Wall clock time and date at job start Mon Mar 30 2020 06:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35781 * 116.99955 * 2 1 4 4 C 1.37990 * 119.83646 * 0.02562 * 3 2 1 5 5 C 1.38514 * 120.20430 * 179.97438 * 4 3 2 6 6 C 1.37580 * 120.21739 * 0.02562 * 5 4 3 7 7 C 1.40115 * 120.61329 * 0.02562 * 6 5 4 8 8 S 1.75876 * 129.56487 * 180.02562 * 7 6 5 9 9 C 1.75171 * 92.83545 * 179.76774 * 8 7 6 10 10 C 1.41040 * 124.65251 * 180.22564 * 9 8 7 11 11 O 1.21514 * 120.00237 * 176.81263 * 10 9 8 12 12 C 1.38972 * 110.69315 * 0.31813 * 9 8 7 13 13 C 1.39562 * 123.36487 * 179.89709 * 12 9 8 14 14 H 1.07995 * 119.99456 * 308.10067 * 13 12 9 15 15 C 1.40658 * 120.00321 * 127.82458 * 13 12 9 16 16 N 1.30444 * 120.00006 * 159.78385 * 15 13 12 17 17 Si 1.86802 * 119.99830 * 339.78903 * 15 13 12 18 18 H 1.48497 * 109.47403 * 90.86894 * 17 15 13 19 19 H 1.48495 * 109.46919 * 210.87125 * 17 15 13 20 20 H 1.48505 * 109.47019 * 330.86705 * 17 15 13 21 21 C 1.39382 * 119.60767 * 359.97205 * 7 6 5 22 22 H 1.08999 * 109.46961 * 60.00025 * 1 2 3 23 23 H 1.08998 * 109.46861 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47019 * 300.00259 * 1 2 3 25 25 H 1.08006 * 119.89344 * 359.97438 * 4 3 2 26 26 H 1.08004 * 119.89248 * 179.97438 * 5 4 3 27 27 H 1.08004 * 119.69171 * 180.02562 * 6 5 4 28 28 H 1.08002 * 120.00552 * 356.81395 * 10 9 8 29 29 H 0.97003 * 120.00377 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2098 0.0000 4 6 1.2906 2.3649 0.0005 5 6 1.9114 3.6031 0.0011 6 6 3.2845 3.6892 0.0005 7 6 4.0721 2.5303 -0.0011 8 16 5.8231 2.3658 -0.0014 9 6 5.7458 0.6158 0.0033 10 6 6.8695 -0.2365 0.0096 11 8 6.7184 -1.4407 0.0711 12 6 4.4253 0.1826 -0.0021 13 6 4.0594 -1.1642 -0.0021 14 1 4.4781 -1.8374 -0.7355 15 6 3.1497 -1.6459 0.9565 16 7 2.5064 -2.7603 0.7430 17 14 2.8630 -0.6895 2.5353 18 1 1.7412 0.2636 2.3400 19 1 2.5257 -1.6331 3.6312 20 1 4.0943 0.0611 2.8899 21 6 3.4569 1.2796 -0.0016 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.2122 2.3033 0.0005 26 1 1.3157 4.5040 0.0011 27 1 3.7598 4.6590 0.0014 28 1 7.8643 0.1809 -0.0401 29 1 1.8788 -3.0924 1.4039 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396330834.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:08 Heat of formation + Delta-G solvation = -44.612119 kcal Electronic energy + Delta-G solvation = -17634.862643 eV Core-core repulsion = 14807.359986 eV Total energy + Delta-G solvation = -2827.502656 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.20058 -39.44701 -38.34506 -36.43102 -34.63785 -31.11174 -30.62678 -29.01136 -28.08428 -24.99715 -23.54251 -22.51314 -20.72105 -19.53028 -18.69332 -17.70483 -17.34216 -16.81082 -16.51182 -16.32099 -16.10803 -15.30445 -14.96279 -14.73609 -14.54353 -14.18341 -14.04431 -13.66787 -13.21143 -12.95092 -12.88716 -12.27916 -12.25737 -11.98222 -11.85477 -11.57156 -11.40905 -11.01862 -10.23610 -9.74110 -9.28511 -9.03667 -8.31332 -6.56040 -0.34711 0.38080 0.96553 0.99934 1.16368 1.24723 1.37533 1.56667 2.06007 2.27249 2.54703 2.72964 3.04931 3.74557 4.01742 4.16693 4.29247 4.29657 4.40581 4.54038 4.57058 4.71420 4.88274 4.96500 5.16962 5.32522 5.43927 5.49752 5.78606 5.86804 6.07693 6.42324 6.52361 6.63475 7.24727 8.00460 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.016073 B = 0.014696 C = 0.008838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.687682 B = 1904.772782 C = 3167.544665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.311 6.311 3 C 0.158 3.842 4 C -0.234 4.234 5 C -0.045 4.045 6 C -0.147 4.147 7 C -0.087 4.087 8 S 0.063 5.937 9 C -0.476 4.476 10 C 0.380 3.620 11 O -0.552 6.552 12 C 0.120 3.880 13 C -0.385 4.385 14 H 0.058 0.942 15 C 0.095 3.905 16 N -0.787 5.787 17 Si 0.941 3.059 18 H -0.229 1.229 19 H -0.260 1.260 20 H -0.282 1.282 21 C -0.159 4.159 22 H 0.074 0.926 23 H 0.100 0.900 24 H 0.069 0.931 25 H 0.161 0.839 26 H 0.176 0.824 27 H 0.153 0.847 28 H 0.093 0.907 29 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.049 12.732 1.589 15.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.224 6.224 3 C 0.110 3.890 4 C -0.256 4.256 5 C -0.065 4.065 6 C -0.172 4.172 7 C -0.202 4.202 8 S 0.323 5.677 9 C -0.591 4.591 10 C 0.253 3.747 11 O -0.440 6.440 12 C 0.110 3.890 13 C -0.414 4.414 14 H 0.076 0.924 15 C -0.128 4.128 16 N -0.410 5.410 17 Si 0.762 3.238 18 H -0.152 1.152 19 H -0.185 1.185 20 H -0.207 1.207 21 C -0.168 4.168 22 H 0.093 0.907 23 H 0.118 0.882 24 H 0.087 0.913 25 H 0.179 0.821 26 H 0.194 0.806 27 H 0.171 0.829 28 H 0.110 0.890 29 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.914 12.610 1.634 14.474 hybrid contribution -0.973 -1.301 0.250 1.644 sum -7.886 11.309 1.884 13.915 Atomic orbital electron populations 1.23339 0.77719 1.04734 1.02548 1.86421 1.22393 1.26453 1.87091 1.19229 0.90018 0.85968 0.93777 1.21363 1.01119 0.91393 1.11742 1.21221 0.93409 0.97892 0.94021 1.20823 0.93840 0.95907 1.06599 1.22850 0.98239 0.96203 1.02956 1.82415 0.99444 1.01737 1.84089 1.23329 0.98491 0.96786 1.40488 1.21211 0.92273 0.87621 0.73601 1.90494 1.89935 1.19176 1.44379 1.17930 0.89766 0.92687 0.88619 1.18937 1.17020 0.93486 1.11960 0.92448 1.26515 0.89751 0.94856 1.01711 1.69504 1.16315 1.19602 1.35609 0.85903 0.80444 0.80203 0.77227 1.15189 1.18462 1.20690 1.19231 0.91994 0.93498 1.12091 0.90723 0.88171 0.91256 0.82128 0.80631 0.82945 0.89048 0.88716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.31 9.80 113.37 1.11 1.42 15 2 O -0.31 -12.76 5.48 -91.10 -0.50 -13.26 15 3 C 0.16 6.37 5.03 22.97 0.12 6.48 15 4 C -0.23 -6.93 9.01 22.28 0.20 -6.73 15 5 C -0.05 -1.13 10.02 22.18 0.22 -0.91 15 6 C -0.15 -4.42 10.06 22.57 0.23 -4.20 15 7 C -0.09 -3.49 6.42 23.00 0.15 -3.34 15 8 S 0.06 2.55 23.11 -56.49 -1.31 1.24 15 9 C -0.48 -24.38 6.24 23.13 0.14 -24.23 15 10 C 0.38 19.37 11.41 68.51 0.78 20.16 15 11 O -0.55 -32.89 15.60 -3.76 -0.06 -32.95 15 12 C 0.12 6.51 4.41 -20.68 -0.09 6.42 15 13 C -0.39 -22.81 7.46 23.18 0.17 -22.64 15 14 H 0.06 3.88 7.53 -2.91 -0.02 3.85 15 15 C 0.10 5.11 3.58 85.49 0.31 5.41 15 16 N -0.79 -41.39 13.91 21.95 0.31 -41.08 15 17 Si 0.94 43.17 24.67 68.60 1.69 44.87 15 18 H -0.23 -9.33 5.94 99.48 0.59 -8.74 15 19 H -0.26 -10.89 7.11 99.48 0.71 -10.19 15 20 H -0.28 -14.27 7.11 99.48 0.71 -13.56 15 21 C -0.16 -7.43 4.81 -20.14 -0.10 -7.53 15 22 H 0.07 1.70 7.64 -2.39 -0.02 1.68 15 23 H 0.10 2.67 8.14 -2.39 -0.02 2.65 15 24 H 0.07 1.61 7.64 -2.39 -0.02 1.59 15 25 H 0.16 3.51 6.23 -2.91 -0.02 3.49 15 26 H 0.18 2.62 8.06 -2.91 -0.02 2.60 15 27 H 0.15 3.52 8.06 -2.91 -0.02 3.50 15 28 H 0.09 3.83 8.06 -2.91 -0.02 3.80 15 29 H 0.30 13.91 8.29 -92.71 -0.77 13.14 15 Total: -1.00 -71.49 260.83 4.45 -67.05 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: 1.07 Total: 3.82 kcal Atomic # 6 Polarization: -32.92 SS G_CDS: 3.24 Total: -29.68 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: 0.31 Total: -41.08 kcal Atomic # 8 Polarization: -45.65 SS G_CDS: -0.56 Total: -46.21 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 1.69 Total: 44.87 kcal Atomic # 16 Polarization: 2.55 SS G_CDS: -1.31 Total: 1.24 kcal Total: -71.49 4.45 -67.05 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396330834.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.434 kcal (2) G-P(sol) polarization free energy of solvation -71.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds