 2.64 Total: -65.99 kcal Atomic # 7 Polarization: -42.35 SS G_CDS: 0.24 Total: -42.11 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -1.99 Total: -15.50 kcal Atomic # 14 Polarization: 37.36 SS G_CDS: 2.03 Total: 39.39 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -1.31 Total: -0.06 kcal Total: -64.45 2.07 -62.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396326883.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.698 kcal (2) G-P(sol) polarization free energy of solvation -64.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds