Wall clock time and date at job start Mon Mar 30 2020 06:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35371 * 116.99869 * 2 1 4 4 C 1.41470 * 120.10850 * 89.99880 * 3 2 1 5 5 C 1.40918 * 119.82132 * 0.02562 * 4 3 2 6 6 H 1.07996 * 120.00271 * 329.94257 * 5 4 3 7 7 C 1.39906 * 119.99811 * 149.66427 * 5 4 3 8 8 N 1.30903 * 119.99750 * 161.84995 * 7 5 4 9 9 Si 1.86799 * 120.00079 * 341.84906 * 7 5 4 10 10 H 1.48496 * 109.47371 * 95.38834 * 9 7 5 11 11 H 1.48497 * 109.47111 * 215.39014 * 9 7 5 12 12 H 1.48502 * 109.47092 * 335.38698 * 9 7 5 13 13 C 1.40090 * 120.35633 * 180.29291 * 4 3 2 14 14 C 1.38841 * 121.24955 * 359.43877 * 13 4 3 15 15 S 1.76135 * 130.29490 * 180.23901 * 14 13 4 16 16 C 1.75490 * 91.51455 * 180.29262 * 15 14 13 17 17 C 1.32828 * 110.71591 * 0.02562 * 16 15 14 18 18 C 1.39821 * 115.90663 * 359.97438 * 17 16 15 19 19 C 1.39197 * 120.10203 * 270.01670 * 3 2 1 20 20 C 1.46148 * 120.19983 * 359.96025 * 19 3 2 21 21 O 1.21385 * 120.00315 * 359.97438 * 20 19 3 22 22 H 1.09001 * 109.46678 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46983 * 300.00310 * 1 2 3 24 24 H 1.08998 * 109.46656 * 60.00601 * 1 2 3 25 25 H 0.97005 * 119.99696 * 180.02562 * 8 7 5 26 26 H 1.08002 * 119.37607 * 179.72716 * 13 4 3 27 27 H 1.07996 * 124.64229 * 180.02562 * 16 15 14 28 28 H 1.08003 * 122.04469 * 180.02562 * 17 16 15 29 29 H 1.08002 * 120.00099 * 179.97438 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0436 1.2062 0.0000 4 6 2.3657 1.8385 1.2238 5 6 2.0456 1.2091 2.4434 6 1 1.1876 0.5562 2.5052 7 6 2.8427 1.4256 3.5726 8 7 2.3772 1.1509 4.7647 9 14 4.5714 2.1066 3.3790 10 1 4.5464 3.5800 3.5619 11 1 5.4610 1.4962 4.3993 12 1 5.0810 1.7849 2.0218 13 6 2.9961 3.0895 1.2299 14 6 3.3303 3.7334 0.0461 15 16 4.1204 5.2844 -0.2233 16 6 4.0195 5.0862 -1.9640 17 6 3.4326 3.9353 -2.2726 18 6 3.0303 3.1455 -1.1913 19 6 2.3602 1.8284 -1.2042 20 6 2.0319 1.1830 -2.4737 21 8 1.4819 0.1009 -2.4802 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5137 -0.8900 25 1 2.9297 1.3014 5.5477 26 1 3.2309 3.5599 2.1733 27 1 4.3846 5.8020 -2.6856 28 1 3.2764 3.6280 -3.2962 29 1 2.2787 1.6688 -3.4062 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396330903.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:17 Heat of formation + Delta-G solvation = -29.633454 kcal Electronic energy + Delta-G solvation = -17229.071818 eV Core-core repulsion = 14402.218686 eV Total energy + Delta-G solvation = -2826.853133 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.52400 -37.61685 -37.05256 -34.87042 -33.05512 -30.36926 -29.18331 -26.68854 -25.02476 -23.96353 -22.36311 -20.74840 -19.64995 -17.73312 -17.15460 -16.39622 -15.83533 -15.20649 -14.86112 -14.75954 -14.36903 -13.94108 -13.45808 -13.18320 -12.95696 -12.66889 -12.58404 -12.31966 -11.75350 -11.43068 -11.12136 -10.95964 -10.70696 -10.31742 -10.02861 -9.88066 -9.47049 -9.41723 -8.78512 -8.72040 -7.66193 -7.34766 -7.10914 -4.75736 1.01907 1.80283 2.30941 2.72436 2.82059 2.95159 3.04892 3.07568 3.24986 3.75007 4.11232 4.51749 4.80161 5.01233 5.48681 5.64350 5.86114 5.91376 5.96946 6.06707 6.13749 6.20553 6.40290 6.53985 6.61623 6.74765 6.95115 7.17413 7.25178 7.44883 7.85000 7.95948 8.02895 8.29974 8.51043 9.63547 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.014952 B = 0.011872 C = 0.007063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.220618 B = 2357.881393 C = 3963.632213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 O -0.314 6.314 3 C 0.125 3.875 4 C 0.065 3.935 5 C -0.388 4.388 6 H 0.104 0.896 7 C 0.080 3.920 8 N -0.776 5.776 9 Si 0.910 3.090 10 H -0.264 1.264 11 H -0.283 1.283 12 H -0.239 1.239 13 C -0.218 4.218 14 C -0.059 4.059 15 S 0.020 5.980 16 C -0.257 4.257 17 C -0.080 4.080 18 C -0.166 4.166 19 C -0.158 4.158 20 C 0.378 3.622 21 O -0.459 6.459 22 H 0.083 0.917 23 H 0.043 0.957 24 H 0.035 0.965 25 H 0.294 0.706 26 H 0.110 0.890 27 H 0.151 0.849 28 H 0.126 0.874 29 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.239 4.264 -6.715 8.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.230 6.230 3 C 0.079 3.921 4 C 0.058 3.942 5 C -0.415 4.415 6 H 0.121 0.879 7 C -0.144 4.144 8 N -0.397 5.397 9 Si 0.735 3.265 10 H -0.189 1.189 11 H -0.210 1.210 12 H -0.161 1.161 13 C -0.245 4.245 14 C -0.174 4.174 15 S 0.281 5.719 16 C -0.390 4.390 17 C -0.110 4.110 18 C -0.173 4.173 19 C -0.162 4.162 20 C 0.238 3.762 21 O -0.334 6.334 22 H 0.101 0.899 23 H 0.061 0.939 24 H 0.054 0.946 25 H 0.105 0.895 26 H 0.128 0.872 27 H 0.169 0.831 28 H 0.143 0.857 29 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.586 4.616 -5.575 7.410 hybrid contribution 0.137 -0.360 -0.704 0.803 sum 1.723 4.256 -6.279 7.779 Atomic orbital electron populations 1.22730 0.79964 1.02090 0.99584 1.85831 1.18899 1.24300 1.93986 1.19156 0.96917 0.85059 0.90968 1.17703 0.92776 0.91034 0.92651 1.19576 1.10036 1.21087 0.90822 0.87862 1.26335 1.01743 0.92227 0.94080 1.69689 1.38157 1.32341 0.99505 0.86234 0.80251 0.79351 0.80651 1.18934 1.21006 1.16132 1.19954 1.13296 0.96595 0.94611 1.22173 1.01700 0.96539 0.97020 1.83804 1.64857 1.20579 1.02635 1.24627 1.13821 1.03269 0.97282 1.19551 0.99101 0.93885 0.98454 1.18343 1.11511 0.96042 0.91401 1.21622 1.05659 0.94443 0.94497 1.23516 0.74902 0.85340 0.92394 1.90526 1.31597 1.20581 1.90716 0.89885 0.93852 0.94640 0.89498 0.87209 0.83118 0.85654 0.89632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.95 10.27 101.05 1.04 1.99 15 2 O -0.31 -7.14 8.11 -39.99 -0.32 -7.46 15 3 C 0.12 2.88 5.74 -38.00 -0.22 2.66 15 4 C 0.07 1.58 5.08 -106.96 -0.54 1.04 15 5 C -0.39 -9.73 9.14 -37.94 -0.35 -10.08 15 6 H 0.10 2.68 7.12 -52.49 -0.37 2.30 15 7 C 0.08 1.93 5.38 -17.32 -0.09 1.83 15 8 N -0.78 -18.88 13.93 55.55 0.77 -18.11 15 9 Si 0.91 19.72 24.52 -169.99 -4.17 15.56 15 10 H -0.26 -5.55 6.72 56.52 0.38 -5.17 15 11 H -0.28 -5.85 7.11 56.52 0.40 -5.45 15 12 H -0.24 -5.43 6.88 56.52 0.39 -5.04 15 13 C -0.22 -5.09 7.11 -38.66 -0.27 -5.36 15 14 C -0.06 -1.28 6.45 -38.61 -0.25 -1.53 15 15 S 0.02 0.37 23.30 -107.50 -2.50 -2.14 15 16 C -0.26 -4.14 11.11 28.87 0.32 -3.81 15 17 C -0.08 -1.35 9.76 -40.85 -0.40 -1.75 15 18 C -0.17 -3.38 6.03 -104.65 -0.63 -4.02 15 19 C -0.16 -3.31 6.07 -102.47 -0.62 -3.93 15 20 C 0.38 6.86 11.27 33.90 0.38 7.24 15 21 O -0.46 -9.42 14.75 -16.72 -0.25 -9.67 15 22 H 0.08 1.35 8.14 -51.93 -0.42 0.93 15 23 H 0.04 0.80 7.58 -51.93 -0.39 0.41 15 24 H 0.03 0.64 7.48 -51.93 -0.39 0.25 15 25 H 0.29 6.43 8.30 -40.82 -0.34 6.09 15 26 H 0.11 2.55 4.73 -52.49 -0.25 2.30 15 27 H 0.15 1.95 8.06 -52.49 -0.42 1.52 15 28 H 0.13 1.70 7.40 -52.48 -0.39 1.31 15 29 H 0.09 1.20 7.30 -52.49 -0.38 0.82 15 LS Contribution 264.85 15.07 3.99 3.99 Total: -1.00 -26.97 264.85 -6.31 -33.27 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: -2.19 Total: 0.27 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: -1.64 Total: -15.71 kcal Atomic # 7 Polarization: -18.88 SS G_CDS: 0.77 Total: -18.11 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: -0.57 Total: -17.13 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -4.17 Total: 15.56 kcal Atomic # 16 Polarization: 0.37 SS G_CDS: -2.50 Total: -2.14 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -26.97 -6.31 -33.27 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396330903.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.641 kcal (2) G-P(sol) polarization free energy of solvation -26.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds