Wall clock time and date at job start Mon Mar 30 2020 06:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35811 * 116.99841 * 2 1 4 4 C 1.38371 * 119.50547 * 180.02562 * 3 2 1 5 5 C 1.39279 * 121.37412 * 180.02562 * 4 3 2 6 6 S 1.76049 * 130.20639 * 180.32309 * 5 4 3 7 7 C 1.75477 * 91.72613 * 180.02562 * 6 5 4 8 8 C 1.39610 * 124.88399 * 179.91549 * 7 6 5 9 9 H 1.07997 * 120.00071 * 193.29755 * 8 7 6 10 10 C 1.40401 * 119.99808 * 13.30015 * 8 7 6 11 11 N 1.30624 * 119.99537 * 200.32296 * 10 8 7 12 12 Si 1.86791 * 120.00103 * 20.31855 * 10 8 7 13 13 H 1.48500 * 109.47417 * 270.00287 * 12 10 8 14 14 H 1.48500 * 109.47196 * 30.00119 * 12 10 8 15 15 H 1.48499 * 109.47185 * 149.99785 * 12 10 8 16 16 C 1.37435 * 110.23084 * 359.65540 * 7 6 5 17 17 C 1.38830 * 115.09536 * 0.26198 * 16 7 6 18 18 C 1.47804 * 128.75699 * 180.02562 * 17 16 7 19 19 C 1.46458 * 120.31599 * 359.97438 * 18 17 16 20 20 O 1.21366 * 120.00004 * 179.97438 * 19 18 17 21 21 C 1.38824 * 119.51228 * 359.97438 * 3 2 1 22 22 H 1.08994 * 109.46632 * 299.99825 * 1 2 3 23 23 H 1.08996 * 109.47303 * 59.99774 * 1 2 3 24 24 H 1.09003 * 109.46970 * 179.97438 * 1 2 3 25 25 H 1.08000 * 119.31487 * 359.97239 * 4 3 2 26 26 H 0.96999 * 120.00888 * 354.70181 * 11 10 8 27 27 H 1.08003 * 122.44936 * 180.28457 * 16 7 6 28 28 H 1.07991 * 119.99851 * 0.02562 * 19 18 17 29 29 H 1.08006 * 119.90700 * 0.02562 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2101 0.0000 4 6 3.4279 1.2706 -0.0005 5 6 4.1003 2.4904 0.0000 6 16 5.8264 2.8365 -0.0081 7 6 5.5334 4.5666 0.0001 8 6 6.5292 5.5451 0.0001 9 1 6.2774 6.5719 0.2204 10 6 7.8582 5.1942 -0.2864 11 7 8.8352 5.9766 0.0872 12 14 8.2290 3.6086 -1.2015 13 1 8.4092 2.5041 -0.2253 14 1 7.1000 3.2862 -2.1107 15 1 9.4724 3.7749 -1.9961 16 6 4.1826 4.8199 0.0006 17 6 3.3722 3.6927 0.0006 18 6 1.8962 3.6142 0.0006 19 6 1.0909 4.8375 0.0012 20 8 -0.1207 4.7663 0.0007 21 6 1.2795 2.3679 -0.0005 22 1 -0.3632 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 3.9974 0.3530 -0.0005 26 1 8.6406 6.8356 0.4935 27 1 3.7810 5.8225 0.0008 28 1 1.5751 5.8027 0.0013 29 1 0.2016 2.3004 -0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396329619.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:32 Heat of formation + Delta-G solvation = -53.387296 kcal Electronic energy + Delta-G solvation = -16508.736344 eV Core-core repulsion = 13680.853167 eV Total energy + Delta-G solvation = -2827.883177 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.49204 -38.16915 -36.98899 -35.02987 -33.06124 -30.61249 -29.36266 -27.17051 -25.58714 -23.58529 -22.07354 -20.49831 -19.31256 -19.10961 -17.69696 -15.91832 -15.79346 -15.29032 -15.21207 -15.01330 -14.50872 -13.88863 -13.60737 -13.58223 -13.32437 -12.68436 -12.55389 -12.32648 -11.80977 -11.52058 -11.21810 -11.15035 -10.81492 -10.69256 -10.42233 -9.91357 -9.58220 -9.30173 -9.04863 -8.75251 -8.11710 -7.54085 -6.85744 -4.95532 1.08112 1.85333 2.21716 2.74922 2.87872 3.02610 3.08104 3.29066 3.33574 3.58039 3.88010 4.29930 4.68259 4.95326 5.33442 5.40201 5.43570 5.58221 5.65190 5.84883 6.05270 6.20699 6.46881 6.57409 6.73058 6.86406 6.95196 7.01666 7.09823 7.38086 7.51409 7.73623 7.93632 7.98141 8.10455 9.22230 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.027807 B = 0.006630 C = 0.005467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.710033 B = 4221.903852 C = 5120.277181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.326 6.326 3 C 0.015 3.985 4 C -0.035 4.035 5 C -0.205 4.205 6 S -0.016 6.016 7 C 0.063 3.937 8 C -0.408 4.408 9 H 0.104 0.896 10 C 0.043 3.957 11 N -0.753 5.753 12 Si 0.972 3.028 13 H -0.231 1.231 14 H -0.219 1.219 15 H -0.240 1.240 16 C -0.363 4.363 17 C 0.060 3.940 18 C -0.228 4.228 19 C 0.391 3.609 20 O -0.502 6.502 21 C -0.092 4.092 22 H 0.048 0.952 23 H 0.048 0.952 24 H 0.090 0.910 25 H 0.117 0.883 26 H 0.299 0.701 27 H 0.118 0.882 28 H 0.092 0.908 29 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.824 -5.147 -1.114 6.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.242 6.242 3 C -0.030 4.030 4 C -0.058 4.058 5 C -0.318 4.318 6 S 0.241 5.759 7 C -0.056 4.056 8 C -0.441 4.441 9 H 0.122 0.878 10 C -0.186 4.186 11 N -0.372 5.372 12 Si 0.792 3.208 13 H -0.156 1.156 14 H -0.142 1.142 15 H -0.165 1.165 16 C -0.386 4.386 17 C 0.053 3.947 18 C -0.232 4.232 19 C 0.256 3.744 20 O -0.382 6.382 21 C -0.113 4.113 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.109 0.891 25 H 0.135 0.865 26 H 0.112 0.888 27 H 0.136 0.864 28 H 0.108 0.892 29 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.820 -7.010 -1.621 7.422 hybrid contribution -2.468 2.154 0.743 3.359 sum -4.288 -4.856 -0.878 6.537 Atomic orbital electron populations 1.22859 0.79738 1.02714 1.00909 1.85923 1.20107 1.27192 1.90971 1.18029 0.91341 0.83638 1.10011 1.19416 0.90797 0.95931 0.99666 1.22063 0.96546 0.95662 1.17491 1.84071 1.03705 1.04522 1.83650 1.21335 0.96191 0.92785 0.95245 1.20566 0.92806 0.97023 1.33671 0.87795 1.27682 0.91495 1.05499 0.93897 1.70451 1.35872 1.09461 1.21369 0.84308 0.81724 0.73706 0.81107 1.15620 1.14240 1.16458 1.19423 0.90772 0.96993 1.31429 1.18886 0.91070 0.92026 0.92727 1.20995 0.91730 0.94298 1.16150 1.23509 0.88055 0.93250 0.69586 1.90438 1.17633 1.90992 1.39106 1.21084 0.99092 0.91467 0.99649 0.93344 0.93338 0.89120 0.86453 0.88786 0.86420 0.89202 0.85720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.80 101.05 0.99 1.42 15 2 O -0.33 -5.64 10.47 -19.15 -0.20 -5.84 15 3 C 0.01 0.28 6.66 -39.32 -0.26 0.02 15 4 C -0.03 -0.69 9.92 -39.15 -0.39 -1.08 15 5 C -0.21 -4.47 6.47 -38.32 -0.25 -4.72 15 6 S -0.02 -0.34 16.94 -107.50 -1.82 -2.16 15 7 C 0.06 1.43 5.72 -39.36 -0.23 1.21 15 8 C -0.41 -9.29 9.61 -38.26 -0.37 -9.66 15 9 H 0.10 2.36 8.06 -52.49 -0.42 1.94 15 10 C 0.04 0.94 5.50 -17.25 -0.09 0.85 15 11 N -0.75 -16.75 13.64 55.57 0.76 -15.99 15 12 Si 0.97 18.65 24.75 -169.99 -4.21 14.44 15 13 H -0.23 -4.27 6.84 56.52 0.39 -3.88 15 14 H -0.22 -4.18 6.54 56.52 0.37 -3.81 15 15 H -0.24 -4.34 7.11 56.52 0.40 -3.94 15 16 C -0.36 -8.14 9.76 -39.65 -0.39 -8.52 15 17 C 0.06 1.33 6.01 -104.89 -0.63 0.70 15 18 C -0.23 -4.69 6.07 -102.37 -0.62 -5.31 15 19 C 0.39 7.41 11.28 34.04 0.38 7.80 15 20 O -0.50 -10.37 17.15 5.48 0.09 -10.28 15 21 C -0.09 -1.80 8.54 -39.06 -0.33 -2.13 15 22 H 0.05 0.60 7.63 -51.93 -0.40 0.21 15 23 H 0.05 0.60 7.63 -51.93 -0.40 0.21 15 24 H 0.09 0.89 8.14 -51.93 -0.42 0.47 15 25 H 0.12 2.12 8.06 -52.49 -0.42 1.70 15 26 H 0.30 6.33 8.73 -40.82 -0.36 5.97 15 27 H 0.12 2.47 7.42 -52.48 -0.39 2.08 15 28 H 0.09 1.50 7.32 -52.49 -0.38 1.11 15 29 H 0.13 2.24 5.78 -52.48 -0.30 1.94 15 LS Contribution 267.55 15.07 4.03 4.03 Total: -1.00 -25.36 267.55 -5.87 -31.22 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -2.34 Total: 3.99 kcal Atomic # 6 Polarization: -17.24 SS G_CDS: -2.18 Total: -19.43 kcal Atomic # 7 Polarization: -16.75 SS G_CDS: 0.76 Total: -15.99 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.11 Total: -16.11 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -4.21 Total: 14.44 kcal Atomic # 16 Polarization: -0.34 SS G_CDS: -1.82 Total: -2.16 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -25.36 -5.87 -31.22 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396329619.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.163 kcal (2) G-P(sol) polarization free energy of solvation -25.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds