Wall clock time and date at job start Mon Mar 30 2020 06:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35658 * 117.00136 * 2 1 4 4 C 1.37810 * 119.80575 * 359.97438 * 3 2 1 5 5 C 1.41367 * 121.85811 * 179.97438 * 4 3 2 6 6 C 1.45416 * 128.54996 * 180.02562 * 5 4 3 7 7 C 1.31951 * 114.99303 * 180.02562 * 6 5 4 8 8 S 1.75281 * 111.35714 * 359.97438 * 7 6 5 9 9 C 1.39744 * 119.76593 * 0.04009 * 5 4 3 10 10 C 1.42101 * 120.00785 * 359.97438 * 9 5 4 11 11 C 1.40099 * 120.41505 * 180.02562 * 10 9 5 12 12 H 1.08002 * 120.00262 * 135.99195 * 11 10 9 13 13 C 1.40447 * 120.00003 * 315.99696 * 11 10 9 14 14 N 1.30559 * 120.00038 * 151.74094 * 13 11 10 15 15 Si 1.86798 * 119.99824 * 331.74197 * 13 11 10 16 16 H 1.48497 * 109.47311 * 94.59259 * 15 13 11 17 17 H 1.48499 * 109.46918 * 214.58981 * 15 13 11 18 18 H 1.48506 * 109.47021 * 334.59026 * 15 13 11 19 19 C 1.40505 * 119.80338 * 179.97438 * 3 2 1 20 20 C 1.41575 * 120.59503 * 0.02562 * 19 3 2 21 21 O 1.21436 * 120.00515 * 356.12960 * 20 19 3 22 22 H 1.08995 * 109.47346 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.46877 * 300.00055 * 1 2 3 24 24 H 1.09008 * 109.46859 * 59.99919 * 1 2 3 25 25 H 1.08002 * 119.06734 * 0.02562 * 4 3 2 26 26 H 1.08004 * 122.50726 * 359.97438 * 6 5 4 27 27 H 1.07999 * 124.32204 * 180.02562 * 7 6 5 28 28 H 0.96997 * 119.99906 * 180.02562 * 14 13 11 29 29 H 1.08009 * 119.99615 * 176.12394 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2087 0.0000 4 6 1.2905 2.3619 -0.0005 5 6 1.8868 3.6437 0.0000 6 6 1.2379 4.9451 0.0000 7 6 2.0595 5.9776 0.0000 8 16 3.7344 5.4608 0.0007 9 6 3.2793 3.7610 0.0002 10 6 4.0908 2.5945 0.0005 11 6 5.4877 2.7023 0.0013 12 1 6.0775 2.0730 0.6513 13 6 6.1210 3.6287 -0.8432 14 7 7.2739 4.1392 -0.5043 15 14 5.3138 4.1305 -2.4513 16 1 4.5315 5.3757 -2.2452 17 1 6.3606 4.3678 -3.4776 18 1 4.4078 3.0468 -2.9097 19 6 3.4483 1.2774 0.0005 20 6 4.2276 0.0954 0.0006 21 8 3.6859 -0.9891 0.0711 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 0.2133 2.2842 -0.0005 26 1 0.1638 5.0581 -0.0007 27 1 1.7406 7.0095 0.0005 28 1 7.7111 4.7793 -1.0873 29 1 5.3040 0.1583 -0.0623 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396329557.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:50 Heat of formation + Delta-G solvation = -48.239721 kcal Electronic energy + Delta-G solvation = -17250.120969 eV Core-core repulsion = 14422.461008 eV Total energy + Delta-G solvation = -2827.659961 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.01245 -38.98590 -38.72492 -36.44725 -34.72472 -31.99570 -30.57960 -28.14970 -27.45964 -25.38566 -23.09655 -22.37087 -20.97644 -19.86883 -18.17717 -17.94189 -17.47274 -17.03564 -16.52465 -16.34469 -15.79811 -15.19834 -15.05166 -14.73477 -14.30283 -14.24358 -13.89555 -13.75051 -13.54243 -13.04920 -12.97962 -12.45171 -12.40572 -12.10704 -11.89374 -11.34995 -11.30415 -10.94282 -10.24364 -9.83070 -9.24157 -9.10150 -8.35782 -6.75851 -0.39003 0.66094 0.83328 1.04057 1.27703 1.33891 1.39474 1.47213 2.05820 2.08933 2.42964 2.57143 3.21551 3.86059 4.00211 4.30032 4.36731 4.42683 4.46080 4.63976 4.67547 4.75004 4.83712 5.07590 5.11005 5.27163 5.36948 5.50955 5.62952 5.78794 5.94545 6.30958 6.40058 6.74452 7.07815 7.80357 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.018885 B = 0.010944 C = 0.007729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.302447 B = 2557.753952 C = 3621.854778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.318 6.318 3 C 0.219 3.781 4 C -0.316 4.316 5 C 0.013 3.987 6 C -0.146 4.146 7 C -0.181 4.181 8 S 0.060 5.940 9 C -0.270 4.270 10 C 0.178 3.822 11 C -0.453 4.453 12 H 0.092 0.908 13 C 0.085 3.915 14 N -0.770 5.770 15 Si 0.872 3.128 16 H -0.183 1.183 17 H -0.251 1.251 18 H -0.272 1.272 19 C -0.368 4.368 20 C 0.386 3.614 21 O -0.540 6.540 22 H 0.114 0.886 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.140 0.860 26 H 0.170 0.830 27 H 0.201 0.799 28 H 0.309 0.691 29 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.978 6.324 -2.034 11.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.230 6.230 3 C 0.170 3.830 4 C -0.338 4.338 5 C 0.003 3.997 6 C -0.177 4.177 7 C -0.315 4.315 8 S 0.324 5.676 9 C -0.384 4.384 10 C 0.171 3.829 11 C -0.478 4.478 12 H 0.110 0.890 13 C -0.142 4.142 14 N -0.391 5.391 15 Si 0.691 3.309 16 H -0.106 1.106 17 H -0.175 1.175 18 H -0.196 1.196 19 C -0.374 4.374 20 C 0.257 3.743 21 O -0.426 6.426 22 H 0.132 0.868 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.158 0.842 26 H 0.188 0.812 27 H 0.218 0.782 28 H 0.121 0.879 29 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.502 6.599 -1.993 10.188 hybrid contribution -1.140 -0.672 -0.383 1.378 sum -8.641 5.927 -2.376 10.744 Atomic orbital electron populations 1.23318 0.77506 1.04881 1.02110 1.86260 1.22673 1.26962 1.87083 1.18954 0.91185 0.84298 0.88553 1.20348 0.99295 0.89417 1.24789 1.19443 0.91118 0.94304 0.94863 1.21168 1.01758 0.88972 1.05800 1.25603 0.95635 1.04250 1.05989 1.84146 1.07492 0.97937 1.78028 1.22926 0.96599 0.96655 1.22249 1.17966 0.92066 0.87926 0.84893 1.19486 0.91072 1.16972 1.20235 0.89024 1.26537 0.94736 0.91458 1.01472 1.69584 1.14839 1.17996 1.36640 0.86856 0.81259 0.84075 0.78700 1.10577 1.17489 1.19635 1.20031 0.91273 0.95135 1.30944 1.22020 0.94693 0.86644 0.70963 1.90416 1.77487 1.31835 1.42819 0.86798 0.91801 0.91835 0.84203 0.81248 0.78249 0.87932 0.89619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 9.79 113.37 1.11 1.58 15 2 O -0.32 -13.72 8.48 -68.29 -0.58 -14.30 15 3 C 0.22 10.05 6.67 22.72 0.15 10.20 15 4 C -0.32 -12.74 9.05 22.94 0.21 -12.53 15 5 C 0.01 0.51 6.02 -20.30 -0.12 0.39 15 6 C -0.15 -4.53 10.37 23.24 0.24 -4.29 15 7 C -0.18 -5.28 11.03 66.95 0.74 -4.54 15 8 S 0.06 2.29 18.18 -56.49 -1.03 1.27 15 9 C -0.27 -12.12 5.01 23.59 0.12 -12.00 15 10 C 0.18 8.78 4.77 -19.70 -0.09 8.69 15 11 C -0.45 -22.69 8.28 23.26 0.19 -22.50 15 12 H 0.09 4.82 7.63 -2.91 -0.02 4.79 15 13 C 0.08 3.95 4.55 85.42 0.39 4.34 15 14 N -0.77 -35.59 13.91 21.91 0.30 -35.29 15 15 Si 0.87 35.69 25.17 68.60 1.73 37.41 15 16 H -0.18 -6.78 5.44 99.33 0.54 -6.23 15 17 H -0.25 -9.42 7.11 99.48 0.71 -8.71 15 18 H -0.27 -12.44 7.11 99.48 0.71 -11.73 15 19 C -0.37 -18.42 5.92 -19.74 -0.12 -18.53 15 20 C 0.39 19.19 10.83 68.64 0.74 19.94 15 21 O -0.54 -28.69 15.86 17.93 0.28 -28.40 15 22 H 0.11 2.68 8.14 -2.39 -0.02 2.66 15 23 H 0.06 1.65 7.63 -2.39 -0.02 1.63 15 24 H 0.06 1.64 7.63 -2.38 -0.02 1.62 15 25 H 0.14 4.58 6.13 -2.91 -0.02 4.57 15 26 H 0.17 3.92 8.06 -2.91 -0.02 3.89 15 27 H 0.20 3.98 8.06 -2.91 -0.02 3.96 15 28 H 0.31 12.59 8.29 -92.71 -0.77 11.82 15 29 H 0.09 4.02 6.99 -2.91 -0.02 4.00 15 Total: -1.00 -61.60 262.12 5.29 -56.31 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: 1.02 Total: 12.27 kcal Atomic # 6 Polarization: -32.82 SS G_CDS: 3.56 Total: -29.27 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: 0.30 Total: -35.29 kcal Atomic # 8 Polarization: -42.41 SS G_CDS: -0.29 Total: -42.71 kcal Atomic # 14 Polarization: 35.69 SS G_CDS: 1.73 Total: 37.41 kcal Atomic # 16 Polarization: 2.29 SS G_CDS: -1.03 Total: 1.27 kcal Total: -61.60 5.29 -56.31 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396329557.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.071 kcal (2) G-P(sol) polarization free energy of solvation -61.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds