Wall clock time and date at job start Mon Mar 30 2020 06:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 109.47371 * 2 1 4 4 C 1.41935 * 119.76116 * 90.00776 * 3 2 1 5 5 C 1.39794 * 128.53885 * 359.97438 * 4 3 2 6 6 C 1.36943 * 115.02846 * 179.97438 * 5 4 3 7 7 C 1.39926 * 124.83032 * 180.02562 * 6 5 4 8 8 H 1.07996 * 119.99728 * 0.02562 * 7 6 5 9 9 C 1.40183 * 119.99660 * 180.02562 * 7 6 5 10 10 N 1.30758 * 120.00540 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99669 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47018 * 60.00332 * 11 9 7 13 13 H 1.48502 * 109.47123 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47355 * 299.99906 * 11 9 7 15 15 S 1.75461 * 110.34094 * 0.02562 * 6 5 4 16 16 C 1.40332 * 118.58129 * 179.97438 * 4 3 2 17 17 C 1.39655 * 119.76792 * 0.02562 * 16 4 3 18 18 C 1.37657 * 120.28526 * 359.97388 * 17 16 4 19 19 C 1.35907 * 119.76420 * 270.27825 * 3 2 1 20 20 C 1.50699 * 119.67413 * 0.02562 * 19 3 2 21 21 O 1.42898 * 109.47280 * 180.28135 * 20 19 3 22 22 H 1.08998 * 109.47348 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46700 * 299.99636 * 1 2 3 24 24 H 1.08994 * 109.47294 * 59.99235 * 1 2 3 25 25 H 1.09004 * 109.46700 * 240.00364 * 2 1 3 26 26 H 1.09003 * 109.47041 * 120.00733 * 2 1 3 27 27 H 1.08007 * 122.48840 * 359.97052 * 5 4 3 28 28 H 0.96997 * 120.00209 * 179.97438 * 10 9 7 29 29 H 1.07996 * 119.85272 * 180.02562 * 17 16 4 30 30 H 1.08002 * 119.87889 * 180.02562 * 18 17 16 31 31 H 1.08997 * 109.47326 * 300.28268 * 20 19 3 32 32 H 1.09007 * 109.47247 * 60.27970 * 20 19 3 33 33 H 0.96702 * 114.00022 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2674 2.0850 1.2321 5 6 2.0948 1.5978 2.5310 6 6 2.4085 2.4825 3.5281 7 6 2.3127 2.2104 4.8973 8 1 1.9705 1.2426 5.2328 9 6 2.6609 3.1941 5.8334 10 7 3.0747 4.3660 5.4272 11 14 2.5337 2.8305 7.6613 12 1 3.4150 1.6845 8.0006 13 1 2.9559 4.0261 8.4343 14 1 1.1284 2.4923 8.0022 15 16 2.9477 4.0058 2.8445 16 6 2.7357 3.4076 1.2032 17 6 2.9583 4.0377 -0.0230 18 6 2.7209 3.3668 -1.2014 19 6 2.2519 2.0588 -1.1798 20 6 1.9899 1.3387 -2.4774 21 8 2.2973 2.2036 -3.5726 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 1.8932 -0.5138 -0.8901 26 1 1.8933 -0.5140 0.8899 27 1 1.7402 0.5978 2.7332 28 1 3.3152 5.0468 6.0749 29 1 3.3190 5.0553 -0.0469 30 1 2.8957 3.8603 -2.1461 31 1 2.6156 0.4478 -2.5313 32 1 0.9403 1.0489 -2.5267 33 1 2.1514 1.8049 -4.4415 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396327935.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:48 Heat of formation + Delta-G solvation = -64.722453 kcal Electronic energy + Delta-G solvation = -16958.957319 eV Core-core repulsion = 14266.415707 eV Total energy + Delta-G solvation = -2692.541611 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.51752 -37.75625 -36.61230 -35.05344 -34.68912 -31.26441 -30.19247 -27.45239 -26.64263 -24.40494 -23.39136 -21.67267 -20.46604 -19.54090 -18.26044 -17.55922 -16.93034 -16.30021 -15.93111 -15.64441 -15.42602 -14.67851 -14.59467 -14.20544 -14.18429 -13.96209 -13.38957 -13.26247 -13.11195 -12.92434 -12.60985 -12.42802 -12.09192 -11.99890 -11.94043 -11.62306 -11.28778 -11.21263 -10.84212 -10.81028 -9.87507 -9.12340 -8.89038 -8.17426 -6.52621 0.36016 0.67378 1.34602 1.35109 1.45257 1.51118 1.88611 1.92600 2.14398 2.85914 3.25598 3.46216 4.05013 4.11490 4.26264 4.40286 4.53897 4.59135 4.62857 4.67615 4.85940 4.91640 4.96228 5.07154 5.13621 5.19132 5.40494 5.50546 5.59549 5.61830 5.77817 5.89455 5.99707 6.10822 6.37701 6.55564 6.59436 7.04109 7.97229 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.034416 B = 0.005674 C = 0.004953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.372216 B = 4934.038842 C = 5652.018484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.072 4.072 3 C -0.118 4.118 4 C -0.001 4.001 5 C -0.382 4.382 6 C 0.027 3.973 7 C -0.418 4.418 8 H 0.102 0.898 9 C 0.017 3.983 10 N -0.803 5.803 11 Si 1.013 2.987 12 H -0.254 1.254 13 H -0.260 1.260 14 H -0.255 1.255 15 S 0.109 5.891 16 C -0.290 4.290 17 C -0.078 4.078 18 C -0.165 4.165 19 C -0.088 4.088 20 C 0.131 3.869 21 O -0.584 6.584 22 H 0.077 0.923 23 H 0.030 0.970 24 H 0.059 0.941 25 H 0.087 0.913 26 H 0.053 0.947 27 H 0.105 0.895 28 H 0.311 0.689 29 H 0.113 0.887 30 H 0.130 0.870 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.211 -4.751 -6.814 8.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.109 4.109 3 C -0.120 4.120 4 C -0.009 4.009 5 C -0.407 4.407 6 C -0.092 4.092 7 C -0.451 4.451 8 H 0.120 0.880 9 C -0.202 4.202 10 N -0.429 5.429 11 Si 0.831 3.169 12 H -0.178 1.178 13 H -0.184 1.184 14 H -0.179 1.179 15 S 0.369 5.631 16 C -0.404 4.404 17 C -0.100 4.100 18 C -0.186 4.186 19 C -0.091 4.091 20 C 0.054 3.946 21 O -0.393 6.393 22 H 0.096 0.904 23 H 0.049 0.951 24 H 0.078 0.922 25 H 0.106 0.894 26 H 0.072 0.928 27 H 0.123 0.877 28 H 0.125 0.875 29 H 0.131 0.869 30 H 0.148 0.852 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -1.514 -2.785 -5.639 6.469 hybrid contribution -0.489 -1.442 -0.113 1.527 sum -2.003 -4.227 -5.751 7.414 Atomic orbital electron populations 1.21645 0.94352 1.02118 1.01205 1.20399 0.96562 0.91698 1.02275 1.19383 1.04857 0.97295 0.90490 1.18095 0.96606 0.92491 0.93684 1.19644 1.28966 1.01616 0.90430 1.21768 0.95324 0.94723 0.97426 1.19616 1.35142 1.01095 0.89292 0.88026 1.27294 0.91318 0.93176 1.08364 1.68688 1.29063 1.04916 1.40268 0.84742 0.80406 0.79517 0.72253 1.17841 1.18354 1.17859 1.84544 1.71558 1.15951 0.91044 1.23922 1.14964 1.00346 1.01190 1.20457 1.00178 0.98799 0.90601 1.20596 1.05757 0.95569 0.96657 1.19178 1.00910 0.95020 0.93947 1.20838 0.99732 0.90934 0.83068 1.86441 1.90898 1.44172 1.17793 0.90403 0.95050 0.92211 0.89433 0.92812 0.87736 0.87545 0.86890 0.85217 0.91124 0.91097 0.75139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.00 9.89 71.98 0.71 -3.29 16 2 C -0.07 -2.40 5.39 29.85 0.16 -2.24 16 3 C -0.12 -4.97 5.17 -19.49 -0.10 -5.07 16 4 C 0.00 -0.05 5.82 -21.48 -0.13 -0.18 16 5 C -0.38 -20.31 9.56 22.34 0.21 -20.10 16 6 C 0.03 1.47 6.11 22.37 0.14 1.61 16 7 C -0.42 -21.60 9.27 23.15 0.21 -21.38 16 8 H 0.10 4.94 7.85 -2.91 -0.02 4.92 16 9 C 0.02 0.79 5.50 85.33 0.47 1.26 16 10 N -0.80 -38.83 10.58 21.87 0.23 -38.60 16 11 Si 1.01 34.58 29.56 68.60 2.03 36.60 16 12 H -0.25 -8.43 7.11 99.48 0.71 -7.73 16 13 H -0.26 -8.24 7.11 99.48 0.71 -7.54 16 14 H -0.25 -8.44 7.11 99.48 0.71 -7.73 16 15 S 0.11 5.79 20.13 -56.49 -1.14 4.65 16 16 C -0.29 -14.88 6.48 23.12 0.15 -14.73 16 17 C -0.08 -3.55 10.07 22.47 0.23 -3.33 16 18 C -0.17 -6.80 9.36 22.31 0.21 -6.60 16 19 C -0.09 -3.39 5.83 -20.23 -0.12 -3.51 16 20 C 0.13 3.55 6.09 71.24 0.43 3.98 16 21 O -0.58 -14.64 12.11 -148.98 -1.80 -16.45 16 22 H 0.08 1.80 8.14 -2.39 -0.02 1.79 16 23 H 0.03 1.08 8.14 -2.38 -0.02 1.06 16 24 H 0.06 1.60 7.24 -2.39 -0.02 1.58 16 25 H 0.09 2.32 6.52 -2.38 -0.02 2.31 16 26 H 0.05 1.93 7.13 -2.39 -0.02 1.91 16 27 H 0.10 5.35 7.36 -2.91 -0.02 5.32 16 28 H 0.31 13.31 8.29 -92.71 -0.77 12.54 16 29 H 0.11 4.68 8.06 -2.91 -0.02 4.65 16 30 H 0.13 4.85 6.98 -2.91 -0.02 4.83 16 31 H 0.07 1.64 7.40 -2.39 -0.02 1.63 16 32 H 0.07 1.66 7.21 -2.38 -0.02 1.64 16 33 H 0.40 5.18 9.12 -74.06 -0.68 4.51 16 Total: -1.00 -64.03 287.68 2.37 -61.67 By element: Atomic # 1 Polarization: 25.23 SS G_CDS: 0.46 Total: 25.69 kcal Atomic # 6 Polarization: -76.15 SS G_CDS: 2.58 Total: -73.57 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.23 Total: -38.60 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -1.80 Total: -16.45 kcal Atomic # 14 Polarization: 34.58 SS G_CDS: 2.03 Total: 36.60 kcal Atomic # 16 Polarization: 5.79 SS G_CDS: -1.14 Total: 4.65 kcal Total: -64.03 2.37 -61.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396327935.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.055 kcal (2) G-P(sol) polarization free energy of solvation -64.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds