Wall clock time and date at job start Mon Mar 30 2020 06:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35781 * 116.99955 * 2 1 4 4 C 1.37990 * 119.83646 * 0.02562 * 3 2 1 5 5 C 1.38514 * 120.20430 * 179.97438 * 4 3 2 6 6 C 1.37580 * 120.21739 * 0.02562 * 5 4 3 7 7 C 1.40115 * 120.61329 * 0.02562 * 6 5 4 8 8 S 1.75876 * 129.56487 * 180.02562 * 7 6 5 9 9 C 1.75171 * 92.83545 * 179.76774 * 8 7 6 10 10 C 1.41040 * 124.65251 * 180.22564 * 9 8 7 11 11 O 1.21514 * 120.00237 * 176.81263 * 10 9 8 12 12 C 1.38972 * 110.69315 * 0.31813 * 9 8 7 13 13 C 1.39562 * 123.36487 * 179.89709 * 12 9 8 14 14 H 1.07995 * 119.99456 * 308.10067 * 13 12 9 15 15 C 1.40658 * 120.00321 * 127.82458 * 13 12 9 16 16 N 1.30444 * 120.00006 * 159.78385 * 15 13 12 17 17 Si 1.86802 * 119.99830 * 339.78903 * 15 13 12 18 18 H 1.48497 * 109.47403 * 90.86894 * 17 15 13 19 19 H 1.48495 * 109.46919 * 210.87125 * 17 15 13 20 20 H 1.48505 * 109.47019 * 330.86705 * 17 15 13 21 21 C 1.39382 * 119.60767 * 359.97205 * 7 6 5 22 22 H 1.08999 * 109.46961 * 60.00025 * 1 2 3 23 23 H 1.08998 * 109.46861 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47019 * 300.00259 * 1 2 3 25 25 H 1.08006 * 119.89344 * 359.97438 * 4 3 2 26 26 H 1.08004 * 119.89248 * 179.97438 * 5 4 3 27 27 H 1.08004 * 119.69171 * 180.02562 * 6 5 4 28 28 H 1.08002 * 120.00552 * 356.81395 * 10 9 8 29 29 H 0.97003 * 120.00377 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2098 0.0000 4 6 1.2906 2.3649 0.0005 5 6 1.9114 3.6031 0.0011 6 6 3.2845 3.6892 0.0005 7 6 4.0721 2.5303 -0.0011 8 16 5.8231 2.3658 -0.0014 9 6 5.7458 0.6158 0.0033 10 6 6.8695 -0.2365 0.0096 11 8 6.7184 -1.4407 0.0711 12 6 4.4253 0.1826 -0.0021 13 6 4.0594 -1.1642 -0.0021 14 1 4.4781 -1.8374 -0.7355 15 6 3.1497 -1.6459 0.9565 16 7 2.5064 -2.7603 0.7430 17 14 2.8630 -0.6895 2.5353 18 1 1.7412 0.2636 2.3400 19 1 2.5257 -1.6331 3.6312 20 1 4.0943 0.0611 2.8899 21 6 3.4569 1.2796 -0.0016 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.2122 2.3033 0.0005 26 1 1.3157 4.5040 0.0011 27 1 3.7598 4.6590 0.0014 28 1 7.8643 0.1809 -0.0401 29 1 1.8788 -3.0924 1.4039 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396330834.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:08 Heat of formation + Delta-G solvation = -24.987712 kcal Electronic energy + Delta-G solvation = -17634.011664 eV Core-core repulsion = 14807.359986 eV Total energy + Delta-G solvation = -2826.651678 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.72985 -37.53084 -36.79934 -34.64276 -32.84541 -29.63110 -29.08013 -27.20177 -26.70946 -23.27928 -22.05718 -20.89232 -18.90624 -17.93058 -16.98975 -16.07645 -15.65903 -15.37280 -14.95593 -14.66837 -14.58484 -13.42949 -13.33922 -13.02164 -12.85908 -12.50553 -12.30723 -12.06324 -11.69742 -11.38357 -11.28598 -10.78247 -10.63290 -10.39733 -10.20585 -9.94132 -9.78519 -9.19188 -8.27356 -8.11102 -7.64619 -7.15565 -6.68306 -4.60306 1.31047 1.82275 2.54982 2.67854 3.03051 3.06031 3.23125 3.38605 3.89459 3.92652 4.16346 4.28990 4.90401 5.19882 5.30696 5.43293 5.48247 5.61052 5.79442 5.83540 5.89176 6.05746 6.42305 6.62851 6.77280 6.79580 6.85539 7.09796 7.33982 7.71264 7.97066 8.15603 8.32251 8.53293 9.19935 9.81292 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.016073 B = 0.014696 C = 0.008838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.687682 B = 1904.772782 C = 3167.544665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.277 6.277 3 C 0.175 3.825 4 C -0.242 4.242 5 C -0.069 4.069 6 C -0.147 4.147 7 C -0.069 4.069 8 S 0.019 5.981 9 C -0.442 4.442 10 C 0.386 3.614 11 O -0.509 6.509 12 C 0.123 3.877 13 C -0.339 4.339 14 H 0.111 0.889 15 C 0.111 3.889 16 N -0.757 5.757 17 Si 0.899 3.101 18 H -0.255 1.255 19 H -0.278 1.278 20 H -0.249 1.249 21 C -0.111 4.111 22 H 0.051 0.949 23 H 0.096 0.904 24 H 0.048 0.952 25 H 0.124 0.876 26 H 0.122 0.878 27 H 0.119 0.881 28 H 0.049 0.951 29 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.831 8.817 0.859 10.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.189 6.189 3 C 0.127 3.873 4 C -0.265 4.265 5 C -0.090 4.090 6 C -0.171 4.171 7 C -0.185 4.185 8 S 0.279 5.721 9 C -0.558 4.558 10 C 0.256 3.744 11 O -0.394 6.394 12 C 0.113 3.887 13 C -0.367 4.367 14 H 0.128 0.872 15 C -0.115 4.115 16 N -0.379 5.379 17 Si 0.723 3.277 18 H -0.180 1.180 19 H -0.204 1.204 20 H -0.172 1.172 21 C -0.120 4.120 22 H 0.070 0.930 23 H 0.115 0.885 24 H 0.066 0.934 25 H 0.142 0.858 26 H 0.140 0.860 27 H 0.137 0.863 28 H 0.065 0.935 29 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.674 8.694 0.916 9.913 hybrid contribution -1.652 -0.268 0.562 1.765 sum -6.326 8.426 1.478 10.639 Atomic orbital electron populations 1.23017 0.80255 1.03575 1.00473 1.86468 1.19627 1.25752 1.87035 1.18947 0.90503 0.84596 0.93248 1.20845 0.99378 0.92256 1.13993 1.20554 0.93772 0.96542 0.98104 1.20330 0.93048 0.95958 1.07812 1.22461 0.98161 0.95463 1.02425 1.82875 0.98892 1.06277 1.84010 1.22827 0.98356 0.93234 1.41371 1.20498 0.90406 0.88258 0.75223 1.90512 1.89106 1.17158 1.42584 1.17568 0.88326 0.92273 0.90545 1.19233 1.14154 0.93079 1.10194 0.87169 1.26144 0.90449 0.94311 1.00565 1.69519 1.15331 1.18698 1.34308 0.86482 0.81247 0.80580 0.79433 1.18007 1.20415 1.17222 1.19208 0.90662 0.93819 1.08315 0.93045 0.88546 0.93372 0.85803 0.86043 0.86342 0.93488 0.89921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.80 101.05 0.99 1.33 15 2 O -0.28 -5.82 5.48 -19.05 -0.10 -5.93 15 3 C 0.18 3.71 5.03 -38.50 -0.19 3.52 15 4 C -0.24 -4.21 9.01 -39.57 -0.36 -4.56 15 5 C -0.07 -1.10 10.02 -39.72 -0.40 -1.49 15 6 C -0.15 -2.58 10.06 -39.12 -0.39 -2.97 15 7 C -0.07 -1.47 6.42 -38.45 -0.25 -1.72 15 8 S 0.02 0.39 23.11 -107.50 -2.48 -2.09 15 9 C -0.44 -11.03 6.24 -38.25 -0.24 -11.27 15 10 C 0.39 9.49 11.41 31.79 0.36 9.85 15 11 O -0.51 -14.24 15.60 5.35 0.08 -14.16 15 12 C 0.12 3.20 4.41 -105.88 -0.47 2.73 15 13 C -0.34 -9.35 7.46 -38.17 -0.28 -9.64 15 14 H 0.11 3.34 7.53 -52.49 -0.40 2.95 15 15 C 0.11 2.86 3.58 -17.23 -0.06 2.80 15 16 N -0.76 -19.03 13.91 55.59 0.77 -18.26 15 17 Si 0.90 20.78 24.67 -169.99 -4.19 16.59 15 18 H -0.26 -5.54 5.94 56.52 0.34 -5.20 15 19 H -0.28 -6.07 7.11 56.52 0.40 -5.67 15 20 H -0.25 -6.18 7.11 56.52 0.40 -5.78 15 21 C -0.11 -2.61 4.81 -105.05 -0.51 -3.11 15 22 H 0.05 0.68 7.64 -51.93 -0.40 0.28 15 23 H 0.10 1.36 8.14 -51.93 -0.42 0.93 15 24 H 0.05 0.66 7.64 -51.93 -0.40 0.26 15 25 H 0.12 1.76 6.23 -52.48 -0.33 1.44 15 26 H 0.12 1.46 8.06 -52.48 -0.42 1.03 15 27 H 0.12 1.74 8.06 -52.48 -0.42 1.32 15 28 H 0.05 1.01 8.06 -52.49 -0.42 0.58 15 29 H 0.29 6.51 8.29 -40.82 -0.34 6.17 15 LS Contribution 260.83 15.07 3.93 3.93 Total: -1.00 -29.92 260.83 -6.20 -36.12 By element: Atomic # 1 Polarization: 0.72 SS G_CDS: -2.41 Total: -1.68 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -1.79 Total: -14.52 kcal Atomic # 7 Polarization: -19.03 SS G_CDS: 0.77 Total: -18.26 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.02 Total: -20.08 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.19 Total: 16.59 kcal Atomic # 16 Polarization: 0.39 SS G_CDS: -2.48 Total: -2.09 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -29.92 -6.20 -36.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396330834.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.129 kcal (2) G-P(sol) polarization free energy of solvation -29.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds