Wall clock time and date at job start Mon Mar 30 2020 06:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35226 * 117.00339 * 2 1 4 4 S 1.75159 * 124.53000 * 358.47709 * 3 2 1 5 5 C 1.75928 * 92.80195 * 180.02562 * 4 3 2 6 6 C 1.40181 * 129.57371 * 179.97438 * 5 4 3 7 7 C 1.36074 * 120.85423 * 179.14787 * 6 5 4 8 8 C 1.40384 * 120.08077 * 0.80917 * 7 6 5 9 9 C 1.46826 * 120.07824 * 179.45668 * 8 7 6 10 10 O 1.21297 * 119.99685 * 180.02562 * 9 8 7 11 11 C 1.39236 * 119.84447 * 359.47035 * 8 7 6 12 12 C 1.39663 * 110.54862 * 359.71922 * 5 4 3 13 13 C 1.37433 * 124.53327 * 178.51945 * 3 2 1 14 14 C 1.40580 * 123.23670 * 359.95947 * 13 3 2 15 15 H 1.07993 * 120.00083 * 144.78951 * 14 13 3 16 16 C 1.39630 * 119.99994 * 324.79519 * 14 13 3 17 17 N 1.31205 * 120.00309 * 157.05269 * 16 14 13 18 18 Si 1.86800 * 120.00066 * 336.78193 * 16 14 13 19 19 H 1.48495 * 109.47404 * 116.19136 * 18 16 14 20 20 H 1.48497 * 109.47002 * 236.19568 * 18 16 14 21 21 H 1.48499 * 109.47105 * 356.19137 * 18 16 14 22 22 H 1.09009 * 109.46789 * 60.00510 * 1 2 3 23 23 H 1.08999 * 109.47567 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47605 * 300.00894 * 1 2 3 25 25 H 1.08001 * 119.56721 * 0.02562 * 6 5 4 26 26 H 1.08002 * 119.95853 * 180.26198 * 7 6 5 27 27 H 1.07997 * 119.99786 * 0.02562 * 9 8 7 28 28 H 1.07994 * 119.92338 * 180.02562 * 11 8 7 29 29 H 0.96997 * 120.00819 * 179.72720 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0430 1.2048 0.0000 4 16 1.2085 2.7444 -0.0384 5 6 2.7120 3.6577 -0.0145 6 6 2.9146 5.0447 -0.0273 7 6 4.1705 5.5669 0.0130 8 6 5.2858 4.7152 0.0511 9 6 6.6413 5.2786 0.0825 10 8 7.6039 4.5413 0.1150 11 6 5.1036 3.3348 0.0587 12 6 3.8092 2.7947 0.0280 13 6 3.4051 1.3851 0.0293 14 6 4.3227 0.3206 0.0637 15 1 5.2662 0.4040 -0.4549 16 6 4.0140 -0.8446 0.7684 17 7 4.6060 -1.9742 0.4600 18 14 2.7637 -0.7939 2.1553 19 1 1.5947 -1.6375 1.7992 20 1 3.3853 -1.3099 3.4013 21 1 2.3171 0.6063 2.3682 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8898 25 1 2.0624 5.7076 -0.0554 26 1 4.3098 6.6379 0.0067 27 1 6.7812 6.3495 0.0768 28 1 5.9606 2.6784 0.0884 29 1 4.3946 -2.7828 0.9521 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396330938.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:22 Heat of formation + Delta-G solvation = -47.883980 kcal Electronic energy + Delta-G solvation = -16919.380691 eV Core-core repulsion = 14091.736157 eV Total energy + Delta-G solvation = -2827.644535 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.78965 -39.76882 -39.05097 -36.18757 -34.42720 -32.05843 -30.56767 -28.33864 -27.38517 -25.51499 -23.65259 -22.34349 -21.03578 -19.40554 -19.22510 -17.62987 -17.43037 -17.05892 -16.76987 -16.32257 -15.52397 -15.31184 -15.13627 -14.99513 -14.97919 -14.36089 -14.22412 -13.73168 -13.32564 -12.96706 -12.87909 -12.60249 -12.37385 -11.89405 -11.74193 -11.37956 -11.11736 -11.01030 -10.71911 -10.34731 -8.98532 -8.83925 -8.67259 -6.33861 -0.36754 0.10407 0.66798 1.07085 1.14182 1.27469 1.42749 1.47335 1.76735 2.21846 2.77214 2.81204 3.12141 3.47149 3.88133 4.06909 4.25593 4.29938 4.39489 4.42960 4.52936 4.60161 4.77014 5.01822 5.17624 5.33531 5.34932 5.48043 5.52298 5.94234 6.18982 6.36664 6.61429 6.66716 6.88271 8.23869 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.020791 B = 0.008917 C = 0.006677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.439986 B = 3139.226460 C = 4192.487182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.299 6.299 3 C -0.168 4.168 4 S 0.061 5.939 5 C -0.121 4.121 6 C -0.100 4.100 7 C -0.045 4.045 8 C -0.210 4.210 9 C 0.396 3.604 10 O -0.519 6.519 11 C -0.037 4.037 12 C -0.095 4.095 13 C 0.019 3.981 14 C -0.466 4.466 15 H 0.048 0.952 16 C 0.062 3.938 17 N -0.856 5.856 18 Si 0.978 3.022 19 H -0.259 1.259 20 H -0.295 1.295 21 H -0.263 1.263 22 H 0.065 0.935 23 H 0.112 0.888 24 H 0.055 0.945 25 H 0.164 0.836 26 H 0.197 0.803 27 H 0.176 0.824 28 H 0.099 0.901 29 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.840 15.696 0.936 17.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.216 6.216 3 C -0.325 4.325 4 S 0.321 5.679 5 C -0.237 4.237 6 C -0.124 4.124 7 C -0.066 4.066 8 C -0.215 4.215 9 C 0.258 3.742 10 O -0.395 6.395 11 C -0.057 4.057 12 C -0.103 4.103 13 C 0.009 3.991 14 C -0.499 4.499 15 H 0.067 0.933 16 C -0.151 4.151 17 N -0.485 5.485 18 Si 0.805 3.195 19 H -0.185 1.185 20 H -0.224 1.224 21 H -0.187 1.187 22 H 0.083 0.917 23 H 0.131 0.869 24 H 0.073 0.927 25 H 0.181 0.819 26 H 0.214 0.786 27 H 0.191 0.809 28 H 0.118 0.882 29 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.728 15.130 0.896 17.490 hybrid contribution 1.026 -1.583 0.380 1.925 sum -7.703 13.547 1.276 15.635 Atomic orbital electron populations 1.23261 0.78177 1.04878 1.01839 1.85525 1.21164 1.24173 1.90732 1.22663 0.93876 0.87159 1.28810 1.82657 1.06551 0.96005 1.82673 1.22983 0.95561 0.98669 1.06481 1.20628 0.99816 0.89992 1.01923 1.21343 0.89146 1.01546 0.94532 1.21111 0.98786 0.92501 1.09059 1.24818 0.84662 0.97014 0.67658 1.90551 1.44590 1.66732 1.37644 1.21272 0.94694 0.95866 0.93905 1.19283 0.94144 0.92241 1.04678 1.17310 0.90115 0.91617 1.00046 1.18499 1.02911 0.97937 1.30522 0.93341 1.26591 0.96596 0.93160 0.98797 1.69933 1.41112 1.00335 1.37091 0.84950 0.78557 0.80036 0.75923 1.18455 1.22406 1.18738 0.91665 0.86925 0.92658 0.81870 0.78616 0.80857 0.88236 0.90224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.49 10.17 113.37 1.15 1.64 15 2 O -0.30 -14.23 5.94 -85.08 -0.51 -14.73 15 3 C -0.17 -8.16 5.29 67.63 0.36 -7.80 15 4 S 0.06 2.27 21.83 -56.49 -1.23 1.04 15 5 C -0.12 -4.52 6.43 23.09 0.15 -4.38 15 6 C -0.10 -2.58 9.99 22.24 0.22 -2.35 15 7 C -0.05 -0.94 9.73 22.29 0.22 -0.73 15 8 C -0.21 -6.19 5.85 -20.27 -0.12 -6.30 15 9 C 0.40 9.61 11.44 70.07 0.80 10.41 15 10 O -0.52 -18.59 17.14 -3.08 -0.05 -18.64 15 11 C -0.04 -1.57 9.37 23.01 0.22 -1.36 15 12 C -0.09 -4.38 5.99 -20.24 -0.12 -4.50 15 13 C 0.02 1.00 4.92 -20.71 -0.10 0.90 15 14 C -0.47 -28.37 9.38 23.18 0.22 -28.16 15 15 H 0.05 3.20 8.06 -2.91 -0.02 3.17 15 16 C 0.06 3.65 5.08 85.12 0.43 4.08 15 17 N -0.86 -51.42 13.95 21.79 0.30 -51.12 15 18 Si 0.98 48.66 24.17 68.60 1.66 50.32 15 19 H -0.26 -12.03 7.00 99.48 0.70 -11.33 15 20 H -0.30 -14.11 7.11 99.48 0.71 -13.40 15 21 H -0.26 -13.22 6.24 99.48 0.62 -12.60 15 22 H 0.06 1.97 7.99 -2.38 -0.02 1.95 15 23 H 0.11 3.28 8.14 -2.39 -0.02 3.26 15 24 H 0.05 1.73 8.04 -2.39 -0.02 1.71 15 25 H 0.16 2.87 8.06 -2.91 -0.02 2.84 15 26 H 0.20 1.59 8.06 -2.91 -0.02 1.56 15 27 H 0.18 1.73 8.06 -2.91 -0.02 1.71 15 28 H 0.10 4.80 7.58 -2.91 -0.02 4.78 15 29 H 0.29 15.65 8.30 -92.71 -0.77 14.88 15 Total: -1.00 -77.82 269.30 4.67 -73.15 By element: Atomic # 1 Polarization: -2.55 SS G_CDS: 1.08 Total: -1.47 kcal Atomic # 6 Polarization: -41.97 SS G_CDS: 3.42 Total: -38.54 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: 0.30 Total: -51.12 kcal Atomic # 8 Polarization: -32.81 SS G_CDS: -0.56 Total: -33.37 kcal Atomic # 14 Polarization: 48.66 SS G_CDS: 1.66 Total: 50.32 kcal Atomic # 16 Polarization: 2.27 SS G_CDS: -1.23 Total: 1.04 kcal Total: -77.82 4.67 -73.15 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396330938.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.265 kcal (2) G-P(sol) polarization free energy of solvation -77.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds