Wall clock time and date at job start Mon Mar 30 2020 06:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35868 * 116.99771 * 2 1 4 4 C 1.35999 * 119.66427 * 0.02971 * 3 2 1 5 5 C 1.41009 * 120.13350 * 179.97438 * 4 3 2 6 6 C 1.41101 * 120.14286 * 180.02562 * 5 4 3 7 7 H 1.08003 * 119.99784 * 334.35865 * 6 5 4 8 8 C 1.39866 * 120.00181 * 154.36754 * 6 5 4 9 9 N 1.30883 * 119.99945 * 343.09907 * 8 6 5 10 10 Si 1.86802 * 120.00139 * 163.10751 * 8 6 5 11 11 H 1.48505 * 109.46841 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47445 * 119.99298 * 10 8 6 13 13 H 1.48496 * 109.47124 * 239.99958 * 10 8 6 14 14 C 1.40373 * 119.71899 * 359.97037 * 5 4 3 15 15 C 1.39144 * 120.11031 * 0.02677 * 14 5 4 16 16 S 1.75828 * 130.13706 * 180.29073 * 15 14 5 17 17 C 1.69987 * 93.12414 * 180.02562 * 16 15 14 18 18 C 1.35867 * 112.04215 * 359.64608 * 17 16 15 19 19 C 1.41809 * 123.15712 * 180.26657 * 18 17 16 20 20 O 1.21401 * 119.99386 * 180.02562 * 19 18 17 21 21 C 1.39807 * 119.82754 * 359.97438 * 15 14 5 22 22 H 1.08995 * 109.46967 * 299.99416 * 1 2 3 23 23 H 1.08995 * 109.47057 * 59.99768 * 1 2 3 24 24 H 1.09003 * 109.46481 * 179.97438 * 1 2 3 25 25 H 1.08004 * 119.93354 * 359.97289 * 4 3 2 26 26 H 0.97002 * 120.00209 * 180.02562 * 9 8 6 27 27 H 1.07997 * 119.94521 * 180.02562 * 14 5 4 28 28 H 1.07996 * 123.97762 * 179.90968 * 17 16 15 29 29 H 1.07996 * 120.00289 * 0.02680 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2106 0.0000 4 6 1.2984 2.3468 0.0006 5 6 1.9282 3.6084 0.0012 6 6 1.1529 4.7874 0.0023 7 1 0.1515 4.7755 -0.4019 8 6 1.6814 5.9714 0.5269 9 7 2.7343 5.9306 1.3032 10 14 0.8842 7.6110 0.1197 11 1 -0.2825 7.3863 -0.7713 12 1 0.4314 8.2662 1.3730 13 1 1.8701 8.4837 -0.5670 14 6 3.3297 3.6866 0.0017 15 6 4.0937 2.5236 0.0011 16 16 5.8394 2.3143 0.0084 17 6 5.7294 0.6180 0.0012 18 6 4.4397 0.1907 0.0013 19 6 4.0768 -1.1802 0.0014 20 8 2.9051 -1.4978 0.0011 21 6 3.4618 1.2765 0.0006 22 1 -0.3633 0.5137 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3632 -1.0277 -0.0005 25 1 0.2203 2.2827 0.0007 26 1 3.1006 6.7517 1.6673 27 1 3.8159 4.6509 0.0025 28 1 6.5840 -0.0423 0.0012 29 1 4.8427 -1.9415 0.0019 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396330660.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:06 Heat of formation + Delta-G solvation = -48.034276 kcal Electronic energy + Delta-G solvation = -17038.914428 eV Core-core repulsion = 14211.263376 eV Total energy + Delta-G solvation = -2827.651052 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.98606 -39.51322 -38.24525 -36.48930 -34.52800 -31.16683 -30.50554 -28.31925 -26.89038 -26.21535 -23.28596 -22.68474 -20.37323 -19.90029 -18.34353 -17.58622 -17.16018 -16.80152 -16.42280 -16.32235 -15.84271 -15.13278 -15.07561 -14.87840 -14.39623 -13.95318 -13.79026 -13.25762 -13.14171 -12.85526 -12.65273 -12.35759 -12.25443 -12.09729 -11.71117 -11.52045 -11.42286 -10.85612 -10.36993 -9.80332 -9.29901 -8.75689 -8.20533 -6.41874 -0.17145 0.65832 0.81800 1.03680 1.27456 1.37801 1.44764 1.53728 2.15950 2.26184 2.70660 2.75563 3.53402 3.74757 4.04065 4.38224 4.41796 4.46039 4.65999 4.74684 4.80581 4.85428 4.99229 5.04451 5.16707 5.26623 5.57614 5.76090 5.86759 6.06342 6.40597 6.62802 6.77779 6.87258 6.97393 8.21677 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.022575 B = 0.007575 C = 0.005773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.034007 B = 3695.432493 C = 4849.346361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.291 6.291 3 C 0.169 3.831 4 C -0.304 4.304 5 C 0.119 3.881 6 C -0.476 4.476 7 H 0.084 0.916 8 C 0.036 3.964 9 N -0.810 5.810 10 Si 0.988 3.012 11 H -0.256 1.256 12 H -0.264 1.264 13 H -0.262 1.262 14 C -0.201 4.201 15 C -0.110 4.110 16 S 0.148 5.852 17 C -0.194 4.194 18 C -0.183 4.183 19 C 0.380 3.620 20 O -0.469 6.469 21 C -0.215 4.215 22 H 0.046 0.954 23 H 0.049 0.951 24 H 0.114 0.886 25 H 0.118 0.882 26 H 0.293 0.707 27 H 0.110 0.890 28 H 0.215 0.785 29 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.352 -5.529 -1.772 7.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.203 6.203 3 C 0.122 3.878 4 C -0.325 4.325 5 C 0.113 3.887 6 C -0.505 4.505 7 H 0.102 0.898 8 C -0.181 4.181 9 N -0.435 5.435 10 Si 0.807 3.193 11 H -0.179 1.179 12 H -0.188 1.188 13 H -0.186 1.186 14 C -0.228 4.228 15 C -0.224 4.224 16 S 0.414 5.586 17 C -0.330 4.330 18 C -0.198 4.198 19 C 0.239 3.761 20 O -0.345 6.345 21 C -0.219 4.219 22 H 0.064 0.936 23 H 0.067 0.933 24 H 0.132 0.868 25 H 0.135 0.865 26 H 0.104 0.896 27 H 0.128 0.872 28 H 0.232 0.768 29 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 5.236 -4.842 -1.608 7.311 hybrid contribution -1.821 0.192 0.061 1.832 sum 3.416 -4.651 -1.547 5.974 Atomic orbital electron populations 1.23128 0.79741 1.03995 1.00768 1.86593 1.20587 1.25259 1.87899 1.18546 0.90614 0.84748 0.93937 1.20944 0.98969 0.92368 1.20219 1.17561 0.92052 0.92374 0.86726 1.19870 1.01594 0.93836 1.35225 0.89764 1.26856 0.94836 1.04752 0.91644 1.69905 1.20254 1.32058 1.21245 0.85072 0.79260 0.75565 0.79353 1.17936 1.18824 1.18633 1.20475 0.93303 0.94824 1.14150 1.22538 0.98088 0.96379 1.05380 1.82315 1.00010 1.00012 1.76309 1.25617 1.00416 1.00888 1.06062 1.20169 0.92490 0.97186 1.09967 1.22983 0.92060 0.89959 0.71137 1.90601 1.23946 1.84776 1.35171 1.18165 0.90792 0.92210 1.20779 0.93566 0.93250 0.86808 0.86462 0.89577 0.87186 0.76832 0.83649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.67 9.80 113.37 1.11 1.78 15 2 O -0.29 -13.20 6.36 -67.92 -0.43 -13.63 15 3 C 0.17 8.46 6.70 22.62 0.15 8.61 15 4 C -0.30 -15.67 8.69 22.43 0.19 -15.47 15 5 C 0.12 6.51 5.56 -21.38 -0.12 6.39 15 6 C -0.48 -25.16 9.03 23.37 0.21 -24.95 15 7 H 0.08 4.24 7.90 -2.91 -0.02 4.22 15 8 C 0.04 1.77 5.14 85.23 0.44 2.21 15 9 N -0.81 -41.24 10.96 21.81 0.24 -41.00 15 10 Si 0.99 36.58 29.59 68.60 2.03 38.61 15 11 H -0.26 -9.27 7.11 99.48 0.71 -8.56 15 12 H -0.26 -9.33 7.11 99.48 0.71 -8.62 15 13 H -0.26 -9.31 7.11 99.48 0.71 -8.60 15 14 C -0.20 -10.82 8.71 23.01 0.20 -10.62 15 15 C -0.11 -5.29 6.42 22.87 0.15 -5.14 15 16 S 0.15 5.27 22.97 -56.49 -1.30 3.97 15 17 C -0.19 -5.83 10.65 67.27 0.72 -5.11 15 18 C -0.18 -6.89 5.83 -20.90 -0.12 -7.01 15 19 C 0.38 12.39 11.30 68.70 0.78 13.17 15 20 O -0.47 -19.23 13.56 20.74 0.28 -18.95 15 21 C -0.21 -10.32 6.04 -19.98 -0.12 -10.44 15 22 H 0.05 1.61 7.63 -2.39 -0.02 1.59 15 23 H 0.05 1.68 7.63 -2.39 -0.02 1.66 15 24 H 0.11 3.29 8.14 -2.39 -0.02 3.27 15 25 H 0.12 5.57 6.16 -2.91 -0.02 5.56 15 26 H 0.29 13.30 8.30 -92.71 -0.77 12.53 15 27 H 0.11 6.08 6.17 -2.91 -0.02 6.06 15 28 H 0.21 3.94 8.06 -2.91 -0.02 3.91 15 29 H 0.15 2.87 8.06 -2.91 -0.02 2.85 15 Total: -1.00 -67.32 266.66 5.60 -61.72 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: 1.19 Total: 15.86 kcal Atomic # 6 Polarization: -50.18 SS G_CDS: 3.58 Total: -46.59 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: 0.24 Total: -41.00 kcal Atomic # 8 Polarization: -32.43 SS G_CDS: -0.15 Total: -32.58 kcal Atomic # 14 Polarization: 36.58 SS G_CDS: 2.03 Total: 38.61 kcal Atomic # 16 Polarization: 5.27 SS G_CDS: -1.30 Total: 3.97 kcal Total: -67.32 5.60 -61.72 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396330660.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.690 kcal (2) G-P(sol) polarization free energy of solvation -67.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds