Wall clock time and date at job start Mon Mar 30 2020 06:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35717 * 117.00613 * 2 1 4 4 C 1.37684 * 120.04190 * 359.97438 * 3 2 1 5 5 C 1.40654 * 120.51876 * 180.02562 * 4 3 2 6 6 C 1.46540 * 129.23360 * 179.97438 * 5 4 3 7 7 C 1.40846 * 123.27097 * 359.97396 * 6 5 4 8 8 H 1.08001 * 120.00089 * 339.17179 * 7 6 5 9 9 C 1.39723 * 119.99813 * 159.16982 * 7 6 5 10 10 N 1.31064 * 120.00169 * 344.92129 * 9 7 6 11 11 Si 1.86800 * 120.00050 * 164.92100 * 9 7 6 12 12 H 1.48506 * 109.47167 * 89.99724 * 11 9 7 13 13 H 1.48492 * 109.47332 * 209.99846 * 11 9 7 14 14 H 1.48498 * 109.47153 * 330.00314 * 11 9 7 15 15 C 1.36561 * 113.45151 * 179.97438 * 6 5 4 16 16 S 1.69959 * 112.00306 * 359.97438 * 15 6 5 17 17 C 1.39769 * 119.61412 * 359.97183 * 5 4 3 18 18 C 1.39155 * 119.89971 * 0.02562 * 17 5 4 19 19 C 1.39555 * 120.33493 * 359.74092 * 18 17 5 20 20 C 1.46600 * 120.13905 * 180.25987 * 19 18 17 21 21 O 1.21329 * 120.00059 * 0.27115 * 20 19 18 22 22 H 1.08991 * 109.47538 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46860 * 300.00455 * 1 2 3 24 24 H 1.09003 * 109.46642 * 59.99541 * 1 2 3 25 25 H 1.07997 * 119.73919 * 0.02562 * 4 3 2 26 26 H 0.97000 * 120.00537 * 180.02562 * 10 9 7 27 27 H 1.07995 * 123.99719 * 180.02562 * 15 6 5 28 28 H 1.07997 * 119.83129 * 179.97438 * 18 17 5 29 29 H 1.07999 * 120.00281 * 180.27138 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 1.2963 2.3645 -0.0005 5 6 1.9246 3.6230 -0.0011 6 6 1.3230 4.9592 -0.0022 7 6 -0.0680 5.1803 -0.0035 8 1 -0.7383 4.4016 -0.3362 9 6 -0.5807 6.4072 0.4258 10 7 0.1798 7.2359 1.0987 11 14 -2.3499 6.8663 0.0407 12 1 -3.2336 6.3951 1.1374 13 1 -2.4621 8.3415 -0.0861 14 1 -2.7607 6.2270 -1.2351 15 6 2.2423 5.9691 -0.0019 16 16 3.8362 5.3792 0.0004 17 6 3.3202 3.6982 -0.0005 18 6 4.0778 2.5309 0.0001 19 6 3.4512 1.2840 0.0055 20 6 4.2535 0.0570 0.0119 21 8 5.4649 0.1243 0.0174 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.2181 2.3040 -0.0005 26 1 -0.1762 8.0874 1.3971 27 1 1.9867 7.0183 -0.0022 28 1 5.1561 2.5903 0.0001 29 1 3.7663 -0.9068 0.0117 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396331255.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:02 Heat of formation + Delta-G solvation = -57.270310 kcal Electronic energy + Delta-G solvation = -16648.555724 eV Core-core repulsion = 13820.504168 eV Total energy + Delta-G solvation = -2828.051557 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.35051 -39.65479 -38.86363 -36.42059 -34.05097 -31.35362 -30.76848 -28.46789 -27.62760 -25.58106 -23.52508 -22.24121 -21.47828 -19.24475 -18.53221 -18.03987 -17.32106 -17.12982 -16.70254 -16.19916 -15.87662 -15.17361 -15.15430 -15.06011 -14.45853 -14.20308 -13.87176 -13.58895 -13.27979 -12.78634 -12.71941 -12.56949 -12.34208 -12.26678 -11.77854 -11.40883 -11.26251 -10.86670 -10.74582 -10.25534 -9.12810 -8.66992 -8.44489 -6.29132 -0.51023 0.32966 1.05657 1.12755 1.37443 1.40994 1.52287 1.87753 2.00283 2.21409 2.25651 2.70701 3.30727 3.39904 3.77594 3.94121 4.22289 4.38816 4.46616 4.51748 4.54512 4.79876 4.86633 4.94039 5.12378 5.20358 5.24667 5.49257 5.66352 5.90293 6.31807 6.44652 6.50268 6.77389 6.89005 8.36685 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.021918 B = 0.007009 C = 0.005380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.155818 B = 3993.810148 C = 5203.397834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.309 6.309 3 C 0.171 3.829 4 C -0.191 4.191 5 C -0.020 4.020 6 C 0.045 3.955 7 C -0.463 4.463 8 H 0.083 0.917 9 C 0.027 3.973 10 N -0.830 5.830 11 Si 0.985 3.015 12 H -0.261 1.261 13 H -0.273 1.273 14 H -0.256 1.256 15 C -0.371 4.371 16 S 0.060 5.940 17 C -0.205 4.205 18 C 0.005 3.995 19 C -0.227 4.227 20 C 0.410 3.590 21 O -0.506 6.506 22 H 0.136 0.864 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.143 0.857 26 H 0.284 0.716 27 H 0.139 0.861 28 H 0.142 0.858 29 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.364 -10.991 -1.750 11.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.222 6.222 3 C 0.121 3.879 4 C -0.212 4.212 5 C -0.030 4.030 6 C 0.035 3.965 7 C -0.496 4.496 8 H 0.101 0.899 9 C -0.187 4.187 10 N -0.457 5.457 11 Si 0.806 3.194 12 H -0.186 1.186 13 H -0.198 1.198 14 H -0.179 1.179 15 C -0.507 4.507 16 S 0.323 5.677 17 C -0.320 4.320 18 C -0.018 4.018 19 C -0.231 4.231 20 C 0.272 3.728 21 O -0.383 6.383 22 H 0.154 0.846 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.160 0.840 26 H 0.095 0.905 27 H 0.157 0.843 28 H 0.160 0.840 29 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.303 -10.114 -1.622 10.247 hybrid contribution -2.459 0.647 0.068 2.543 sum -2.762 -9.467 -1.554 9.983 Atomic orbital electron populations 1.23425 0.76182 1.06114 1.02122 1.85930 1.23497 1.24837 1.87973 1.18583 0.90717 0.84433 0.94180 1.20943 1.00713 0.89852 1.09642 1.19874 0.92164 0.94652 0.96337 1.17777 0.94993 0.87868 0.95837 1.19264 0.91199 1.00195 1.38941 0.89909 1.26721 1.04498 0.95467 0.92009 1.69947 1.39758 1.09218 1.26800 0.85145 0.76293 0.78031 0.79935 1.18551 1.19775 1.17927 1.24355 0.94335 1.02764 1.29291 1.81597 1.09315 0.94838 1.81960 1.22735 0.96993 0.98722 1.13542 1.20729 0.99647 0.88818 0.92599 1.20178 0.91544 0.96281 1.15067 1.24084 0.87557 0.93249 0.67886 1.90499 1.18758 1.90960 1.38055 0.84572 0.92413 0.92206 0.83972 0.90515 0.84339 0.84007 0.83390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.40 15 2 O -0.31 -7.66 9.67 -90.39 -0.87 -8.54 15 3 C 0.17 5.51 6.69 22.76 0.15 5.67 15 4 C -0.19 -7.31 8.84 22.73 0.20 -7.11 15 5 C -0.02 -0.91 6.03 -20.15 -0.12 -1.03 15 6 C 0.04 2.36 5.69 -20.87 -0.12 2.24 15 7 C -0.46 -24.07 9.04 23.27 0.21 -23.86 15 8 H 0.08 3.99 7.62 -2.91 -0.02 3.96 15 9 C 0.03 1.32 5.31 85.17 0.45 1.77 15 10 N -0.83 -43.75 10.89 21.80 0.24 -43.51 15 11 Si 0.99 37.36 29.59 68.60 2.03 39.39 15 12 H -0.26 -9.42 7.11 99.48 0.71 -8.71 15 13 H -0.27 -10.11 7.11 99.48 0.71 -9.40 15 14 H -0.26 -9.34 7.11 99.48 0.71 -8.64 15 15 C -0.37 -19.86 9.52 67.43 0.64 -19.22 15 16 S 0.06 2.74 22.96 -56.49 -1.30 1.45 15 17 C -0.21 -9.06 6.41 22.86 0.15 -8.91 15 18 C 0.01 0.19 9.61 22.81 0.22 0.41 15 19 C -0.23 -7.50 5.87 -20.15 -0.12 -7.61 15 20 C 0.41 11.29 11.18 70.00 0.78 12.07 15 21 O -0.51 -16.96 17.14 -3.18 -0.05 -17.01 15 22 H 0.14 1.48 8.14 -2.39 -0.02 1.46 15 23 H 0.06 1.10 7.65 -2.39 -0.02 1.09 15 24 H 0.06 1.11 7.65 -2.39 -0.02 1.09 15 25 H 0.14 4.98 5.96 -2.91 -0.02 4.96 15 26 H 0.28 13.65 8.30 -92.71 -0.77 12.88 15 27 H 0.14 7.94 6.31 -2.91 -0.02 7.92 15 28 H 0.14 5.00 7.62 -2.91 -0.02 4.98 15 29 H 0.15 2.83 7.62 -2.91 -0.02 2.81 15 Total: -1.00 -62.80 272.44 4.79 -58.00 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: 1.19 Total: 14.41 kcal Atomic # 6 Polarization: -47.75 SS G_CDS: 3.56 Total: -44.19 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: 0.24 Total: -43.51 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.93 Total: -25.55 kcal Atomic # 14 Polarization: 37.36 SS G_CDS: 2.03 Total: 39.39 kcal Atomic # 16 Polarization: 2.74 SS G_CDS: -1.30 Total: 1.45 kcal Total: -62.80 4.79 -58.00 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396331255.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.733 kcal (2) G-P(sol) polarization free energy of solvation -62.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds