Wall clock time and date at job start Mon Mar 30 2020 06:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35226 * 117.00339 * 2 1 4 4 S 1.75159 * 124.53000 * 358.47709 * 3 2 1 5 5 C 1.75928 * 92.80195 * 180.02562 * 4 3 2 6 6 C 1.40181 * 129.57371 * 179.97438 * 5 4 3 7 7 C 1.36074 * 120.85423 * 179.14787 * 6 5 4 8 8 C 1.40384 * 120.08077 * 0.80917 * 7 6 5 9 9 C 1.46826 * 120.07824 * 179.45668 * 8 7 6 10 10 O 1.21297 * 119.99685 * 180.02562 * 9 8 7 11 11 C 1.39236 * 119.84447 * 359.47035 * 8 7 6 12 12 C 1.39663 * 110.54862 * 359.71922 * 5 4 3 13 13 C 1.37433 * 124.53327 * 178.51945 * 3 2 1 14 14 C 1.40580 * 123.23670 * 359.95947 * 13 3 2 15 15 H 1.07993 * 120.00083 * 144.78951 * 14 13 3 16 16 C 1.39630 * 119.99994 * 324.79519 * 14 13 3 17 17 N 1.31205 * 120.00309 * 157.05269 * 16 14 13 18 18 Si 1.86800 * 120.00066 * 336.78193 * 16 14 13 19 19 H 1.48495 * 109.47404 * 116.19136 * 18 16 14 20 20 H 1.48497 * 109.47002 * 236.19568 * 18 16 14 21 21 H 1.48499 * 109.47105 * 356.19137 * 18 16 14 22 22 H 1.09009 * 109.46789 * 60.00510 * 1 2 3 23 23 H 1.08999 * 109.47567 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47605 * 300.00894 * 1 2 3 25 25 H 1.08001 * 119.56721 * 0.02562 * 6 5 4 26 26 H 1.08002 * 119.95853 * 180.26198 * 7 6 5 27 27 H 1.07997 * 119.99786 * 0.02562 * 9 8 7 28 28 H 1.07994 * 119.92338 * 180.02562 * 11 8 7 29 29 H 0.96997 * 120.00819 * 179.72720 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0430 1.2048 0.0000 4 16 1.2085 2.7444 -0.0384 5 6 2.7120 3.6577 -0.0145 6 6 2.9146 5.0447 -0.0273 7 6 4.1705 5.5669 0.0130 8 6 5.2858 4.7152 0.0511 9 6 6.6413 5.2786 0.0825 10 8 7.6039 4.5413 0.1150 11 6 5.1036 3.3348 0.0587 12 6 3.8092 2.7947 0.0280 13 6 3.4051 1.3851 0.0293 14 6 4.3227 0.3206 0.0637 15 1 5.2662 0.4040 -0.4549 16 6 4.0140 -0.8446 0.7684 17 7 4.6060 -1.9742 0.4600 18 14 2.7637 -0.7939 2.1553 19 1 1.5947 -1.6375 1.7992 20 1 3.3853 -1.3099 3.4013 21 1 2.3171 0.6063 2.3682 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8898 25 1 2.0624 5.7076 -0.0554 26 1 4.3098 6.6379 0.0067 27 1 6.7812 6.3495 0.0768 28 1 5.9606 2.6784 0.0884 29 1 4.3946 -2.7828 0.9521 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396330938.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:22 Heat of formation + Delta-G solvation = -26.867874 kcal Electronic energy + Delta-G solvation = -16918.469365 eV Core-core repulsion = 14091.736157 eV Total energy + Delta-G solvation = -2826.733208 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.40733 -38.14816 -37.55222 -34.45984 -32.60961 -30.66433 -28.97623 -26.68485 -25.77633 -24.06872 -22.10060 -20.91346 -19.44541 -17.78048 -17.36695 -16.17401 -16.02051 -15.41088 -15.33357 -14.51356 -13.97653 -13.97004 -13.68929 -13.49336 -13.21996 -12.91310 -12.64848 -12.03950 -11.65540 -11.35589 -11.31736 -10.98059 -10.56675 -10.31747 -9.90777 -9.73293 -9.51109 -9.45290 -9.11849 -8.77017 -7.44678 -6.97135 -6.82354 -4.33222 0.96588 1.61819 2.24378 2.64506 2.81736 3.04485 3.28126 3.44414 3.50397 4.15069 4.27699 4.43688 4.61700 5.05176 5.12831 5.32077 5.59958 5.63427 5.66648 5.80117 5.86416 5.92918 6.12769 6.44619 6.63453 6.69098 6.77112 7.25835 7.34358 7.39361 7.72780 8.14169 8.28893 8.55592 8.86507 10.17382 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.020791 B = 0.008917 C = 0.006677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.439986 B = 3139.226460 C = 4192.487182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.266 6.266 3 C -0.176 4.176 4 S 0.008 5.992 5 C -0.105 4.105 6 C -0.107 4.107 7 C -0.078 4.078 8 C -0.219 4.219 9 C 0.385 3.615 10 O -0.470 6.470 11 C 0.000 4.000 12 C -0.056 4.056 13 C 0.054 3.946 14 C -0.426 4.426 15 H 0.092 0.908 16 C 0.099 3.901 17 N -0.805 5.805 18 Si 0.927 3.073 19 H -0.273 1.273 20 H -0.300 1.300 21 H -0.253 1.253 22 H 0.047 0.953 23 H 0.089 0.911 24 H 0.041 0.959 25 H 0.120 0.880 26 H 0.127 0.873 27 H 0.097 0.903 28 H 0.137 0.863 29 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.461 10.818 0.521 12.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.182 6.182 3 C -0.333 4.333 4 S 0.269 5.731 5 C -0.221 4.221 6 C -0.130 4.130 7 C -0.099 4.099 8 C -0.223 4.223 9 C 0.245 3.755 10 O -0.345 6.345 11 C -0.020 4.020 12 C -0.065 4.065 13 C 0.045 3.955 14 C -0.457 4.457 15 H 0.110 0.890 16 C -0.120 4.120 17 N -0.430 5.430 18 Si 0.757 3.243 19 H -0.200 1.200 20 H -0.229 1.229 21 H -0.177 1.177 22 H 0.065 0.935 23 H 0.108 0.892 24 H 0.059 0.941 25 H 0.138 0.862 26 H 0.145 0.855 27 H 0.113 0.887 28 H 0.155 0.845 29 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.341 10.238 0.487 12.053 hybrid contribution 0.337 -0.413 0.615 0.814 sum -6.005 9.825 1.102 11.567 Atomic orbital electron populations 1.22866 0.81102 1.02680 1.00344 1.85567 1.18002 1.23647 1.91024 1.22120 0.93097 0.84848 1.33228 1.83064 1.07799 0.99787 1.82422 1.22575 0.96665 0.96857 1.05978 1.20015 0.97303 0.91759 1.03957 1.20627 0.91370 0.98760 0.99100 1.20519 0.95798 0.94242 1.11787 1.23828 0.86866 0.94480 0.70302 1.90530 1.43336 1.64894 1.35710 1.21322 0.96307 0.93682 0.90659 1.19305 0.92283 0.93155 1.01801 1.16959 0.89338 0.90245 0.98930 1.18592 1.03264 0.95777 1.28077 0.89032 1.25966 0.95007 0.93624 0.97421 1.69892 1.38332 0.99698 1.35096 0.85674 0.79919 0.80739 0.78009 1.19979 1.22936 1.17674 0.93472 0.89237 0.94052 0.86242 0.85484 0.88684 0.84542 0.90741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.17 101.05 1.03 1.52 15 2 O -0.27 -6.31 5.94 -17.37 -0.10 -6.41 15 3 C -0.18 -4.23 5.29 30.44 0.16 -4.07 15 4 S 0.01 0.16 21.83 -107.50 -2.35 -2.18 15 5 C -0.10 -2.07 6.43 -38.32 -0.25 -2.32 15 6 C -0.11 -1.68 9.99 -39.63 -0.40 -2.07 15 7 C -0.08 -1.07 9.73 -39.55 -0.38 -1.46 15 8 C -0.22 -3.55 5.85 -105.25 -0.62 -4.16 15 9 C 0.39 5.43 11.44 34.20 0.39 5.82 15 10 O -0.47 -8.59 17.14 5.54 0.09 -8.49 15 11 C 0.00 0.01 9.37 -38.44 -0.36 -0.35 15 12 C -0.06 -1.26 5.99 -105.21 -0.63 -1.89 15 13 C 0.05 1.39 4.92 -105.92 -0.52 0.87 15 14 C -0.43 -11.79 9.38 -38.18 -0.36 -12.15 15 15 H 0.09 2.63 8.06 -52.49 -0.42 2.21 15 16 C 0.10 2.71 5.08 -17.30 -0.09 2.62 15 17 N -0.81 -22.34 13.95 55.54 0.77 -21.57 15 18 Si 0.93 22.64 24.17 -169.99 -4.11 18.53 15 19 H -0.27 -6.45 7.00 56.52 0.40 -6.06 15 20 H -0.30 -7.15 7.11 56.52 0.40 -6.75 15 21 H -0.25 -6.31 6.24 56.52 0.35 -5.96 15 22 H 0.05 0.77 7.99 -51.92 -0.41 0.35 15 23 H 0.09 1.40 8.14 -51.93 -0.42 0.98 15 24 H 0.04 0.70 8.04 -51.93 -0.42 0.28 15 25 H 0.12 1.53 8.06 -52.49 -0.42 1.11 15 26 H 0.13 1.20 8.06 -52.49 -0.42 0.77 15 27 H 0.10 0.87 8.06 -52.49 -0.42 0.44 15 28 H 0.14 2.92 7.58 -52.49 -0.40 2.52 15 29 H 0.28 7.15 8.30 -40.82 -0.34 6.81 15 LS Contribution 269.30 15.07 4.06 4.06 Total: -1.00 -30.81 269.30 -6.19 -36.99 By element: Atomic # 1 Polarization: -0.75 SS G_CDS: -2.53 Total: -3.29 kcal Atomic # 6 Polarization: -15.62 SS G_CDS: -2.02 Total: -17.64 kcal Atomic # 7 Polarization: -22.34 SS G_CDS: 0.77 Total: -21.57 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.01 Total: -14.91 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.11 Total: 18.53 kcal Atomic # 16 Polarization: 0.16 SS G_CDS: -2.35 Total: -2.18 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.81 -6.19 -36.99 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396330938.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.124 kcal (2) G-P(sol) polarization free energy of solvation -30.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds