Wall clock time and date at job start Mon Mar 30 2020 06:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35624 * 117.00249 * 2 1 4 4 C 1.38854 * 120.06594 * 0.02562 * 3 2 1 5 5 C 1.37556 * 120.37167 * 180.02562 * 4 3 2 6 6 C 1.40022 * 120.95081 * 359.95995 * 5 4 3 7 7 S 1.75846 * 130.00852 * 179.97438 * 6 5 4 8 8 C 1.69994 * 93.19315 * 180.02562 * 7 6 5 9 9 C 1.36689 * 111.82480 * 0.02562 * 8 7 6 10 10 C 1.40945 * 123.29203 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00356 * 219.86888 * 10 9 8 12 12 C 1.39718 * 120.00078 * 39.87653 * 10 9 8 13 13 N 1.31070 * 119.99890 * 7.39496 * 12 10 9 14 14 Si 1.86798 * 120.00099 * 187.39867 * 12 10 9 15 15 H 1.48501 * 109.47138 * 89.99687 * 14 12 10 16 16 H 1.48498 * 109.47237 * 209.99854 * 14 12 10 17 17 H 1.48503 * 109.47113 * 329.99533 * 14 12 10 18 18 C 1.39027 * 119.82000 * 0.02562 * 6 5 4 19 19 C 1.39906 * 120.06937 * 179.72251 * 3 2 1 20 20 C 1.46321 * 120.08276 * 0.02562 * 19 3 2 21 21 O 1.21361 * 120.00051 * 5.58211 * 20 19 3 22 22 H 1.08997 * 109.46890 * 300.00134 * 1 2 3 23 23 H 1.08998 * 109.46834 * 60.00003 * 1 2 3 24 24 H 1.08995 * 109.46897 * 179.97438 * 1 2 3 25 25 H 1.08000 * 119.81129 * 0.02562 * 4 3 2 26 26 H 1.08004 * 119.52201 * 179.97438 * 5 4 3 27 27 H 1.07994 * 124.08675 * 180.02562 * 8 7 6 28 28 H 0.97003 * 119.99695 * 180.02562 * 13 12 10 29 29 H 1.07999 * 119.99899 * 185.58693 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2084 0.0000 4 6 1.2899 2.3738 0.0005 5 6 1.9079 3.6027 0.0000 6 6 3.3043 3.7066 -0.0002 7 16 4.3317 5.1337 -0.0015 8 6 5.7645 4.2187 -0.0017 9 6 5.5098 2.8758 -0.0014 10 6 6.5232 1.8962 -0.0020 11 1 6.4122 1.0047 -0.6014 12 6 7.6714 2.0783 0.7729 13 7 7.7445 3.0846 1.6097 14 14 9.1024 0.8879 0.6165 15 1 10.0354 1.3706 -0.4331 16 1 9.8190 0.8020 1.9143 17 1 8.5904 -0.4554 0.2441 18 6 4.0832 2.5550 -0.0005 19 6 3.4418 1.2832 0.0059 20 6 4.2419 0.0582 0.0114 21 8 3.6984 -1.0220 -0.0912 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 0.2115 2.3150 0.0014 26 1 1.3074 4.5004 0.0000 27 1 6.7560 4.6468 -0.0020 28 1 8.5418 3.2112 2.1474 29 1 5.3162 0.1153 0.1070 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396331347.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:19 Heat of formation + Delta-G solvation = -47.504987 kcal Electronic energy + Delta-G solvation = -17021.053837 eV Core-core repulsion = 14193.425736 eV Total energy + Delta-G solvation = -2827.628101 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.38519 -39.30584 -38.87508 -36.34474 -33.92432 -32.10048 -29.89463 -28.52434 -27.75719 -25.25838 -23.81955 -22.21476 -21.38613 -19.25165 -18.24439 -18.11974 -17.26284 -16.88815 -16.70540 -16.40966 -15.65803 -15.17295 -15.05748 -14.99699 -14.28211 -14.09698 -13.92488 -13.44951 -13.19669 -12.86874 -12.65619 -12.55710 -12.31297 -12.19411 -11.85896 -11.39049 -11.26043 -10.90095 -10.36016 -10.08666 -9.02765 -8.56844 -8.29488 -6.30225 -0.42351 0.24187 1.07708 1.31829 1.42154 1.52793 1.56215 1.79241 1.88196 2.26740 2.34398 2.78301 3.23076 3.56965 3.83721 4.09851 4.26145 4.42065 4.43484 4.43973 4.64760 4.73478 4.85195 4.99661 5.21074 5.21884 5.30315 5.44608 5.70934 5.93538 6.42111 6.45500 6.65543 6.81194 6.95748 8.49789 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.019203 B = 0.008734 C = 0.006149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.731608 B = 3205.267165 C = 4552.128143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.315 6.315 3 C 0.172 3.828 4 C -0.211 4.211 5 C -0.004 4.004 6 C -0.213 4.213 7 S 0.094 5.906 8 C -0.328 4.328 9 C 0.055 3.945 10 C -0.488 4.488 11 H 0.085 0.915 12 C 0.037 3.963 13 N -0.846 5.846 14 Si 0.969 3.031 15 H -0.264 1.264 16 H -0.273 1.273 17 H -0.257 1.257 18 C -0.009 4.009 19 C -0.225 4.225 20 C 0.371 3.629 21 O -0.498 6.498 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.114 0.886 25 H 0.178 0.822 26 H 0.166 0.834 27 H 0.128 0.872 28 H 0.282 0.718 29 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.257 0.503 -1.903 11.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.227 6.227 3 C 0.122 3.878 4 C -0.232 4.232 5 C -0.026 4.026 6 C -0.328 4.328 7 S 0.357 5.643 8 C -0.464 4.464 9 C 0.045 3.955 10 C -0.522 4.522 11 H 0.102 0.898 12 C -0.175 4.175 13 N -0.474 5.474 14 Si 0.791 3.209 15 H -0.189 1.189 16 H -0.198 1.198 17 H -0.181 1.181 18 C -0.021 4.021 19 C -0.229 4.229 20 C 0.234 3.766 21 O -0.376 6.376 22 H 0.091 0.909 23 H 0.092 0.908 24 H 0.133 0.867 25 H 0.195 0.805 26 H 0.183 0.817 27 H 0.145 0.855 28 H 0.092 0.908 29 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.506 1.422 -1.786 11.730 hybrid contribution 1.419 -1.576 0.233 2.133 sum -10.087 -0.154 -1.552 10.207 Atomic orbital electron populations 1.23487 0.76268 1.05656 1.02911 1.86252 1.23572 1.25973 1.86917 1.19215 0.90746 0.85725 0.92080 1.21330 1.01502 0.90181 1.10163 1.20886 0.90360 0.98929 0.92430 1.22857 0.98384 0.97586 1.13949 1.81473 0.95003 1.06819 1.80976 1.24377 1.00439 0.97083 1.24465 1.17592 0.89270 0.93098 0.95537 1.19193 1.01826 1.05148 1.26061 0.89774 1.26455 1.00863 0.97305 0.92867 1.69924 1.28871 1.29314 1.19317 0.85370 0.77855 0.79167 0.78469 1.18917 1.19837 1.18108 1.19731 0.94216 0.91556 0.96566 1.20005 0.91887 0.94774 1.16185 1.24686 0.96571 0.86148 0.69157 1.90415 1.77514 1.31799 1.37890 0.90887 0.90759 0.86734 0.80504 0.81694 0.85451 0.90843 0.85896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.81 113.37 1.11 1.33 15 2 O -0.31 -10.87 8.53 -68.25 -0.58 -11.46 15 3 C 0.17 6.34 6.69 22.82 0.15 6.49 15 4 C -0.21 -6.03 9.00 22.26 0.20 -5.83 15 5 C 0.00 -0.12 10.04 22.54 0.23 0.11 15 6 C -0.21 -8.57 6.43 22.89 0.15 -8.42 15 7 S 0.09 3.79 22.97 -56.49 -1.30 2.50 15 8 C -0.33 -16.43 9.47 67.46 0.64 -15.79 15 9 C 0.05 2.84 5.46 -20.90 -0.11 2.73 15 10 C -0.49 -25.36 7.38 23.29 0.17 -25.19 15 11 H 0.08 4.19 5.82 -2.91 -0.02 4.17 15 12 C 0.04 1.88 5.37 85.16 0.46 2.34 15 13 N -0.85 -44.68 11.77 21.80 0.26 -44.42 15 14 Si 0.97 38.93 29.57 68.60 2.03 40.96 15 15 H -0.26 -10.32 7.11 99.48 0.71 -9.61 15 16 H -0.27 -10.67 7.11 99.48 0.71 -9.96 15 17 H -0.26 -10.07 7.11 99.48 0.71 -9.37 15 18 C -0.01 -0.44 6.02 -19.97 -0.12 -0.56 15 19 C -0.22 -9.95 5.92 -19.73 -0.12 -10.07 15 20 C 0.37 17.02 10.84 69.92 0.76 17.78 15 21 O -0.50 -23.77 15.96 17.82 0.28 -23.48 15 22 H 0.07 1.19 7.65 -2.39 -0.02 1.17 15 23 H 0.07 1.19 7.66 -2.39 -0.02 1.18 15 24 H 0.11 1.89 8.14 -2.39 -0.02 1.87 15 25 H 0.18 3.30 6.28 -2.91 -0.02 3.28 15 26 H 0.17 3.60 8.06 -2.91 -0.02 3.57 15 27 H 0.13 6.82 7.41 -2.91 -0.02 6.80 15 28 H 0.28 13.72 8.30 -92.71 -0.77 12.95 15 29 H 0.13 5.75 4.38 -2.91 -0.01 5.74 15 Total: -1.00 -64.60 266.25 5.41 -59.19 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: 1.20 Total: 11.80 kcal Atomic # 6 Polarization: -38.60 SS G_CDS: 3.51 Total: -35.09 kcal Atomic # 7 Polarization: -44.68 SS G_CDS: 0.26 Total: -44.42 kcal Atomic # 8 Polarization: -34.64 SS G_CDS: -0.30 Total: -34.94 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 2.03 Total: 40.96 kcal Atomic # 16 Polarization: 3.79 SS G_CDS: -1.30 Total: 2.50 kcal Total: -64.60 5.41 -59.19 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396331347.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.686 kcal (2) G-P(sol) polarization free energy of solvation -64.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds