Wall clock time and date at job start Mon Mar 30 2020 06:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35842 * 117.00597 * 2 1 4 4 C 1.39261 * 119.98226 * 0.02562 * 3 2 1 5 5 C 1.37163 * 120.21182 * 180.02562 * 4 3 2 6 6 C 1.40967 * 120.54670 * 0.24322 * 5 4 3 7 7 C 1.39454 * 119.14719 * 359.54327 * 6 5 4 8 8 C 1.37993 * 119.99327 * 180.02562 * 3 2 1 9 9 S 1.75864 * 110.83386 * 180.26215 * 7 6 5 10 10 C 1.75167 * 92.84771 * 359.73541 * 9 7 6 11 11 C 1.41017 * 124.64644 * 179.97438 * 10 9 7 12 12 O 1.21520 * 119.99983 * 185.73186 * 11 10 9 13 13 C 1.38956 * 110.70701 * 0.37635 * 10 9 7 14 14 C 1.39546 * 123.36073 * 179.60891 * 13 10 9 15 15 H 1.08008 * 119.99736 * 40.43612 * 14 13 10 16 16 C 1.40683 * 120.00220 * 220.43652 * 14 13 10 17 17 N 1.30439 * 120.00154 * 18.17019 * 16 14 13 18 18 Si 1.86804 * 120.00077 * 198.17288 * 16 14 13 19 19 H 1.48499 * 109.47025 * 59.99569 * 18 16 14 20 20 H 1.48495 * 109.47103 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.46885 * 299.99977 * 18 16 14 22 22 H 1.09003 * 109.46490 * 299.99893 * 1 2 3 23 23 H 1.08990 * 109.46857 * 59.99281 * 1 2 3 24 24 H 1.08991 * 109.47225 * 179.97438 * 1 2 3 25 25 H 1.07995 * 119.90011 * 359.96871 * 4 3 2 26 26 H 1.07996 * 119.72843 * 179.97438 * 5 4 3 27 27 H 1.08001 * 119.77916 * 359.97438 * 8 3 2 28 28 H 1.07997 * 120.00165 * 5.74679 * 11 10 9 29 29 H 0.97000 * 120.00153 * 174.93425 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2103 0.0000 4 6 1.2872 2.3781 0.0005 5 6 1.9051 3.6026 0.0000 6 6 3.3117 3.6953 -0.0062 7 6 4.0696 2.5247 -0.0022 8 6 3.4239 1.2822 -0.0005 9 16 5.7892 2.8929 -0.0038 10 6 5.5080 4.6218 -0.0181 11 6 6.5244 5.5993 -0.0247 12 8 6.2363 6.7760 0.0706 13 6 4.1462 4.8982 -0.0128 14 6 3.6260 6.1930 -0.0138 15 1 4.0827 6.9580 -0.6244 16 6 2.5068 6.5020 0.7806 17 7 2.1700 5.7173 1.7665 18 14 1.5027 8.0362 0.4232 19 1 0.9545 7.9592 -0.9547 20 1 0.3846 8.1336 1.3956 21 1 2.3707 9.2351 0.5444 22 1 -0.3632 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8898 24 1 -0.3633 -1.0276 -0.0005 25 1 0.2088 2.3195 0.0004 26 1 1.3091 4.5033 0.0000 27 1 4.0084 0.3741 -0.0005 28 1 7.5588 5.3022 -0.1147 29 1 1.4442 5.9674 2.3594 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396332311.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:25 Heat of formation + Delta-G solvation = -41.465207 kcal Electronic energy + Delta-G solvation = -16913.856754 eV Core-core repulsion = 14086.490558 eV Total energy + Delta-G solvation = -2827.366196 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.57443 -37.83609 -36.81494 -34.45517 -32.46416 -30.35984 -28.61609 -27.09380 -26.69786 -23.38171 -22.02995 -20.82375 -18.98264 -17.89886 -17.07887 -15.91303 -15.65921 -15.44287 -15.30882 -14.75696 -13.83835 -13.65244 -13.08137 -13.06665 -12.86690 -12.45361 -12.26520 -12.10435 -11.78348 -11.49192 -11.33172 -11.12885 -10.80516 -10.66391 -10.15416 -9.68401 -9.53194 -9.26203 -8.54357 -8.11781 -7.34221 -7.22092 -6.67301 -4.75061 1.57174 1.95621 2.66582 2.71129 2.87767 2.91515 3.12148 3.51734 3.68462 3.71266 4.16789 4.35017 4.99595 5.17971 5.29143 5.43673 5.48798 5.58622 5.78901 5.96209 6.16000 6.20748 6.53037 6.69141 6.85926 6.95555 7.08247 7.20290 7.36764 7.67458 7.85812 8.09055 8.28594 8.42841 9.22635 9.66414 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.017113 B = 0.009341 C = 0.006230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.830137 B = 2996.772615 C = 4493.231364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.322 6.322 3 C 0.131 3.869 4 C -0.232 4.232 5 C 0.002 3.998 6 C -0.085 4.085 7 C -0.068 4.068 8 C -0.148 4.148 9 S 0.007 5.993 10 C -0.456 4.456 11 C 0.391 3.609 12 O -0.521 6.521 13 C 0.170 3.830 14 C -0.367 4.367 15 H 0.110 0.890 16 C 0.071 3.929 17 N -0.750 5.750 18 Si 0.916 3.084 19 H -0.256 1.256 20 H -0.273 1.273 21 H -0.255 1.255 22 H 0.052 0.948 23 H 0.052 0.948 24 H 0.093 0.907 25 H 0.120 0.880 26 H 0.124 0.876 27 H 0.122 0.878 28 H 0.047 0.953 29 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.025 -6.375 -1.851 8.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.236 6.236 3 C 0.084 3.916 4 C -0.253 4.253 5 C -0.018 4.018 6 C -0.094 4.094 7 C -0.184 4.184 8 C -0.173 4.173 9 S 0.266 5.734 10 C -0.571 4.571 11 C 0.263 3.737 12 O -0.408 6.408 13 C 0.160 3.840 14 C -0.396 4.396 15 H 0.127 0.873 16 C -0.154 4.154 17 N -0.373 5.373 18 Si 0.738 3.262 19 H -0.180 1.180 20 H -0.197 1.197 21 H -0.179 1.179 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.111 0.889 25 H 0.138 0.862 26 H 0.142 0.858 27 H 0.140 0.860 28 H 0.063 0.937 29 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.890 -6.825 -1.632 8.553 hybrid contribution -1.922 1.307 0.115 2.327 sum -6.812 -5.518 -1.517 8.897 Atomic orbital electron populations 1.22943 0.79144 1.03057 1.01260 1.85977 1.20767 1.27500 1.89392 1.18547 0.91649 0.83611 0.97775 1.20887 0.99132 0.92310 1.13011 1.20836 0.93098 0.96328 0.91494 1.19516 0.93335 0.92481 1.04042 1.22309 0.97995 0.95465 1.02634 1.19399 0.90953 0.95849 1.11086 1.82827 1.01084 1.04287 1.85190 1.22644 0.97709 0.93924 1.42848 1.20457 0.90968 0.87554 0.74749 1.90457 1.86331 1.20333 1.43650 1.17596 0.88886 0.91710 0.85765 1.19668 1.05700 0.95989 1.18206 0.87271 1.26369 0.95605 0.99236 0.94216 1.69650 1.23188 1.35372 1.09093 0.86187 0.78921 0.81137 0.79915 1.17999 1.19735 1.17876 0.92896 0.92957 0.88884 0.86218 0.85835 0.86021 0.93705 0.89398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.81 101.05 0.99 1.35 15 2 O -0.32 -5.22 10.49 -19.25 -0.20 -5.43 15 3 C 0.13 2.45 6.67 -39.29 -0.26 2.19 15 4 C -0.23 -4.31 9.00 -39.59 -0.36 -4.66 15 5 C 0.00 0.05 8.43 -38.94 -0.33 -0.28 15 6 C -0.09 -2.05 5.54 -105.13 -0.58 -2.64 15 7 C -0.07 -1.55 6.41 -38.46 -0.25 -1.79 15 8 C -0.15 -2.97 10.00 -39.00 -0.39 -3.36 15 9 S 0.01 0.16 23.11 -107.50 -2.48 -2.32 15 10 C -0.46 -11.53 6.24 -38.26 -0.24 -11.76 15 11 C 0.39 9.66 11.41 31.78 0.36 10.02 15 12 O -0.52 -14.34 15.34 5.35 0.08 -14.26 15 13 C 0.17 4.44 5.38 -105.86 -0.57 3.87 15 14 C -0.37 -9.48 7.70 -38.17 -0.29 -9.78 15 15 H 0.11 2.91 6.86 -52.48 -0.36 2.55 15 16 C 0.07 1.64 4.09 -17.22 -0.07 1.57 15 17 N -0.75 -17.62 10.89 55.59 0.61 -17.02 15 18 Si 0.92 17.33 29.61 -169.99 -5.03 12.30 15 19 H -0.26 -4.71 7.11 56.52 0.40 -4.30 15 20 H -0.27 -4.88 7.11 56.52 0.40 -4.48 15 21 H -0.25 -4.98 7.11 56.52 0.40 -4.58 15 22 H 0.05 0.58 7.66 -51.93 -0.40 0.18 15 23 H 0.05 0.55 7.66 -51.93 -0.40 0.15 15 24 H 0.09 0.80 8.14 -51.93 -0.42 0.38 15 25 H 0.12 1.83 6.29 -52.49 -0.33 1.50 15 26 H 0.12 2.63 6.10 -52.49 -0.32 2.31 15 27 H 0.12 2.20 8.06 -52.49 -0.42 1.78 15 28 H 0.05 0.98 8.06 -52.49 -0.42 0.56 15 29 H 0.29 6.18 8.29 -40.82 -0.34 5.84 15 LS Contribution 268.56 15.07 4.05 4.05 Total: -1.00 -28.89 268.56 -7.18 -36.07 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -2.21 Total: 1.89 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: -1.99 Total: -15.27 kcal Atomic # 7 Polarization: -17.62 SS G_CDS: 0.61 Total: -17.02 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.12 Total: -19.69 kcal Atomic # 14 Polarization: 17.33 SS G_CDS: -5.03 Total: 12.30 kcal Atomic # 16 Polarization: 0.16 SS G_CDS: -2.48 Total: -2.32 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -28.89 -7.18 -36.07 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396332311.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.398 kcal (2) G-P(sol) polarization free energy of solvation -28.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds