Wall clock time and date at job start Mon Mar 30 2020 06:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35811 * 116.99841 * 2 1 4 4 C 1.38371 * 119.50547 * 180.02562 * 3 2 1 5 5 C 1.39279 * 121.37412 * 180.02562 * 4 3 2 6 6 S 1.76049 * 130.20639 * 180.32309 * 5 4 3 7 7 C 1.75477 * 91.72613 * 180.02562 * 6 5 4 8 8 C 1.39610 * 124.88399 * 179.91549 * 7 6 5 9 9 H 1.07997 * 120.00071 * 193.29755 * 8 7 6 10 10 C 1.40401 * 119.99808 * 13.30015 * 8 7 6 11 11 N 1.30624 * 119.99537 * 200.32296 * 10 8 7 12 12 Si 1.86791 * 120.00103 * 20.31855 * 10 8 7 13 13 H 1.48500 * 109.47417 * 270.00287 * 12 10 8 14 14 H 1.48500 * 109.47196 * 30.00119 * 12 10 8 15 15 H 1.48499 * 109.47185 * 149.99785 * 12 10 8 16 16 C 1.37435 * 110.23084 * 359.65540 * 7 6 5 17 17 C 1.38830 * 115.09536 * 0.26198 * 16 7 6 18 18 C 1.47804 * 128.75699 * 180.02562 * 17 16 7 19 19 C 1.46458 * 120.31599 * 359.97438 * 18 17 16 20 20 O 1.21366 * 120.00004 * 179.97438 * 19 18 17 21 21 C 1.38824 * 119.51228 * 359.97438 * 3 2 1 22 22 H 1.08994 * 109.46632 * 299.99825 * 1 2 3 23 23 H 1.08996 * 109.47303 * 59.99774 * 1 2 3 24 24 H 1.09003 * 109.46970 * 179.97438 * 1 2 3 25 25 H 1.08000 * 119.31487 * 359.97239 * 4 3 2 26 26 H 0.96999 * 120.00888 * 354.70181 * 11 10 8 27 27 H 1.08003 * 122.44936 * 180.28457 * 16 7 6 28 28 H 1.07991 * 119.99851 * 0.02562 * 19 18 17 29 29 H 1.08006 * 119.90700 * 0.02562 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2101 0.0000 4 6 3.4279 1.2706 -0.0005 5 6 4.1003 2.4904 0.0000 6 16 5.8264 2.8365 -0.0081 7 6 5.5334 4.5666 0.0001 8 6 6.5292 5.5451 0.0001 9 1 6.2774 6.5719 0.2204 10 6 7.8582 5.1942 -0.2864 11 7 8.8352 5.9766 0.0872 12 14 8.2290 3.6086 -1.2015 13 1 8.4092 2.5041 -0.2253 14 1 7.1000 3.2862 -2.1107 15 1 9.4724 3.7749 -1.9961 16 6 4.1826 4.8199 0.0006 17 6 3.3722 3.6927 0.0006 18 6 1.8962 3.6142 0.0006 19 6 1.0909 4.8375 0.0012 20 8 -0.1207 4.7663 0.0007 21 6 1.2795 2.3679 -0.0005 22 1 -0.3632 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 3.9974 0.3530 -0.0005 26 1 8.6406 6.8356 0.4935 27 1 3.7810 5.8225 0.0008 28 1 1.5751 5.8027 0.0013 29 1 0.2016 2.3004 -0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396329619.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:32 Heat of formation + Delta-G solvation = -67.148593 kcal Electronic energy + Delta-G solvation = -16509.333078 eV Core-core repulsion = 13680.853167 eV Total energy + Delta-G solvation = -2828.479911 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.00067 -39.68173 -38.56431 -36.65604 -34.66898 -32.18261 -30.97048 -28.37011 -27.18483 -25.12108 -23.69629 -22.05763 -20.93665 -20.76050 -19.15897 -17.45577 -17.40806 -16.77673 -16.55233 -16.46662 -16.04282 -15.45402 -15.18264 -15.17695 -14.87193 -14.21861 -14.11702 -13.84718 -13.29368 -12.89805 -12.80303 -12.57732 -12.36140 -12.12059 -11.98975 -11.51349 -11.17949 -10.87250 -10.62029 -10.37757 -9.79701 -9.16374 -8.49487 -6.65987 -0.51506 0.21727 0.62073 1.10937 1.26039 1.43537 1.52870 1.72451 1.80927 2.05616 2.56924 2.64763 3.02605 3.46436 3.90722 4.02038 4.24493 4.35895 4.40934 4.56613 4.64771 4.71632 4.90815 4.97404 5.05634 5.22928 5.33933 5.34858 5.49343 5.72198 5.83123 6.06559 6.27557 6.49042 6.59885 7.55768 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.027807 B = 0.006630 C = 0.005467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.710033 B = 4221.903852 C = 5120.277181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.334 6.334 3 C 0.030 3.970 4 C -0.045 4.045 5 C -0.221 4.221 6 S -0.002 6.002 7 C 0.046 3.954 8 C -0.436 4.436 9 H 0.091 0.909 10 C 0.024 3.976 11 N -0.771 5.771 12 Si 0.986 3.014 13 H -0.219 1.219 14 H -0.220 1.220 15 H -0.221 1.221 16 C -0.375 4.375 17 C 0.040 3.960 18 C -0.230 4.230 19 C 0.398 3.602 20 O -0.515 6.515 21 C -0.098 4.098 22 H 0.053 0.947 23 H 0.054 0.946 24 H 0.125 0.875 25 H 0.135 0.865 26 H 0.298 0.702 27 H 0.124 0.876 28 H 0.119 0.881 29 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.228 -6.843 -1.388 8.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.249 6.249 3 C -0.016 4.016 4 C -0.069 4.069 5 C -0.334 4.334 6 S 0.254 5.746 7 C -0.072 4.072 8 C -0.469 4.469 9 H 0.109 0.891 10 C -0.201 4.201 11 N -0.390 5.390 12 Si 0.802 3.198 13 H -0.144 1.144 14 H -0.144 1.144 15 H -0.144 1.144 16 C -0.398 4.398 17 C 0.033 3.967 18 C -0.234 4.234 19 C 0.264 3.736 20 O -0.395 6.395 21 C -0.118 4.118 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.143 0.857 25 H 0.153 0.847 26 H 0.110 0.890 27 H 0.142 0.858 28 H 0.135 0.865 29 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -3.229 -8.700 -1.887 9.469 hybrid contribution -2.357 2.534 0.852 3.564 sum -5.586 -6.166 -1.034 8.384 Atomic orbital electron populations 1.23229 0.77223 1.05315 1.01414 1.85935 1.22614 1.25905 1.90456 1.18156 0.91317 0.84478 1.07648 1.19650 0.91489 0.96058 0.99689 1.22312 0.96775 0.96338 1.17972 1.83881 1.03867 1.03443 1.83395 1.21488 0.96465 0.93669 0.95563 1.20520 0.93582 0.96650 1.36159 0.89129 1.28406 0.91142 1.06903 0.93662 1.70483 1.35988 1.09879 1.22683 0.84189 0.82463 0.72149 0.81045 1.14435 1.14356 1.14370 1.19601 0.90892 0.97609 1.31723 1.19042 0.91886 0.92059 0.93730 1.21296 0.91342 0.95528 1.15194 1.23789 0.87614 0.93763 0.68443 1.90437 1.18274 1.91193 1.39615 1.21344 1.00074 0.91193 0.99189 0.92797 0.92757 0.85667 0.84696 0.88976 0.85835 0.86454 0.84050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 9.80 113.37 1.11 1.61 15 2 O -0.33 -10.42 10.47 -91.43 -0.96 -11.37 15 3 C 0.03 1.07 6.66 22.44 0.15 1.22 15 4 C -0.05 -1.73 9.92 22.55 0.22 -1.51 15 5 C -0.22 -9.40 6.47 23.09 0.15 -9.25 15 6 S 0.00 -0.11 16.94 -56.49 -0.96 -1.06 15 7 C 0.05 2.13 5.72 22.41 0.13 2.26 15 8 C -0.44 -20.42 9.61 23.13 0.22 -20.20 15 9 H 0.09 4.32 8.06 -2.91 -0.02 4.30 15 10 C 0.02 1.07 5.50 85.40 0.47 1.54 15 11 N -0.77 -34.88 13.64 21.91 0.30 -34.58 15 12 Si 0.99 36.87 24.75 68.60 1.70 38.57 15 13 H -0.22 -7.77 6.84 99.48 0.68 -7.09 15 14 H -0.22 -8.21 6.54 99.48 0.65 -7.56 15 15 H -0.22 -7.52 7.11 99.48 0.71 -6.82 15 16 C -0.37 -16.78 9.76 22.22 0.22 -16.57 15 17 C 0.04 1.74 6.01 -20.04 -0.12 1.62 15 18 C -0.23 -9.04 6.07 -18.41 -0.11 -9.15 15 19 C 0.40 14.26 11.28 69.96 0.79 15.05 15 20 O -0.52 -20.06 17.15 -3.30 -0.06 -20.12 15 21 C -0.10 -3.55 8.54 22.61 0.19 -3.36 15 22 H 0.05 1.15 7.63 -2.39 -0.02 1.13 15 23 H 0.05 1.15 7.63 -2.39 -0.02 1.14 15 24 H 0.13 1.92 8.14 -2.39 -0.02 1.90 15 25 H 0.14 4.57 8.06 -2.91 -0.02 4.55 15 26 H 0.30 13.00 8.73 -92.71 -0.81 12.19 15 27 H 0.12 5.19 7.42 -2.91 -0.02 5.16 15 28 H 0.12 3.63 7.32 -2.92 -0.02 3.61 15 29 H 0.14 4.63 5.78 -2.91 -0.02 4.62 15 Total: -1.00 -52.67 267.55 4.51 -48.15 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: 1.07 Total: 17.13 kcal Atomic # 6 Polarization: -40.14 SS G_CDS: 3.42 Total: -36.71 kcal Atomic # 7 Polarization: -34.88 SS G_CDS: 0.30 Total: -34.58 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -1.01 Total: -31.49 kcal Atomic # 14 Polarization: 36.87 SS G_CDS: 1.70 Total: 38.57 kcal Atomic # 16 Polarization: -0.11 SS G_CDS: -0.96 Total: -1.06 kcal Total: -52.67 4.51 -48.15 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396329619.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.996 kcal (2) G-P(sol) polarization free energy of solvation -52.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds