Wall clock time and date at job start Mon Mar 30 2020 06:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35842 * 117.00597 * 2 1 4 4 C 1.39261 * 119.98226 * 0.02562 * 3 2 1 5 5 C 1.37163 * 120.21182 * 180.02562 * 4 3 2 6 6 C 1.40967 * 120.54670 * 0.24322 * 5 4 3 7 7 C 1.39454 * 119.14719 * 359.54327 * 6 5 4 8 8 C 1.37993 * 119.99327 * 180.02562 * 3 2 1 9 9 S 1.75864 * 110.83386 * 180.26215 * 7 6 5 10 10 C 1.75167 * 92.84771 * 359.73541 * 9 7 6 11 11 C 1.41017 * 124.64644 * 179.97438 * 10 9 7 12 12 O 1.21520 * 119.99983 * 185.73186 * 11 10 9 13 13 C 1.38956 * 110.70701 * 0.37635 * 10 9 7 14 14 C 1.39546 * 123.36073 * 179.60891 * 13 10 9 15 15 H 1.08008 * 119.99736 * 40.43612 * 14 13 10 16 16 C 1.40683 * 120.00220 * 220.43652 * 14 13 10 17 17 N 1.30439 * 120.00154 * 18.17019 * 16 14 13 18 18 Si 1.86804 * 120.00077 * 198.17288 * 16 14 13 19 19 H 1.48499 * 109.47025 * 59.99569 * 18 16 14 20 20 H 1.48495 * 109.47103 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.46885 * 299.99977 * 18 16 14 22 22 H 1.09003 * 109.46490 * 299.99893 * 1 2 3 23 23 H 1.08990 * 109.46857 * 59.99281 * 1 2 3 24 24 H 1.08991 * 109.47225 * 179.97438 * 1 2 3 25 25 H 1.07995 * 119.90011 * 359.96871 * 4 3 2 26 26 H 1.07996 * 119.72843 * 179.97438 * 5 4 3 27 27 H 1.08001 * 119.77916 * 359.97438 * 8 3 2 28 28 H 1.07997 * 120.00165 * 5.74679 * 11 10 9 29 29 H 0.97000 * 120.00153 * 174.93425 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2103 0.0000 4 6 1.2872 2.3781 0.0005 5 6 1.9051 3.6026 0.0000 6 6 3.3117 3.6953 -0.0062 7 6 4.0696 2.5247 -0.0022 8 6 3.4239 1.2822 -0.0005 9 16 5.7892 2.8929 -0.0038 10 6 5.5080 4.6218 -0.0181 11 6 6.5244 5.5993 -0.0247 12 8 6.2363 6.7760 0.0706 13 6 4.1462 4.8982 -0.0128 14 6 3.6260 6.1930 -0.0138 15 1 4.0827 6.9580 -0.6244 16 6 2.5068 6.5020 0.7806 17 7 2.1700 5.7173 1.7665 18 14 1.5027 8.0362 0.4232 19 1 0.9545 7.9592 -0.9547 20 1 0.3846 8.1336 1.3956 21 1 2.3707 9.2351 0.5444 22 1 -0.3632 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8898 24 1 -0.3633 -1.0276 -0.0005 25 1 0.2088 2.3195 0.0004 26 1 1.3091 4.5033 0.0000 27 1 4.0084 0.3741 -0.0005 28 1 7.5588 5.3022 -0.1147 29 1 1.4442 5.9674 2.3594 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396332311.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:24 Heat of formation + Delta-G solvation = -58.348773 kcal Electronic energy + Delta-G solvation = -16914.588881 eV Core-core repulsion = 14086.490558 eV Total energy + Delta-G solvation = -2828.098322 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.02557 -39.57693 -38.53159 -36.19216 -34.21582 -31.91610 -30.18443 -28.90834 -27.91497 -25.11600 -23.61198 -22.48672 -20.76632 -19.41712 -18.80817 -17.64145 -17.24420 -16.82082 -16.59299 -16.39593 -15.59572 -15.22033 -14.91526 -14.69865 -14.37341 -14.12140 -13.94528 -13.62010 -13.47194 -13.04445 -12.69562 -12.56758 -12.28185 -12.19157 -11.78475 -11.32418 -11.25081 -10.90421 -10.27905 -10.02119 -9.06921 -8.91219 -8.39589 -6.63841 -0.15605 0.35809 1.00703 1.07399 1.31565 1.43801 1.51099 1.72923 2.11423 2.30898 2.45390 2.67096 3.17282 3.84068 3.95633 4.14925 4.31344 4.42350 4.45478 4.55490 4.61473 4.76481 4.91894 4.98021 5.20475 5.32545 5.44503 5.49951 5.69759 5.82685 6.19012 6.38371 6.49459 6.56914 7.31446 7.93715 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.017113 B = 0.009341 C = 0.006230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.830137 B = 2996.772615 C = 4493.231364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.327 6.327 3 C 0.146 3.854 4 C -0.220 4.220 5 C -0.010 4.010 6 C -0.121 4.121 7 C -0.086 4.086 8 C -0.158 4.158 9 S 0.037 5.963 10 C -0.493 4.493 11 C 0.383 3.617 12 O -0.562 6.562 13 C 0.144 3.856 14 C -0.394 4.394 15 H 0.087 0.913 16 C 0.042 3.958 17 N -0.767 5.767 18 Si 0.983 3.017 19 H -0.247 1.247 20 H -0.248 1.248 21 H -0.269 1.269 22 H 0.061 0.939 23 H 0.065 0.935 24 H 0.126 0.874 25 H 0.158 0.842 26 H 0.121 0.879 27 H 0.140 0.860 28 H 0.083 0.917 29 H 0.308 0.692 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.502 -7.879 -1.697 11.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.241 6.241 3 C 0.098 3.902 4 C -0.241 4.241 5 C -0.029 4.029 6 C -0.129 4.129 7 C -0.201 4.201 8 C -0.183 4.183 9 S 0.295 5.705 10 C -0.608 4.608 11 C 0.258 3.742 12 O -0.451 6.451 13 C 0.135 3.865 14 C -0.423 4.423 15 H 0.104 0.896 16 C -0.182 4.182 17 N -0.389 5.389 18 Si 0.801 3.199 19 H -0.170 1.170 20 H -0.171 1.171 21 H -0.193 1.193 22 H 0.080 0.920 23 H 0.083 0.917 24 H 0.144 0.856 25 H 0.175 0.825 26 H 0.138 0.862 27 H 0.157 0.843 28 H 0.099 0.901 29 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.374 -8.379 -1.474 11.259 hybrid contribution -1.276 1.589 0.094 2.040 sum -8.651 -6.790 -1.380 11.083 Atomic orbital electron populations 1.23381 0.76274 1.05731 1.02280 1.85999 1.23606 1.25847 1.88617 1.18601 0.91384 0.84688 0.95497 1.21217 1.01005 0.91034 1.10857 1.20914 0.92195 0.97554 0.92275 1.19599 0.94594 0.92087 1.06606 1.22552 0.98165 0.96150 1.03240 1.19635 0.92092 0.95473 1.11077 1.82402 1.01084 1.01464 1.85555 1.23022 0.98050 0.96279 1.43494 1.20968 0.92480 0.86932 0.73815 1.90422 1.87085 1.21776 1.45837 1.18057 0.89862 0.92859 0.85711 1.19740 1.07566 0.95728 1.19218 0.89556 1.27065 0.95588 1.02260 0.93274 1.69639 1.23468 1.36687 1.09147 0.85244 0.77593 0.76379 0.80710 1.17021 1.17081 1.19324 0.92006 0.91675 0.85628 0.82485 0.86153 0.84257 0.90092 0.88037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.43 15 2 O -0.33 -9.35 10.49 -91.78 -0.96 -10.31 15 3 C 0.15 5.07 6.67 22.46 0.15 5.22 15 4 C -0.22 -7.58 9.00 22.26 0.20 -7.38 15 5 C -0.01 -0.41 8.43 22.69 0.19 -0.22 15 6 C -0.12 -5.89 5.54 -20.19 -0.11 -6.00 15 7 C -0.09 -3.86 6.41 23.00 0.15 -3.71 15 8 C -0.16 -6.08 10.00 22.64 0.23 -5.86 15 9 S 0.04 1.64 23.11 -56.49 -1.31 0.33 15 10 C -0.49 -25.81 6.24 23.12 0.14 -25.67 15 11 C 0.38 19.62 11.41 68.50 0.78 20.41 15 12 O -0.56 -32.38 15.34 -3.78 -0.06 -32.44 15 13 C 0.14 7.82 5.38 -20.67 -0.11 7.71 15 14 C -0.39 -21.22 7.70 23.18 0.18 -21.04 15 15 H 0.09 4.90 6.86 -2.91 -0.02 4.88 15 16 C 0.04 1.95 4.09 85.50 0.35 2.30 15 17 N -0.77 -35.91 10.89 21.95 0.24 -35.67 15 18 Si 0.98 35.28 29.61 68.60 2.03 37.31 15 19 H -0.25 -8.43 7.11 99.48 0.71 -7.72 15 20 H -0.25 -7.84 7.11 99.48 0.71 -7.13 15 21 H -0.27 -10.19 7.11 99.48 0.71 -9.48 15 22 H 0.06 1.06 7.66 -2.39 -0.02 1.04 15 23 H 0.06 1.06 7.66 -2.39 -0.02 1.04 15 24 H 0.13 1.52 8.14 -2.39 -0.02 1.50 15 25 H 0.16 4.13 6.29 -2.91 -0.02 4.11 15 26 H 0.12 5.06 6.10 -2.91 -0.02 5.04 15 27 H 0.14 4.76 8.06 -2.91 -0.02 4.74 15 28 H 0.08 3.52 8.06 -2.91 -0.02 3.50 15 29 H 0.31 12.57 8.29 -92.71 -0.77 11.80 15 Total: -1.00 -64.65 268.56 4.39 -60.26 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: 1.19 Total: 13.33 kcal Atomic # 6 Polarization: -36.06 SS G_CDS: 3.26 Total: -32.81 kcal Atomic # 7 Polarization: -35.91 SS G_CDS: 0.24 Total: -35.67 kcal Atomic # 8 Polarization: -41.73 SS G_CDS: -1.02 Total: -42.75 kcal Atomic # 14 Polarization: 35.28 SS G_CDS: 2.03 Total: 37.31 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -1.31 Total: 0.33 kcal Total: -64.65 4.39 -60.26 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396332311.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.908 kcal (2) G-P(sol) polarization free energy of solvation -64.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds