Wall clock time and date at job start Mon Mar 30 2020 06:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35868 * 116.99771 * 2 1 4 4 C 1.35999 * 119.66427 * 0.02971 * 3 2 1 5 5 C 1.41009 * 120.13350 * 179.97438 * 4 3 2 6 6 C 1.41101 * 120.14286 * 180.02562 * 5 4 3 7 7 H 1.08003 * 119.99784 * 334.35865 * 6 5 4 8 8 C 1.39866 * 120.00181 * 154.36754 * 6 5 4 9 9 N 1.30883 * 119.99945 * 343.09907 * 8 6 5 10 10 Si 1.86802 * 120.00139 * 163.10751 * 8 6 5 11 11 H 1.48505 * 109.46841 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47445 * 119.99298 * 10 8 6 13 13 H 1.48496 * 109.47124 * 239.99958 * 10 8 6 14 14 C 1.40373 * 119.71899 * 359.97037 * 5 4 3 15 15 C 1.39144 * 120.11031 * 0.02677 * 14 5 4 16 16 S 1.75828 * 130.13706 * 180.29073 * 15 14 5 17 17 C 1.69987 * 93.12414 * 180.02562 * 16 15 14 18 18 C 1.35867 * 112.04215 * 359.64608 * 17 16 15 19 19 C 1.41809 * 123.15712 * 180.26657 * 18 17 16 20 20 O 1.21401 * 119.99386 * 180.02562 * 19 18 17 21 21 C 1.39807 * 119.82754 * 359.97438 * 15 14 5 22 22 H 1.08995 * 109.46967 * 299.99416 * 1 2 3 23 23 H 1.08995 * 109.47057 * 59.99768 * 1 2 3 24 24 H 1.09003 * 109.46481 * 179.97438 * 1 2 3 25 25 H 1.08004 * 119.93354 * 359.97289 * 4 3 2 26 26 H 0.97002 * 120.00209 * 180.02562 * 9 8 6 27 27 H 1.07997 * 119.94521 * 180.02562 * 14 5 4 28 28 H 1.07996 * 123.97762 * 179.90968 * 17 16 15 29 29 H 1.07996 * 120.00289 * 0.02680 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2106 0.0000 4 6 1.2984 2.3468 0.0006 5 6 1.9282 3.6084 0.0012 6 6 1.1529 4.7874 0.0023 7 1 0.1515 4.7755 -0.4019 8 6 1.6814 5.9714 0.5269 9 7 2.7343 5.9306 1.3032 10 14 0.8842 7.6110 0.1197 11 1 -0.2825 7.3863 -0.7713 12 1 0.4314 8.2662 1.3730 13 1 1.8701 8.4837 -0.5670 14 6 3.3297 3.6866 0.0017 15 6 4.0937 2.5236 0.0011 16 16 5.8394 2.3143 0.0084 17 6 5.7294 0.6180 0.0012 18 6 4.4397 0.1907 0.0013 19 6 4.0768 -1.1802 0.0014 20 8 2.9051 -1.4978 0.0011 21 6 3.4618 1.2765 0.0006 22 1 -0.3633 0.5137 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3632 -1.0277 -0.0005 25 1 0.2203 2.2827 0.0007 26 1 3.1006 6.7517 1.6673 27 1 3.8159 4.6509 0.0025 28 1 6.5840 -0.0423 0.0012 29 1 4.8427 -1.9415 0.0019 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396330660.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:06 Heat of formation + Delta-G solvation = -32.165312 kcal Electronic energy + Delta-G solvation = -17038.226298 eV Core-core repulsion = 14211.263376 eV Total energy + Delta-G solvation = -2826.962922 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.33994 -37.99633 -36.54934 -34.81163 -32.81320 -29.42702 -28.75839 -26.71405 -25.16624 -24.75686 -21.56008 -20.94736 -18.82879 -18.16749 -16.64848 -16.03626 -15.49967 -15.16295 -14.81477 -14.75015 -14.14771 -13.59831 -13.57768 -13.28972 -12.70239 -12.29729 -12.15517 -11.65873 -11.56553 -11.29349 -10.94364 -10.76770 -10.62110 -10.54734 -10.00011 -9.81132 -9.69675 -9.12416 -8.95447 -8.13021 -7.54458 -7.01211 -6.48781 -4.56038 1.28991 2.41572 2.45306 2.81231 2.88048 2.96117 2.98568 3.01959 3.74978 3.80454 4.35299 4.43507 5.01497 5.39334 5.45306 5.77805 5.83779 6.01980 6.12253 6.18103 6.40304 6.58057 6.71717 6.80414 6.86525 7.04175 7.30469 7.59545 7.67397 7.91541 8.19798 8.22997 8.41855 8.60904 8.74713 9.92471 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.022575 B = 0.007575 C = 0.005773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.034007 B = 3695.432493 C = 4849.346361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.281 6.281 3 C 0.184 3.816 4 C -0.289 4.289 5 C 0.149 3.851 6 C -0.439 4.439 7 H 0.085 0.915 8 C 0.073 3.927 9 N -0.774 5.774 10 Si 0.913 3.087 11 H -0.258 1.258 12 H -0.272 1.272 13 H -0.269 1.269 14 C -0.175 4.175 15 C -0.077 4.077 16 S 0.102 5.898 17 C -0.240 4.240 18 C -0.143 4.143 19 C 0.375 3.625 20 O -0.428 6.428 21 C -0.193 4.193 22 H 0.045 0.955 23 H 0.044 0.956 24 H 0.084 0.916 25 H 0.110 0.890 26 H 0.286 0.714 27 H 0.126 0.874 28 H 0.156 0.844 29 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.501 -4.275 -1.570 5.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.194 6.194 3 C 0.136 3.864 4 C -0.310 4.310 5 C 0.143 3.857 6 C -0.468 4.468 7 H 0.103 0.897 8 C -0.147 4.147 9 N -0.398 5.398 10 Si 0.737 3.263 11 H -0.181 1.181 12 H -0.197 1.197 13 H -0.194 1.194 14 C -0.202 4.202 15 C -0.192 4.192 16 S 0.368 5.632 17 C -0.376 4.376 18 C -0.159 4.159 19 C 0.232 3.768 20 O -0.301 6.301 21 C -0.197 4.197 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.102 0.898 25 H 0.128 0.872 26 H 0.097 0.903 27 H 0.143 0.857 28 H 0.174 0.826 29 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.389 -3.580 -1.407 5.126 hybrid contribution -1.459 -0.005 -0.007 1.459 sum 1.929 -3.584 -1.414 4.309 Atomic orbital electron populations 1.22869 0.81725 1.01948 1.00471 1.86599 1.18443 1.26217 1.88102 1.18296 0.89776 0.84303 0.93990 1.20795 0.98428 0.92282 1.19456 1.17202 0.91260 0.91441 0.85781 1.19663 1.01186 0.92726 1.33234 0.89672 1.26023 0.94470 1.01678 0.92555 1.69859 1.18812 1.30760 1.20324 0.86166 0.80280 0.80400 0.79461 1.18138 1.19698 1.19374 1.20570 0.92992 0.94706 1.11899 1.22102 0.94670 0.96724 1.05685 1.82439 1.04433 0.98844 1.77528 1.24894 0.99627 1.01080 1.12041 1.19846 0.92428 0.96423 1.07193 1.22224 0.91463 0.90026 0.73112 1.90612 1.21843 1.84554 1.33079 1.17531 0.89936 0.90618 1.21660 0.93655 0.93749 0.89803 0.87164 0.90324 0.85657 0.82648 0.90354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 9.80 101.05 0.99 1.45 15 2 O -0.28 -6.31 6.36 -44.58 -0.28 -6.60 15 3 C 0.18 4.46 6.70 -39.04 -0.26 4.20 15 4 C -0.29 -7.06 8.69 -39.34 -0.34 -7.40 15 5 C 0.15 3.87 5.56 -106.96 -0.59 3.27 15 6 C -0.44 -10.97 9.03 -37.89 -0.34 -11.31 15 7 H 0.09 2.02 7.90 -52.48 -0.41 1.60 15 8 C 0.07 1.73 5.14 -17.35 -0.09 1.64 15 9 N -0.77 -18.91 10.96 55.54 0.61 -18.30 15 10 Si 0.91 17.43 29.59 -169.99 -5.03 12.40 15 11 H -0.26 -4.87 7.11 56.52 0.40 -4.47 15 12 H -0.27 -5.12 7.11 56.52 0.40 -4.71 15 13 H -0.27 -5.06 7.11 56.52 0.40 -4.66 15 14 C -0.18 -4.48 8.71 -38.44 -0.33 -4.82 15 15 C -0.08 -1.84 6.42 -38.66 -0.25 -2.09 15 16 S 0.10 1.94 22.97 -107.50 -2.47 -0.53 15 17 C -0.24 -4.21 10.65 29.88 0.32 -3.89 15 18 C -0.14 -2.90 5.83 -106.22 -0.62 -3.52 15 19 C 0.38 6.79 11.30 32.10 0.36 7.15 15 20 O -0.43 -9.11 13.56 -19.81 -0.27 -9.38 15 21 C -0.19 -4.63 6.04 -104.81 -0.63 -5.27 15 22 H 0.04 0.77 7.63 -51.93 -0.40 0.38 15 23 H 0.04 0.74 7.63 -51.93 -0.40 0.34 15 24 H 0.08 1.25 8.14 -51.93 -0.42 0.83 15 25 H 0.11 2.47 6.16 -52.48 -0.32 2.14 15 26 H 0.29 6.27 8.30 -40.82 -0.34 5.93 15 27 H 0.13 3.26 6.17 -52.49 -0.32 2.94 15 28 H 0.16 2.07 8.06 -52.49 -0.42 1.64 15 29 H 0.08 1.04 8.06 -52.49 -0.42 0.62 15 LS Contribution 266.66 15.07 4.02 4.02 Total: -1.00 -28.91 266.66 -7.47 -36.38 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -2.26 Total: 2.59 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: -1.79 Total: -20.58 kcal Atomic # 7 Polarization: -18.91 SS G_CDS: 0.61 Total: -18.30 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.55 Total: -15.98 kcal Atomic # 14 Polarization: 17.43 SS G_CDS: -5.03 Total: 12.40 kcal Atomic # 16 Polarization: 1.94 SS G_CDS: -2.47 Total: -0.53 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -28.91 -7.47 -36.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396330660.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.214 kcal (2) G-P(sol) polarization free energy of solvation -28.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds