Wall clock time and date at job start Mon Mar 30 2020 06:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35442 * 116.99665 * 2 1 4 4 C 1.39601 * 119.53070 * 90.00188 * 3 2 1 5 5 S 1.76099 * 130.37890 * 0.02562 * 4 3 2 6 6 C 1.75506 * 91.48327 * 179.97438 * 5 4 3 7 7 C 1.32801 * 110.65269 * 359.97438 * 6 5 4 8 8 C 1.39817 * 120.25766 * 179.97438 * 4 3 2 9 9 C 1.47913 * 118.56509 * 359.97438 * 8 4 3 10 10 C 1.46430 * 120.07052 * 179.72287 * 9 8 4 11 11 O 1.21366 * 119.99770 * 180.02562 * 10 9 8 12 12 C 1.38449 * 119.85318 * 0.02562 * 9 8 4 13 13 C 1.40483 * 120.06499 * 0.02562 * 12 9 8 14 14 C 1.41000 * 119.83638 * 179.97438 * 13 12 9 15 15 H 1.08001 * 119.99818 * 154.07296 * 14 13 12 16 16 C 1.39829 * 120.00295 * 334.06786 * 14 13 12 17 17 N 1.30946 * 119.99519 * 342.53335 * 16 14 13 18 18 Si 1.86799 * 120.00065 * 162.53122 * 16 14 13 19 19 H 1.48506 * 109.46766 * 60.00442 * 18 16 14 20 20 H 1.48498 * 109.46980 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47412 * 300.00436 * 18 16 14 22 22 H 1.08999 * 109.46864 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46999 * 299.99858 * 1 2 3 24 24 H 1.08998 * 109.47282 * 60.00102 * 1 2 3 25 25 H 1.08005 * 124.67324 * 180.02562 * 6 5 4 26 26 H 1.07994 * 122.06270 * 180.02562 * 7 6 5 27 27 H 1.07993 * 120.00344 * 0.02562 * 10 9 8 28 28 H 1.07996 * 119.96717 * 179.97438 * 12 9 8 29 29 H 0.97000 * 119.99746 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0439 1.2068 0.0000 4 6 2.3563 1.8199 1.2147 5 16 2.0823 1.2806 2.8685 6 6 2.8234 2.7348 3.5138 7 6 3.2287 3.5299 2.5304 8 6 2.9914 3.0654 1.2324 9 6 3.3209 3.7097 -0.0576 10 6 3.9806 5.0168 -0.0775 11 8 4.2499 5.5445 -1.1367 12 6 2.9985 3.0771 -1.2462 13 6 2.3594 1.8262 -1.2268 14 6 2.0328 1.1864 -2.4401 15 1 1.9425 0.1108 -2.4761 16 6 1.8257 1.9445 -3.5967 17 7 1.5948 3.2301 -3.5041 18 14 1.8787 1.1234 -5.2736 19 1 0.8332 0.0709 -5.3426 20 1 1.6298 2.1375 -6.3294 21 1 3.2143 0.5087 -5.4819 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 2.9353 2.9525 4.5658 26 1 3.7118 4.4768 2.7210 27 1 4.2275 5.5113 0.8503 28 1 3.2379 3.5460 -2.1891 29 1 1.4515 3.7561 -4.3064 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396330168.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:41 Heat of formation + Delta-G solvation = -50.634729 kcal Electronic energy + Delta-G solvation = -17048.907918 eV Core-core repulsion = 14221.144101 eV Total energy + Delta-G solvation = -2827.763816 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.70811 -39.58975 -38.15842 -36.73072 -34.41817 -31.41481 -30.62323 -27.91053 -27.23445 -24.85921 -24.24353 -21.71750 -21.29871 -19.67676 -18.37459 -17.64830 -17.38469 -16.94234 -16.22196 -16.03354 -15.63181 -15.26121 -15.14273 -15.13514 -14.42562 -14.06178 -13.86802 -13.39190 -13.13659 -12.92270 -12.70287 -12.60694 -12.16547 -12.01776 -11.70629 -11.51214 -11.03577 -10.63670 -10.60679 -10.12822 -9.27080 -8.94105 -8.46674 -6.43374 -0.37812 0.40437 0.88180 1.25119 1.34988 1.38592 1.47775 1.59083 1.74106 2.10843 2.60960 3.09417 3.51200 3.59800 4.08843 4.37842 4.46715 4.56819 4.65506 4.73947 4.75206 4.83936 4.95678 5.03216 5.15579 5.26027 5.57640 5.70703 5.78689 5.90450 6.20914 6.47705 6.59293 6.63532 7.05520 8.05282 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.019507 B = 0.008821 C = 0.006279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.062978 B = 3173.431432 C = 4458.126812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.336 6.336 3 C -0.031 4.031 4 C -0.122 4.122 5 S 0.047 5.953 6 C -0.232 4.232 7 C -0.099 4.099 8 C -0.155 4.155 9 C -0.173 4.173 10 C 0.394 3.606 11 O -0.511 6.511 12 C -0.065 4.065 13 C 0.066 3.934 14 C -0.445 4.445 15 H 0.088 0.912 16 C 0.033 3.967 17 N -0.804 5.804 18 Si 0.988 3.012 19 H -0.254 1.254 20 H -0.264 1.264 21 H -0.258 1.258 22 H 0.108 0.892 23 H 0.034 0.966 24 H 0.028 0.972 25 H 0.194 0.806 26 H 0.168 0.832 27 H 0.148 0.852 28 H 0.121 0.879 29 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.143 -0.315 7.059 7.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.253 6.253 3 C -0.082 4.082 4 C -0.237 4.237 5 S 0.308 5.692 6 C -0.365 4.365 7 C -0.128 4.128 8 C -0.162 4.162 9 C -0.177 4.177 10 C 0.257 3.743 11 O -0.388 6.388 12 C -0.084 4.084 13 C 0.060 3.940 14 C -0.473 4.473 15 H 0.106 0.894 16 C -0.185 4.185 17 N -0.428 5.428 18 Si 0.808 3.192 19 H -0.177 1.177 20 H -0.188 1.188 21 H -0.182 1.182 22 H 0.126 0.874 23 H 0.053 0.947 24 H 0.047 0.953 25 H 0.211 0.789 26 H 0.185 0.815 27 H 0.164 0.836 28 H 0.139 0.861 29 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.620 -1.213 7.126 7.255 hybrid contribution 0.157 0.963 -1.509 1.797 sum -0.463 -0.250 5.617 5.641 Atomic orbital electron populations 1.22932 0.80956 1.02913 0.99283 1.85864 1.19506 1.25797 1.94148 1.17828 1.08735 0.91839 0.89813 1.22884 1.05515 0.98531 0.96771 1.83704 1.65693 1.24029 0.95732 1.25317 1.09477 0.97945 1.03792 1.19909 1.01852 1.01884 0.89169 1.18865 1.09282 0.94928 0.93153 1.21759 1.05446 0.98524 0.91933 1.24288 0.72244 0.84113 0.93637 1.90492 1.44875 1.65472 1.37968 1.21701 0.94286 0.95150 0.97292 1.17889 0.91539 0.91840 0.92761 1.19789 1.39084 0.95819 0.92594 0.89428 1.26955 0.90982 0.95056 1.05550 1.69846 1.30232 1.08524 1.34219 0.85130 0.80461 0.79020 0.74623 1.17742 1.18824 1.18240 0.87422 0.94743 0.95348 0.78883 0.81496 0.83570 0.86083 0.89081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.32 11.13 113.37 1.26 2.58 15 2 O -0.34 -15.79 9.53 -87.39 -0.83 -16.63 15 3 C -0.03 -1.54 5.75 23.28 0.13 -1.40 15 4 C -0.12 -5.45 6.40 22.98 0.15 -5.30 15 5 S 0.05 1.67 23.25 -56.49 -1.31 0.35 15 6 C -0.23 -6.73 11.12 66.64 0.74 -5.99 15 7 C -0.10 -3.09 9.76 21.49 0.21 -2.89 15 8 C -0.15 -6.39 6.03 -19.93 -0.12 -6.51 15 9 C -0.17 -7.68 6.06 -18.53 -0.11 -7.79 15 10 C 0.39 14.69 11.27 69.95 0.79 15.48 15 11 O -0.51 -22.75 17.12 -3.30 -0.06 -22.81 15 12 C -0.06 -3.33 8.15 22.87 0.19 -3.14 15 13 C 0.07 3.47 5.55 -21.38 -0.12 3.35 15 14 C -0.45 -22.99 8.64 23.33 0.20 -22.79 15 15 H 0.09 4.47 7.60 -2.91 -0.02 4.45 15 16 C 0.03 1.56 5.11 85.21 0.44 2.00 15 17 N -0.80 -40.30 11.00 21.81 0.24 -40.06 15 18 Si 0.99 36.36 29.59 68.60 2.03 38.39 15 19 H -0.25 -8.95 7.11 99.48 0.71 -8.24 15 20 H -0.26 -9.17 7.11 99.48 0.71 -8.47 15 21 H -0.26 -9.41 7.11 99.48 0.71 -8.70 15 22 H 0.11 3.34 8.14 -2.39 -0.02 3.33 15 23 H 0.03 1.27 8.14 -2.39 -0.02 1.25 15 24 H 0.03 1.17 8.14 -2.39 -0.02 1.15 15 25 H 0.19 3.95 8.06 -2.91 -0.02 3.92 15 26 H 0.17 3.78 7.39 -2.91 -0.02 3.76 15 27 H 0.15 3.69 7.30 -2.91 -0.02 3.67 15 28 H 0.12 6.66 5.72 -2.91 -0.02 6.64 15 29 H 0.30 13.55 8.30 -92.71 -0.77 12.78 15 Total: -1.00 -62.63 275.58 5.01 -57.63 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: 1.19 Total: 15.54 kcal Atomic # 6 Polarization: -36.16 SS G_CDS: 3.75 Total: -32.41 kcal Atomic # 7 Polarization: -40.30 SS G_CDS: 0.24 Total: -40.06 kcal Atomic # 8 Polarization: -38.55 SS G_CDS: -0.89 Total: -39.44 kcal Atomic # 14 Polarization: 36.36 SS G_CDS: 2.03 Total: 38.39 kcal Atomic # 16 Polarization: 1.67 SS G_CDS: -1.31 Total: 0.35 kcal Total: -62.63 5.01 -57.63 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396330168.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.991 kcal (2) G-P(sol) polarization free energy of solvation -62.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds