Wall clock time and date at job start Mon Mar 30 2020 06:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50696 * 109.47069 * 2 1 4 4 C 1.31699 * 124.24322 * 90.00199 * 3 2 1 5 5 C 1.45571 * 114.88984 * 180.02562 * 4 3 2 6 6 C 1.40535 * 129.18653 * 179.97438 * 5 4 3 7 7 C 1.39908 * 119.97952 * 179.97438 * 6 5 4 8 8 C 1.41272 * 120.05587 * 180.02562 * 7 6 5 9 9 H 1.08004 * 119.99738 * 149.75742 * 8 7 6 10 10 C 1.39853 * 120.00276 * 329.76034 * 8 7 6 11 11 N 1.30901 * 120.00517 * 161.93295 * 10 8 7 12 12 Si 1.86803 * 119.99858 * 341.93461 * 10 8 7 13 13 H 1.48504 * 109.47073 * 95.39474 * 12 10 8 14 14 H 1.48500 * 109.47061 * 215.39416 * 12 10 8 15 15 H 1.48499 * 109.47157 * 335.39119 * 12 10 8 16 16 C 1.41160 * 119.88336 * 359.82400 * 7 6 5 17 17 C 1.50701 * 119.94726 * 180.23776 * 16 7 6 18 18 O 1.42902 * 109.47172 * 180.15623 * 17 16 7 19 19 C 1.35671 * 120.10426 * 0.39409 * 16 7 6 20 20 C 1.40148 * 111.77970 * 359.97438 * 5 4 3 21 21 S 1.75267 * 124.24366 * 270.02161 * 3 2 1 22 22 H 1.09001 * 109.46972 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47420 * 300.00069 * 1 2 3 24 24 H 1.09002 * 109.46868 * 60.00269 * 1 2 3 25 25 H 1.09003 * 109.46964 * 240.00127 * 2 1 3 26 26 H 1.08997 * 109.47467 * 120.00125 * 2 1 3 27 27 H 1.08003 * 122.55786 * 0.03809 * 4 3 2 28 28 H 1.07997 * 120.00836 * 0.02562 * 6 5 4 29 29 H 0.96993 * 120.00019 * 179.97438 * 11 10 8 30 30 H 1.08996 * 109.47244 * 300.16140 * 17 16 7 31 31 H 1.08999 * 109.46850 * 60.15782 * 17 16 7 32 32 H 0.96692 * 114.00215 * 180.02562 * 18 17 16 33 33 H 1.07999 * 119.58879 * 179.83911 * 19 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2794 2.1195 1.0887 5 6 2.7576 3.4739 0.8521 6 6 3.1081 4.4670 1.7826 7 6 3.5502 5.7175 1.3373 8 6 3.9034 6.7169 2.2712 9 1 4.6607 7.4455 2.0219 10 6 3.2726 6.7627 3.5186 11 7 3.8165 7.4325 4.5030 12 14 1.6537 5.8681 3.7799 13 1 1.9170 4.5299 4.3675 14 1 0.7971 6.6544 4.7035 15 1 0.9602 5.7087 2.4765 16 6 3.6467 5.9773 -0.0469 17 6 4.1279 7.3219 -0.5281 18 8 4.1350 7.3419 -1.9570 19 6 3.3040 5.0196 -0.9446 20 6 2.8582 3.7582 -0.5165 21 16 2.3605 2.3508 -1.4488 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 2.1382 1.7181 2.0814 28 1 3.0369 4.2648 2.8411 29 1 3.3788 7.4646 5.3679 30 1 3.4613 8.1005 -0.1572 31 1 5.1371 7.5007 -0.1572 32 1 4.4349 8.1788 -2.3372 33 1 3.3786 5.2282 -2.0016 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396330648.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:42 Heat of formation + Delta-G solvation = -50.362289 kcal Electronic energy + Delta-G solvation = -16964.890204 eV Core-core repulsion = 14272.971296 eV Total energy + Delta-G solvation = -2691.918908 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.35786 -38.03494 -36.89383 -35.48509 -33.71416 -32.13862 -30.28576 -27.65249 -26.33673 -24.29257 -23.69872 -21.83137 -20.88523 -19.14437 -18.49591 -17.92854 -16.95635 -16.35315 -16.00447 -15.78928 -15.33955 -15.05516 -14.92009 -14.69027 -14.32758 -14.16859 -13.63617 -13.46775 -13.22428 -12.78438 -12.73491 -12.37414 -12.28205 -12.08436 -11.78313 -11.68542 -11.47459 -11.37155 -11.05146 -10.82333 -10.20712 -9.10817 -8.95906 -8.53013 -6.50971 0.01329 0.60377 0.84198 1.22048 1.25610 1.27730 1.44886 1.57233 2.08933 2.48946 3.33014 3.45079 3.70032 4.11009 4.21268 4.22696 4.43185 4.46090 4.58393 4.62786 4.71003 4.78513 4.87976 4.94184 5.05260 5.06947 5.23236 5.29117 5.34679 5.37271 5.60302 5.65069 5.86526 6.08128 6.26883 6.58488 6.75715 6.99033 8.10717 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.017623 B = 0.008150 C = 0.005866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.437263 B = 3434.885164 C = 4772.390533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.053 4.053 3 C -0.140 4.140 4 C -0.154 4.154 5 C -0.044 4.044 6 C -0.241 4.241 7 C 0.084 3.916 8 C -0.467 4.467 9 H 0.077 0.923 10 C 0.059 3.941 11 N -0.836 5.836 12 Si 0.955 3.045 13 H -0.262 1.262 14 H -0.275 1.275 15 H -0.263 1.263 16 C -0.160 4.160 17 C 0.147 3.853 18 O -0.583 6.583 19 C -0.040 4.040 20 C -0.249 4.249 21 S 0.053 5.947 22 H 0.085 0.915 23 H 0.049 0.951 24 H 0.051 0.949 25 H 0.088 0.912 26 H 0.095 0.905 27 H 0.146 0.854 28 H 0.101 0.899 29 H 0.295 0.705 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.397 0.603 33 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.786 -8.779 -7.166 12.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.092 4.092 3 C -0.256 4.256 4 C -0.185 4.185 5 C -0.050 4.050 6 C -0.263 4.263 7 C 0.080 3.920 8 C -0.496 4.496 9 H 0.095 0.905 10 C -0.158 4.158 11 N -0.461 5.461 12 Si 0.779 3.221 13 H -0.188 1.188 14 H -0.201 1.201 15 H -0.187 1.187 16 C -0.163 4.163 17 C 0.070 3.930 18 O -0.392 6.392 19 C -0.061 4.061 20 C -0.364 4.364 21 S 0.314 5.686 22 H 0.104 0.896 23 H 0.068 0.932 24 H 0.070 0.930 25 H 0.106 0.894 26 H 0.113 0.887 27 H 0.163 0.837 28 H 0.119 0.881 29 H 0.106 0.894 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.247 0.753 33 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.074 -9.582 -8.348 13.684 hybrid contribution 0.086 1.178 2.037 2.354 sum -4.989 -8.404 -6.311 11.634 Atomic orbital electron populations 1.21769 0.93451 1.03084 1.01905 1.20303 0.96866 0.87550 1.04460 1.24189 1.04871 1.01498 0.95030 1.20994 1.04871 0.92618 1.00020 1.19348 0.98880 0.94183 0.92614 1.20774 1.15019 0.93551 0.96939 1.17422 0.90576 0.92127 0.91886 1.19389 1.20153 1.12659 0.97392 0.90533 1.26616 1.01121 0.93885 0.94185 1.69720 1.38398 1.35020 1.03007 0.85620 0.78891 0.78476 0.79068 1.18767 1.20145 1.18717 1.19613 1.07623 0.96383 0.92720 1.20454 0.98989 0.93672 0.79887 1.86355 1.90688 1.42333 1.19816 1.19773 0.97006 0.90133 0.99220 1.22423 1.17762 1.00161 0.96018 1.83189 1.72332 1.04399 1.08678 0.89604 0.93198 0.93022 0.89358 0.88675 0.83679 0.88132 0.89399 0.92603 0.92979 0.75311 0.85853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.89 71.98 0.71 -2.12 16 2 C -0.05 -1.16 6.36 29.85 0.19 -0.97 16 3 C -0.14 -4.50 5.62 25.00 0.14 -4.36 16 4 C -0.15 -5.81 10.21 23.47 0.24 -5.57 16 5 C -0.04 -2.00 6.03 -20.36 -0.12 -2.12 16 6 C -0.24 -12.02 7.23 23.24 0.17 -11.85 16 7 C 0.08 4.29 5.09 -21.41 -0.11 4.18 16 8 C -0.47 -24.92 8.92 23.41 0.21 -24.71 16 9 H 0.08 4.22 7.26 -2.91 -0.02 4.20 16 10 C 0.06 3.04 5.40 85.22 0.46 3.50 16 11 N -0.84 -44.00 13.93 21.81 0.30 -43.69 16 12 Si 0.95 43.09 24.52 68.60 1.68 44.77 16 13 H -0.26 -11.38 6.72 99.48 0.67 -10.72 16 14 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 15 H -0.26 -12.59 6.87 99.48 0.68 -11.90 16 16 C -0.16 -7.52 5.89 -19.74 -0.12 -7.64 16 17 C 0.15 5.77 6.27 71.24 0.45 6.22 16 18 O -0.58 -19.30 12.09 -148.98 -1.80 -21.10 16 19 C -0.04 -1.78 9.34 22.22 0.21 -1.57 16 20 C -0.25 -11.02 6.51 23.28 0.15 -10.87 16 21 S 0.05 1.85 23.19 -56.49 -1.31 0.54 16 22 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.05 1.07 8.14 -2.39 -0.02 1.06 16 25 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.15 4.85 8.06 -2.91 -0.02 4.82 16 28 H 0.10 5.00 4.74 -2.91 -0.01 4.98 16 29 H 0.30 14.02 8.30 -92.71 -0.77 13.25 16 30 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.05 2.01 7.79 -2.39 -0.02 1.99 16 32 H 0.40 8.36 9.12 -74.06 -0.68 7.69 16 33 H 0.12 5.17 6.91 -2.91 -0.02 5.15 16 Total: -1.00 -61.68 288.21 1.85 -59.82 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: 0.40 Total: 17.55 kcal Atomic # 6 Polarization: -60.46 SS G_CDS: 2.58 Total: -57.88 kcal Atomic # 7 Polarization: -44.00 SS G_CDS: 0.30 Total: -43.69 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -1.80 Total: -21.10 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 1.68 Total: 44.77 kcal Atomic # 16 Polarization: 1.85 SS G_CDS: -1.31 Total: 0.54 kcal Total: -61.68 1.85 -59.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396330648.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.462 kcal (2) G-P(sol) polarization free energy of solvation -61.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds