Wall clock time and date at job start Mon Mar 30 2020 06:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50698 * 109.47423 * 2 1 4 4 C 1.36945 * 122.48993 * 270.02958 * 3 2 1 5 5 C 1.39924 * 124.82720 * 359.97438 * 4 3 2 6 6 H 1.07995 * 119.99957 * 0.02562 * 5 4 3 7 7 C 1.40182 * 119.99800 * 180.02562 * 5 4 3 8 8 N 1.30761 * 120.00084 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99710 * 180.02562 * 7 5 4 10 10 H 1.48490 * 109.47174 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.46793 * 120.00003 * 9 7 5 12 12 H 1.48501 * 109.46987 * 239.99890 * 9 7 5 13 13 S 1.75459 * 110.34417 * 179.97438 * 4 3 2 14 14 C 1.75981 * 91.78910 * 359.97438 * 13 4 3 15 15 C 1.39643 * 130.26994 * 180.02562 * 14 13 4 16 16 C 1.37668 * 120.28267 * 180.02562 * 15 14 13 17 17 C 1.50697 * 119.88077 * 180.02562 * 16 15 14 18 18 O 1.42900 * 109.47013 * 269.95497 * 17 16 15 19 19 C 1.38979 * 120.23497 * 359.97438 * 16 15 14 20 20 C 1.35915 * 120.65177 * 0.02562 * 19 16 15 21 21 C 1.39803 * 122.48416 * 89.99935 * 3 2 1 22 22 H 1.09005 * 109.47066 * 299.99798 * 1 2 3 23 23 H 1.09000 * 109.47298 * 59.99835 * 1 2 3 24 24 H 1.08998 * 109.47271 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47066 * 240.00202 * 2 1 3 26 26 H 1.08996 * 109.47251 * 120.00676 * 2 1 3 27 27 H 0.97004 * 120.00020 * 179.97438 * 8 7 5 28 28 H 1.07996 * 119.86116 * 0.02562 * 15 14 13 29 29 H 1.09002 * 109.47417 * 29.95657 * 17 16 15 30 30 H 1.09006 * 109.47122 * 149.95810 * 17 16 15 31 31 H 0.96697 * 113.99883 * 180.02562 * 18 17 16 32 32 H 1.08000 * 119.66856 * 180.29695 * 19 16 15 33 33 H 1.08004 * 119.75689 * 180.02562 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2770 2.1145 -1.1551 5 6 2.0970 1.6058 -2.4461 6 1 1.7398 0.5960 -2.5837 7 6 2.3802 2.4071 -3.5609 8 7 2.8122 3.6300 -3.3944 9 14 2.1392 1.7282 -5.2845 10 1 1.6450 0.3304 -5.2013 11 1 1.1478 2.5619 -6.0107 12 1 3.4338 1.7526 -6.0116 13 16 2.8483 3.7319 -0.7859 14 6 2.7427 3.4336 0.9452 15 6 3.0372 4.2691 2.0247 16 6 2.8782 3.8177 3.3155 17 6 3.1981 4.7272 4.4737 18 8 4.5698 4.5666 4.8406 19 6 2.4226 2.5266 3.5542 20 6 2.1289 1.6934 2.5214 21 6 2.2826 2.1287 1.1793 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.0085 4.1843 -4.1658 28 1 3.3912 5.2737 1.8462 29 1 3.0184 5.7623 4.1833 30 1 2.5629 4.4723 5.3221 31 1 4.8464 5.1227 5.5817 32 1 2.2966 2.1835 4.5705 33 1 1.7755 0.6930 2.7235 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396331133.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:50 Heat of formation + Delta-G solvation = -49.201366 kcal Electronic energy + Delta-G solvation = -16919.724952 eV Core-core repulsion = 14227.856386 eV Total energy + Delta-G solvation = -2691.868567 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.55222 -36.60486 -35.26072 -33.71396 -31.03635 -30.03503 -29.17138 -26.65425 -23.98378 -23.13567 -21.13597 -20.76023 -18.49724 -17.45906 -17.07967 -15.89211 -15.64120 -14.70702 -14.37165 -13.92465 -13.57540 -13.15870 -12.93670 -12.66985 -12.36217 -12.29093 -12.12644 -11.63778 -11.45964 -11.23439 -11.06961 -10.85140 -10.55001 -10.33464 -10.15117 -9.79658 -9.74635 -9.51271 -9.25450 -8.99399 -8.35013 -7.35536 -7.19461 -6.32318 -4.65274 2.01562 2.48593 2.77069 2.83753 2.91102 3.29038 3.48446 3.57128 3.86166 4.52540 4.87984 5.17840 5.52260 5.55425 5.84464 5.90172 5.98400 6.07901 6.14602 6.43256 6.45364 6.62767 6.65555 6.70104 6.88404 6.93615 7.14453 7.16687 7.20018 7.35712 7.55087 7.60456 7.77623 7.91469 7.93960 8.10756 8.34839 8.44687 9.63015 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.027812 B = 0.006261 C = 0.005252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.533035 B = 4471.409153 C = 5330.033823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.021 4.021 3 C -0.330 4.330 4 C 0.062 3.938 5 C -0.377 4.377 6 H 0.102 0.898 7 C 0.052 3.948 8 N -0.774 5.774 9 Si 0.936 3.064 10 H -0.255 1.255 11 H -0.268 1.268 12 H -0.268 1.268 13 S 0.133 5.867 14 C -0.270 4.270 15 C -0.027 4.027 16 C -0.181 4.181 17 C 0.135 3.865 18 O -0.570 6.570 19 C -0.087 4.087 20 C -0.154 4.154 21 C 0.033 3.967 22 H 0.043 0.957 23 H 0.051 0.949 24 H 0.033 0.967 25 H 0.051 0.949 26 H 0.040 0.960 27 H 0.300 0.700 28 H 0.100 0.900 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.366 0.634 32 H 0.099 0.901 33 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.146 0.713 3.999 4.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.061 4.061 3 C -0.337 4.337 4 C -0.058 4.058 5 C -0.411 4.411 6 H 0.120 0.880 7 C -0.169 4.169 8 N -0.400 5.400 9 Si 0.759 3.241 10 H -0.178 1.178 11 H -0.192 1.192 12 H -0.192 1.192 13 S 0.395 5.605 14 C -0.385 4.385 15 C -0.049 4.049 16 C -0.183 4.183 17 C 0.058 3.942 18 O -0.375 6.375 19 C -0.108 4.108 20 C -0.174 4.174 21 C 0.025 3.975 22 H 0.063 0.937 23 H 0.071 0.929 24 H 0.052 0.948 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.114 0.886 28 H 0.118 0.882 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.211 0.789 32 H 0.117 0.883 33 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.669 1.717 2.474 3.085 hybrid contribution -0.505 -0.921 0.647 1.234 sum -1.174 0.797 3.121 3.428 Atomic orbital electron populations 1.21747 0.97642 0.98960 1.01441 1.19544 0.93663 0.93380 0.99468 1.18278 1.26611 0.98651 0.90127 1.21272 0.94372 0.94329 0.95805 1.19398 1.32830 1.00344 0.88489 0.88037 1.26337 0.92691 0.94281 1.03622 1.68661 1.29413 1.07285 1.34660 0.85749 0.79244 0.80442 0.78699 1.17814 1.19248 1.19243 1.84810 1.70690 1.14490 0.90533 1.23604 1.14172 0.98936 1.01760 1.20007 0.96966 0.97267 0.90653 1.18860 1.10785 0.96040 0.92621 1.20809 0.81837 0.96821 0.94774 1.86684 1.27868 1.68047 1.54892 1.20069 0.99992 0.93319 0.97416 1.20477 1.06484 0.98954 0.91511 1.17858 0.94702 0.91986 0.92928 0.93741 0.92939 0.94751 0.93041 0.94110 0.88641 0.88210 0.94040 0.94033 0.78860 0.88257 0.87976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.89 37.15 0.37 -2.29 16 2 C -0.02 -0.44 5.65 -27.89 -0.16 -0.60 16 3 C -0.33 -8.07 5.20 -104.51 -0.54 -8.61 16 4 C 0.06 1.57 6.11 -39.42 -0.24 1.33 16 5 C -0.38 -9.09 8.83 -38.22 -0.34 -9.42 16 6 H 0.10 2.33 6.67 -52.49 -0.35 1.98 16 7 C 0.05 1.17 5.50 -17.28 -0.10 1.08 16 8 N -0.77 -17.95 10.58 55.56 0.59 -17.36 16 9 Si 0.94 16.76 29.56 -169.99 -5.03 11.74 16 10 H -0.25 -4.50 7.11 56.52 0.40 -4.10 16 11 H -0.27 -4.72 7.11 56.52 0.40 -4.32 16 12 H -0.27 -4.73 7.11 56.52 0.40 -4.33 16 13 S 0.13 3.28 20.13 -107.50 -2.16 1.12 16 14 C -0.27 -6.63 6.48 -38.27 -0.25 -6.88 16 15 C -0.03 -0.59 9.71 -39.27 -0.38 -0.97 16 16 C -0.18 -3.68 5.51 -104.56 -0.58 -4.26 16 17 C 0.13 2.16 7.17 36.00 0.26 2.42 16 18 O -0.57 -9.12 13.64 -35.23 -0.48 -9.60 16 19 C -0.09 -1.78 9.60 -40.14 -0.39 -2.17 16 20 C -0.15 -3.40 9.63 -39.00 -0.38 -3.77 16 21 C 0.03 0.82 5.84 -107.11 -0.63 0.19 16 22 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 24 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 1.07 6.89 -51.93 -0.36 0.71 16 26 H 0.04 0.81 7.33 -51.93 -0.38 0.43 16 27 H 0.30 6.22 8.30 -40.82 -0.34 5.88 16 28 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 29 H 0.04 0.60 8.08 -51.93 -0.42 0.18 16 30 H 0.04 0.58 8.09 -51.93 -0.42 0.16 16 31 H 0.37 3.65 9.12 45.56 0.42 4.06 16 32 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 33 H 0.10 2.05 7.40 -52.48 -0.39 1.66 16 LS Contribution 292.76 15.07 4.41 4.41 Total: -1.00 -28.10 292.76 -9.16 -37.26 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -3.15 Total: 6.40 kcal Atomic # 6 Polarization: -30.62 SS G_CDS: -3.34 Total: -33.96 kcal Atomic # 7 Polarization: -17.95 SS G_CDS: 0.59 Total: -17.36 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: -0.48 Total: -9.60 kcal Atomic # 14 Polarization: 16.76 SS G_CDS: -5.03 Total: 11.74 kcal Atomic # 16 Polarization: 3.28 SS G_CDS: -2.16 Total: 1.12 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.10 -9.16 -37.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396331133.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.946 kcal (2) G-P(sol) polarization free energy of solvation -28.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds