Wall clock time and date at job start Mon Mar 30 2020 06:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36212 * 117.00322 * 2 1 4 4 C 1.32363 * 122.59020 * 359.97438 * 3 2 1 5 5 S 1.75244 * 111.39687 * 180.02562 * 4 3 2 6 6 C 1.76125 * 92.27075 * 359.97438 * 5 4 3 7 7 C 1.40377 * 129.86975 * 180.02562 * 6 5 4 8 8 C 1.35656 * 122.03580 * 179.97438 * 7 6 5 9 9 C 1.41076 * 120.33194 * 359.97438 * 8 7 6 10 10 C 1.40473 * 120.49417 * 179.72172 * 9 8 7 11 11 H 1.08004 * 119.99322 * 144.88315 * 10 9 8 12 12 C 1.40420 * 120.00462 * 324.88774 * 10 9 8 13 13 N 1.30555 * 119.99868 * 341.93360 * 12 10 9 14 14 Si 1.86800 * 120.00212 * 161.93369 * 12 10 9 15 15 H 1.48501 * 109.47258 * 0.02562 * 14 12 10 16 16 H 1.48509 * 109.47027 * 119.99999 * 14 12 10 17 17 H 1.48501 * 109.47265 * 239.99648 * 14 12 10 18 18 C 1.46198 * 119.00532 * 0.02562 * 9 8 7 19 19 C 1.41637 * 120.48112 * 179.97438 * 18 9 8 20 20 O 1.21438 * 120.00440 * 354.54512 * 19 18 9 21 21 C 1.40127 * 109.50956 * 0.02562 * 6 5 4 22 22 H 1.08997 * 109.47688 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47318 * 299.99900 * 1 2 3 24 24 H 1.09004 * 109.47389 * 59.99543 * 1 2 3 25 25 H 1.08001 * 124.29921 * 359.97438 * 4 3 2 26 26 H 1.08005 * 118.98394 * 359.97438 * 7 6 5 27 27 H 1.08002 * 119.83205 * 180.02562 * 8 7 6 28 28 H 0.97000 * 120.00004 * 180.02562 * 13 12 10 29 29 H 1.08006 * 119.99855 * 174.54229 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0474 1.2136 0.0000 4 6 1.3775 2.3552 -0.0005 5 16 2.4611 3.7324 -0.0011 6 6 3.8874 2.6990 0.0002 7 6 5.2482 3.0435 0.0009 8 6 6.2280 2.1053 0.0024 9 6 5.9004 0.7331 0.0037 10 6 6.9122 -0.2414 -0.0006 11 1 6.7726 -1.1670 0.5380 12 6 8.1050 -0.0120 -0.7052 13 7 8.1515 0.9119 -1.6265 14 14 9.6251 -1.0286 -0.3243 15 1 9.3123 -2.0025 0.7523 16 1 10.0500 -1.7602 -1.5448 17 1 10.7214 -0.1317 0.1220 18 6 4.4921 0.3405 0.0030 19 6 4.1278 -1.0283 0.0038 20 8 4.9834 -1.8844 -0.0949 21 6 3.4913 1.3549 0.0004 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 0.3000 2.4285 -0.0013 26 1 5.5237 4.0878 0.0003 27 1 7.2640 2.4103 0.0033 28 1 8.9754 1.0701 -2.1135 29 1 3.0891 -1.3105 0.0922 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396330110.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:00 Heat of formation + Delta-G solvation = -33.482544 kcal Electronic energy + Delta-G solvation = -16972.847915 eV Core-core repulsion = 14145.827873 eV Total energy + Delta-G solvation = -2827.020042 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.34760 -37.89495 -36.44494 -34.48308 -32.61792 -30.12680 -28.82274 -27.28527 -25.89231 -23.07658 -22.12265 -20.09865 -19.72630 -17.72499 -16.54875 -16.43384 -15.58693 -15.39783 -15.31447 -14.54056 -13.86145 -13.79436 -13.08856 -12.87649 -12.83440 -12.45797 -12.16018 -11.80313 -11.68188 -11.32663 -11.17928 -10.96303 -10.80354 -10.38668 -10.26942 -9.95170 -9.76023 -9.38255 -8.21040 -8.01544 -7.54548 -7.24377 -6.65690 -4.65579 1.44871 2.23809 2.37528 2.83810 2.91256 2.95072 3.04153 3.17884 3.70086 3.74189 3.89893 4.39836 5.20467 5.26470 5.31942 5.36246 5.61739 5.88786 5.94411 6.03082 6.22863 6.54376 6.62455 6.79153 6.97487 7.05089 7.24091 7.39967 7.67097 7.74723 7.83352 8.27431 8.44669 8.57184 9.17689 9.73952 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.026611 B = 0.007115 C = 0.005750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.924951 B = 3934.236631 C = 4868.114667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.302 6.302 3 C 0.121 3.879 4 C -0.314 4.314 5 S 0.037 5.963 6 C -0.216 4.216 7 C -0.064 4.064 8 C -0.111 4.111 9 C 0.143 3.857 10 C -0.379 4.379 11 H 0.114 0.886 12 C 0.068 3.932 13 N -0.759 5.759 14 Si 0.920 3.080 15 H -0.252 1.252 16 H -0.269 1.269 17 H -0.268 1.268 18 C -0.299 4.299 19 C 0.366 3.634 20 O -0.505 6.505 21 C 0.013 3.987 22 H 0.095 0.905 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.154 0.846 26 H 0.101 0.899 27 H 0.119 0.881 28 H 0.291 0.709 29 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.817 2.791 1.991 7.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.216 6.216 3 C 0.064 3.936 4 C -0.448 4.448 5 S 0.295 5.705 6 C -0.330 4.330 7 C -0.087 4.087 8 C -0.131 4.131 9 C 0.138 3.862 10 C -0.405 4.405 11 H 0.132 0.868 12 C -0.155 4.155 13 N -0.381 5.381 14 Si 0.743 3.257 15 H -0.175 1.175 16 H -0.194 1.194 17 H -0.193 1.193 18 C -0.305 4.305 19 C 0.236 3.764 20 O -0.388 6.388 21 C 0.005 3.995 22 H 0.114 0.886 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.172 0.828 26 H 0.119 0.881 27 H 0.137 0.863 28 H 0.103 0.897 29 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.455 3.808 1.751 7.697 hybrid contribution 0.281 -1.355 -0.092 1.387 sum -6.174 2.454 1.659 6.848 Atomic orbital electron populations 1.22974 0.79565 1.03329 1.00867 1.86155 1.20193 1.26190 1.89110 1.18823 0.91155 0.84030 0.99627 1.24392 1.02745 0.95930 1.21733 1.83247 0.95812 1.08336 1.83067 1.21652 0.96377 0.93914 1.21077 1.19739 0.89647 0.98294 1.00971 1.20984 0.97855 0.92873 1.01419 1.18535 0.90227 0.91957 0.85471 1.20346 0.95684 1.03415 1.21039 0.86829 1.26358 1.00782 0.95040 0.93354 1.69698 1.29261 1.25723 1.13465 0.86031 0.79111 0.80308 0.80256 1.17520 1.19372 1.19300 1.20164 0.91667 0.93612 1.25053 1.21911 0.92827 0.88069 0.73588 1.90413 1.54446 1.53436 1.40527 1.18358 0.87932 0.93165 1.00018 0.88640 0.93164 0.93161 0.82814 0.88116 0.86349 0.89738 0.91664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.92 101.05 1.00 1.35 15 2 O -0.30 -5.45 8.15 -20.42 -0.17 -5.61 15 3 C 0.12 2.42 6.78 -38.80 -0.26 2.16 15 4 C -0.31 -5.51 9.94 28.81 0.29 -5.23 15 5 S 0.04 0.68 23.23 -107.50 -2.50 -1.82 15 6 C -0.22 -4.77 6.49 -38.07 -0.25 -5.01 15 7 C -0.06 -1.42 9.91 -39.70 -0.39 -1.81 15 8 C -0.11 -2.64 8.58 -39.43 -0.34 -2.98 15 9 C 0.14 3.73 5.58 -104.78 -0.58 3.14 15 10 C -0.38 -9.86 7.63 -37.92 -0.29 -10.15 15 11 H 0.11 3.07 6.11 -52.48 -0.32 2.75 15 12 C 0.07 1.61 5.07 -17.27 -0.09 1.53 15 13 N -0.76 -18.19 11.74 55.57 0.65 -17.53 15 14 Si 0.92 17.87 29.60 -169.99 -5.03 12.84 15 15 H -0.25 -4.98 7.11 56.52 0.40 -4.58 15 16 H -0.27 -5.18 7.11 56.52 0.40 -4.77 15 17 H -0.27 -4.94 7.11 56.52 0.40 -4.54 15 18 C -0.30 -7.58 5.98 -103.77 -0.62 -8.20 15 19 C 0.37 9.06 10.94 32.03 0.35 9.41 15 20 O -0.51 -13.67 14.44 5.42 0.08 -13.59 15 21 C 0.01 0.30 6.01 -104.84 -0.63 -0.33 15 22 H 0.10 0.94 8.14 -51.93 -0.42 0.51 15 23 H 0.05 0.55 7.84 -51.93 -0.41 0.14 15 24 H 0.05 0.56 7.83 -51.93 -0.41 0.15 15 25 H 0.15 2.19 6.90 -52.49 -0.36 1.82 15 26 H 0.10 1.93 8.06 -52.48 -0.42 1.50 15 27 H 0.12 2.75 7.00 -52.49 -0.37 2.38 15 28 H 0.29 6.19 8.29 -40.82 -0.34 5.85 15 29 H 0.07 1.48 5.77 -52.48 -0.30 1.18 15 LS Contribution 267.23 15.07 4.03 4.03 Total: -1.00 -28.51 267.23 -6.90 -35.40 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -2.15 Total: 2.41 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -1.81 Total: -16.12 kcal Atomic # 7 Polarization: -18.19 SS G_CDS: 0.65 Total: -17.53 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.09 Total: -19.20 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -5.03 Total: 12.84 kcal Atomic # 16 Polarization: 0.68 SS G_CDS: -2.50 Total: -1.82 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -28.51 -6.90 -35.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396330110.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.920 kcal (2) G-P(sol) polarization free energy of solvation -28.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds