Wall clock time and date at job start Mon Mar 30 2020 06:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36212 * 117.00322 * 2 1 4 4 C 1.32363 * 122.59020 * 359.97438 * 3 2 1 5 5 S 1.75244 * 111.39687 * 180.02562 * 4 3 2 6 6 C 1.76125 * 92.27075 * 359.97438 * 5 4 3 7 7 C 1.40377 * 129.86975 * 180.02562 * 6 5 4 8 8 C 1.35656 * 122.03580 * 179.97438 * 7 6 5 9 9 C 1.41076 * 120.33194 * 359.97438 * 8 7 6 10 10 C 1.40473 * 120.49417 * 179.72172 * 9 8 7 11 11 H 1.08004 * 119.99322 * 144.88315 * 10 9 8 12 12 C 1.40420 * 120.00462 * 324.88774 * 10 9 8 13 13 N 1.30555 * 119.99868 * 341.93360 * 12 10 9 14 14 Si 1.86800 * 120.00212 * 161.93369 * 12 10 9 15 15 H 1.48501 * 109.47258 * 0.02562 * 14 12 10 16 16 H 1.48509 * 109.47027 * 119.99999 * 14 12 10 17 17 H 1.48501 * 109.47265 * 239.99648 * 14 12 10 18 18 C 1.46198 * 119.00532 * 0.02562 * 9 8 7 19 19 C 1.41637 * 120.48112 * 179.97438 * 18 9 8 20 20 O 1.21438 * 120.00440 * 354.54512 * 19 18 9 21 21 C 1.40127 * 109.50956 * 0.02562 * 6 5 4 22 22 H 1.08997 * 109.47688 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47318 * 299.99900 * 1 2 3 24 24 H 1.09004 * 109.47389 * 59.99543 * 1 2 3 25 25 H 1.08001 * 124.29921 * 359.97438 * 4 3 2 26 26 H 1.08005 * 118.98394 * 359.97438 * 7 6 5 27 27 H 1.08002 * 119.83205 * 180.02562 * 8 7 6 28 28 H 0.97000 * 120.00004 * 180.02562 * 13 12 10 29 29 H 1.08006 * 119.99855 * 174.54229 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0474 1.2136 0.0000 4 6 1.3775 2.3552 -0.0005 5 16 2.4611 3.7324 -0.0011 6 6 3.8874 2.6990 0.0002 7 6 5.2482 3.0435 0.0009 8 6 6.2280 2.1053 0.0024 9 6 5.9004 0.7331 0.0037 10 6 6.9122 -0.2414 -0.0006 11 1 6.7726 -1.1670 0.5380 12 6 8.1050 -0.0120 -0.7052 13 7 8.1515 0.9119 -1.6265 14 14 9.6251 -1.0286 -0.3243 15 1 9.3123 -2.0025 0.7523 16 1 10.0500 -1.7602 -1.5448 17 1 10.7214 -0.1317 0.1220 18 6 4.4921 0.3405 0.0030 19 6 4.1278 -1.0283 0.0038 20 8 4.9834 -1.8844 -0.0949 21 6 3.4913 1.3549 0.0004 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 0.3000 2.4285 -0.0013 26 1 5.5237 4.0878 0.0003 27 1 7.2640 2.4103 0.0033 28 1 8.9754 1.0701 -2.1135 29 1 3.0891 -1.3105 0.0922 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396330110.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:59 Heat of formation + Delta-G solvation = -49.907756 kcal Electronic energy + Delta-G solvation = -16973.560165 eV Core-core repulsion = 14145.827873 eV Total energy + Delta-G solvation = -2827.732292 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.85186 -39.57770 -38.26568 -36.21378 -34.25142 -31.94434 -30.50468 -28.35331 -27.67676 -24.90093 -23.74071 -21.74029 -21.40785 -19.46469 -18.23227 -17.84289 -17.31524 -16.93402 -16.60050 -16.31091 -15.46352 -15.35607 -14.92913 -14.65877 -14.44122 -14.00298 -13.78481 -13.38812 -13.23286 -12.87569 -12.66434 -12.37443 -12.28602 -12.13503 -11.85371 -11.59624 -11.38214 -11.02975 -10.01143 -9.82971 -9.28436 -9.00927 -8.22936 -6.54359 -0.25974 0.48148 0.88337 1.25899 1.33586 1.35786 1.50656 1.56721 2.05682 2.13940 2.45333 2.56672 3.45344 3.83309 4.10972 4.24459 4.33117 4.46591 4.56158 4.60943 4.76990 4.89111 4.96843 5.01776 5.17785 5.29757 5.46873 5.60240 5.86641 5.95544 6.39565 6.45153 6.55123 6.71210 7.27680 7.99627 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.026611 B = 0.007115 C = 0.005750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.924951 B = 3934.236631 C = 4868.114667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.326 6.326 3 C 0.098 3.902 4 C -0.294 4.294 5 S 0.095 5.905 6 C -0.241 4.241 7 C -0.057 4.057 8 C -0.131 4.131 9 C 0.119 3.881 10 C -0.412 4.412 11 H 0.091 0.909 12 C 0.036 3.964 13 N -0.782 5.782 14 Si 0.988 3.012 15 H -0.264 1.264 16 H -0.262 1.262 17 H -0.246 1.246 18 C -0.335 4.335 19 C 0.363 3.637 20 O -0.542 6.542 21 C -0.004 4.004 22 H 0.118 0.882 23 H 0.067 0.933 24 H 0.064 0.936 25 H 0.195 0.805 26 H 0.130 0.870 27 H 0.116 0.884 28 H 0.304 0.696 29 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.276 4.268 1.945 9.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.241 6.241 3 C 0.041 3.959 4 C -0.428 4.428 5 S 0.354 5.646 6 C -0.356 4.356 7 C -0.078 4.078 8 C -0.152 4.152 9 C 0.114 3.886 10 C -0.437 4.437 11 H 0.109 0.891 12 C -0.186 4.186 13 N -0.405 5.405 14 Si 0.807 3.193 15 H -0.187 1.187 16 H -0.186 1.186 17 H -0.169 1.169 18 C -0.341 4.341 19 C 0.236 3.764 20 O -0.428 6.428 21 C -0.012 4.012 22 H 0.136 0.864 23 H 0.085 0.915 24 H 0.083 0.917 25 H 0.212 0.788 26 H 0.148 0.852 27 H 0.134 0.866 28 H 0.116 0.884 29 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.949 5.324 1.702 9.718 hybrid contribution 0.495 -1.674 -0.088 1.748 sum -7.454 3.650 1.614 8.455 Atomic orbital electron populations 1.23360 0.76471 1.05505 1.02298 1.86090 1.23277 1.25484 1.89222 1.18641 0.89981 0.85607 1.01678 1.24886 1.04645 0.94785 1.18453 1.83027 0.92943 1.06813 1.81794 1.22132 0.98048 0.95127 1.20245 1.20066 0.89648 0.99353 0.98777 1.20964 0.98364 0.92529 1.03333 1.18930 0.90904 0.93114 0.85683 1.20362 0.97638 1.03067 1.22649 0.89078 1.27086 1.02773 0.96167 0.92536 1.69680 1.30666 1.26551 1.13647 0.85071 0.75753 0.78767 0.79746 1.18731 1.18635 1.16909 1.20415 0.92335 0.94533 1.26848 1.22248 0.93492 0.87927 0.72711 1.90383 1.55530 1.54152 1.42717 1.18719 0.89783 0.93244 0.99495 0.86385 0.91482 0.91720 0.78802 0.85176 0.86573 0.88407 0.89234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.92 113.37 1.12 1.50 15 2 O -0.33 -11.19 8.15 -95.97 -0.78 -11.97 15 3 C 0.10 3.74 6.78 22.93 0.16 3.89 15 4 C -0.29 -9.19 9.94 66.73 0.66 -8.53 15 5 S 0.10 3.14 23.23 -56.49 -1.31 1.83 15 6 C -0.24 -10.38 6.49 23.25 0.15 -10.23 15 7 C -0.06 -2.47 9.91 22.19 0.22 -2.25 15 8 C -0.13 -6.44 8.58 22.37 0.19 -6.25 15 9 C 0.12 6.46 5.58 -19.97 -0.11 6.35 15 10 C -0.41 -22.59 7.63 23.35 0.18 -22.41 15 11 H 0.09 5.29 6.11 -2.91 -0.02 5.27 15 12 C 0.04 1.73 5.07 85.41 0.43 2.16 15 13 N -0.78 -38.21 11.74 21.91 0.26 -37.95 15 14 Si 0.99 37.28 29.60 68.60 2.03 39.31 15 15 H -0.26 -10.31 7.11 99.48 0.71 -9.61 15 16 H -0.26 -9.52 7.11 99.48 0.71 -8.81 15 17 H -0.25 -8.32 7.11 99.48 0.71 -7.61 15 18 C -0.34 -17.67 5.98 -19.31 -0.12 -17.78 15 19 C 0.36 18.81 10.94 68.66 0.75 19.56 15 20 O -0.54 -31.00 14.44 -3.52 -0.05 -31.05 15 21 C 0.00 -0.18 6.01 -20.00 -0.12 -0.30 15 22 H 0.12 1.95 8.14 -2.39 -0.02 1.93 15 23 H 0.07 1.20 7.84 -2.39 -0.02 1.18 15 24 H 0.06 1.19 7.83 -2.38 -0.02 1.17 15 25 H 0.19 4.42 6.90 -2.91 -0.02 4.40 15 26 H 0.13 4.75 8.06 -2.91 -0.02 4.73 15 27 H 0.12 5.58 7.00 -2.91 -0.02 5.56 15 28 H 0.30 12.96 8.29 -92.71 -0.77 12.20 15 29 H 0.09 4.14 5.77 -2.91 -0.02 4.13 15 Total: -1.00 -64.46 267.23 4.86 -59.60 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: 1.20 Total: 14.52 kcal Atomic # 6 Polarization: -37.81 SS G_CDS: 3.52 Total: -34.28 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.26 Total: -37.95 kcal Atomic # 8 Polarization: -42.19 SS G_CDS: -0.83 Total: -43.02 kcal Atomic # 14 Polarization: 37.28 SS G_CDS: 2.03 Total: 39.31 kcal Atomic # 16 Polarization: 3.14 SS G_CDS: -1.31 Total: 1.83 kcal Total: -64.46 4.86 -59.60 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396330110.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.693 kcal (2) G-P(sol) polarization free energy of solvation -64.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds