Wall clock time and date at job start Mon Mar 30 2020 06:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50696 * 109.47069 * 2 1 4 4 C 1.31699 * 124.24322 * 90.00199 * 3 2 1 5 5 C 1.45571 * 114.88984 * 180.02562 * 4 3 2 6 6 C 1.40535 * 129.18653 * 179.97438 * 5 4 3 7 7 C 1.39908 * 119.97952 * 179.97438 * 6 5 4 8 8 C 1.41272 * 120.05587 * 180.02562 * 7 6 5 9 9 H 1.08004 * 119.99738 * 149.75742 * 8 7 6 10 10 C 1.39853 * 120.00276 * 329.76034 * 8 7 6 11 11 N 1.30901 * 120.00517 * 161.93295 * 10 8 7 12 12 Si 1.86803 * 119.99858 * 341.93461 * 10 8 7 13 13 H 1.48504 * 109.47073 * 95.39474 * 12 10 8 14 14 H 1.48500 * 109.47061 * 215.39416 * 12 10 8 15 15 H 1.48499 * 109.47157 * 335.39119 * 12 10 8 16 16 C 1.41160 * 119.88336 * 359.82400 * 7 6 5 17 17 C 1.50701 * 119.94726 * 180.23776 * 16 7 6 18 18 O 1.42902 * 109.47172 * 180.15623 * 17 16 7 19 19 C 1.35671 * 120.10426 * 0.39409 * 16 7 6 20 20 C 1.40148 * 111.77970 * 359.97438 * 5 4 3 21 21 S 1.75267 * 124.24366 * 270.02161 * 3 2 1 22 22 H 1.09001 * 109.46972 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47420 * 300.00069 * 1 2 3 24 24 H 1.09002 * 109.46868 * 60.00269 * 1 2 3 25 25 H 1.09003 * 109.46964 * 240.00127 * 2 1 3 26 26 H 1.08997 * 109.47467 * 120.00125 * 2 1 3 27 27 H 1.08003 * 122.55786 * 0.03809 * 4 3 2 28 28 H 1.07997 * 120.00836 * 0.02562 * 6 5 4 29 29 H 0.96993 * 120.00019 * 179.97438 * 11 10 8 30 30 H 1.08996 * 109.47244 * 300.16140 * 17 16 7 31 31 H 1.08999 * 109.46850 * 60.15782 * 17 16 7 32 32 H 0.96692 * 114.00215 * 180.02562 * 18 17 16 33 33 H 1.07999 * 119.58879 * 179.83911 * 19 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2794 2.1195 1.0887 5 6 2.7576 3.4739 0.8521 6 6 3.1081 4.4670 1.7826 7 6 3.5502 5.7175 1.3373 8 6 3.9034 6.7169 2.2712 9 1 4.6607 7.4455 2.0219 10 6 3.2726 6.7627 3.5186 11 7 3.8165 7.4325 4.5030 12 14 1.6537 5.8681 3.7799 13 1 1.9170 4.5299 4.3675 14 1 0.7971 6.6544 4.7035 15 1 0.9602 5.7087 2.4765 16 6 3.6467 5.9773 -0.0469 17 6 4.1279 7.3219 -0.5281 18 8 4.1350 7.3419 -1.9570 19 6 3.3040 5.0196 -0.9446 20 6 2.8582 3.7582 -0.5165 21 16 2.3605 2.3508 -1.4488 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 2.1382 1.7181 2.0814 28 1 3.0369 4.2648 2.8411 29 1 3.3788 7.4646 5.3679 30 1 3.4613 8.1005 -0.1572 31 1 5.1371 7.5007 -0.1572 32 1 4.4349 8.1788 -2.3372 33 1 3.3786 5.2282 -2.0016 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396330648.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:42 Heat of formation + Delta-G solvation = -33.002783 kcal Electronic energy + Delta-G solvation = -16964.137439 eV Core-core repulsion = 14272.971296 eV Total energy + Delta-G solvation = -2691.166143 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.64314 -36.57975 -35.42335 -33.74549 -32.26402 -30.32968 -28.81738 -25.88792 -24.83585 -22.95840 -21.94120 -20.31496 -19.22576 -17.33718 -16.95328 -16.40966 -15.17290 -14.84008 -14.56029 -14.24346 -13.71527 -13.59585 -13.49902 -13.11737 -12.79276 -12.44908 -12.14110 -12.02951 -11.66941 -11.34696 -11.04366 -10.88384 -10.85150 -10.53975 -10.29942 -10.16453 -9.75341 -9.63474 -9.40501 -9.16321 -8.47654 -7.40057 -7.05894 -6.89167 -4.58683 1.63632 2.36466 2.44263 2.89425 2.99392 3.09222 3.25894 3.29290 3.92286 4.34428 4.83241 4.95272 5.19108 5.20072 5.41456 5.63704 5.81102 5.85960 5.88579 5.98146 6.09074 6.21819 6.25208 6.27956 6.40561 6.57962 6.63345 6.86447 7.02628 7.12581 7.34680 7.39915 7.68189 7.87150 8.12807 8.22758 8.45262 8.66247 9.95435 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.017623 B = 0.008150 C = 0.005866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.437263 B = 3434.885164 C = 4772.390533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.051 4.051 3 C -0.163 4.163 4 C -0.123 4.123 5 C -0.028 4.028 6 C -0.221 4.221 7 C 0.100 3.900 8 C -0.444 4.444 9 H 0.095 0.905 10 C 0.087 3.913 11 N -0.803 5.803 12 Si 0.908 3.092 13 H -0.269 1.269 14 H -0.290 1.290 15 H -0.243 1.243 16 C -0.145 4.145 17 C 0.138 3.862 18 O -0.578 6.578 19 C -0.032 4.032 20 C -0.229 4.229 21 S 0.015 5.985 22 H 0.055 0.945 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.128 0.872 28 H 0.106 0.894 29 H 0.287 0.713 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.371 0.629 33 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.597 -6.474 -5.920 9.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.090 4.090 3 C -0.278 4.278 4 C -0.155 4.155 5 C -0.034 4.034 6 C -0.244 4.244 7 C 0.096 3.904 8 C -0.472 4.472 9 H 0.112 0.888 10 C -0.133 4.133 11 N -0.427 5.427 12 Si 0.735 3.265 13 H -0.195 1.195 14 H -0.218 1.218 15 H -0.166 1.166 16 C -0.148 4.148 17 C 0.061 3.939 18 O -0.383 6.383 19 C -0.054 4.054 20 C -0.343 4.343 21 S 0.276 5.724 22 H 0.075 0.925 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.088 0.912 26 H 0.094 0.906 27 H 0.146 0.854 28 H 0.124 0.876 29 H 0.097 0.903 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.216 0.784 33 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -3.896 -7.299 -7.090 10.897 hybrid contribution -0.281 0.612 1.883 2.000 sum -4.178 -6.687 -5.207 9.449 Atomic orbital electron populations 1.21773 0.94774 1.01292 1.02572 1.20076 0.95898 0.90506 1.02569 1.23561 1.07961 0.99905 0.96393 1.20895 1.02627 0.93689 0.98272 1.18953 0.99074 0.92811 0.92514 1.20682 1.13974 0.92978 0.96721 1.17244 0.90118 0.92047 0.91034 1.19410 1.19350 1.12073 0.96384 0.88751 1.26134 0.99331 0.93390 0.94459 1.69712 1.37147 1.33450 1.02358 0.86322 0.81463 0.78724 0.80013 1.19495 1.21781 1.16614 1.19212 1.07928 0.94533 0.93117 1.20683 0.99122 0.95518 0.78601 1.86432 1.90452 1.40033 1.21382 1.19572 0.97129 0.89930 0.98789 1.21919 1.18621 0.98746 0.94984 1.83340 1.73427 1.06639 1.09029 0.92548 0.92426 0.92404 0.91174 0.90635 0.85403 0.87586 0.90276 0.92697 0.93154 0.78357 0.86929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.89 37.16 0.37 -1.36 16 2 C -0.05 -0.68 6.36 -27.89 -0.18 -0.85 16 3 C -0.16 -2.86 5.62 -36.19 -0.20 -3.07 16 4 C -0.12 -2.43 10.21 -38.54 -0.39 -2.82 16 5 C -0.03 -0.64 6.03 -105.39 -0.64 -1.27 16 6 C -0.22 -5.43 7.23 -38.09 -0.28 -5.71 16 7 C 0.10 2.48 5.09 -107.01 -0.54 1.94 16 8 C -0.44 -11.39 8.92 -37.83 -0.34 -11.73 16 9 H 0.09 2.47 7.26 -52.48 -0.38 2.09 16 10 C 0.09 2.19 5.40 -17.34 -0.09 2.10 16 11 N -0.80 -20.60 13.93 55.54 0.77 -19.83 16 12 Si 0.91 20.58 24.52 -169.99 -4.17 16.41 16 13 H -0.27 -5.95 6.72 56.52 0.38 -5.57 16 14 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 15 H -0.24 -5.76 6.87 56.52 0.39 -5.37 16 16 C -0.14 -3.35 5.89 -104.43 -0.61 -3.97 16 17 C 0.14 2.68 6.27 36.01 0.23 2.91 16 18 O -0.58 -9.92 12.09 -35.23 -0.43 -10.35 16 19 C -0.03 -0.73 9.34 -39.66 -0.37 -1.10 16 20 C -0.23 -5.15 6.51 -38.03 -0.25 -5.40 16 21 S 0.01 0.28 23.19 -107.50 -2.49 -2.21 16 22 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.13 2.26 8.06 -52.48 -0.42 1.83 16 28 H 0.11 2.58 4.74 -52.49 -0.25 2.33 16 29 H 0.29 6.69 8.30 -40.82 -0.34 6.35 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.05 0.95 7.79 -51.93 -0.40 0.55 16 32 H 0.37 4.24 9.12 45.56 0.42 4.66 16 33 H 0.11 2.42 6.91 -52.49 -0.36 2.06 16 LS Contribution 288.21 15.07 4.34 4.34 Total: -1.00 -28.37 288.21 -8.38 -36.75 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -3.11 Total: 5.22 kcal Atomic # 6 Polarization: -27.03 SS G_CDS: -3.30 Total: -30.33 kcal Atomic # 7 Polarization: -20.60 SS G_CDS: 0.77 Total: -19.83 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: -0.43 Total: -10.35 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.17 Total: 16.41 kcal Atomic # 16 Polarization: 0.28 SS G_CDS: -2.49 Total: -2.21 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.37 -8.38 -36.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396330648.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.750 kcal (2) G-P(sol) polarization free energy of solvation -28.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds