Wall clock time and date at job start Mon Mar 30 2020 06:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35845 * 117.00094 * 2 1 4 4 C 1.37548 * 119.77575 * 359.97386 * 3 2 1 5 5 C 1.40244 * 120.00444 * 180.02562 * 4 3 2 6 6 C 1.46939 * 120.06805 * 180.02562 * 5 4 3 7 7 O 1.21294 * 120.00188 * 179.97438 * 6 5 4 8 8 C 1.39410 * 119.86723 * 359.97438 * 5 4 3 9 9 C 1.39377 * 120.36315 * 0.02562 * 8 5 4 10 10 S 1.75837 * 130.00468 * 180.30636 * 9 8 5 11 11 C 1.69967 * 93.22135 * 180.02562 * 10 9 8 12 12 C 1.36634 * 111.95360 * 359.65034 * 11 10 9 13 13 C 1.40860 * 123.27987 * 180.24364 * 12 11 10 14 14 H 1.08004 * 120.00138 * 156.28173 * 13 12 11 15 15 C 1.39697 * 119.99893 * 336.28248 * 13 12 11 16 16 N 1.31081 * 119.99749 * 161.36149 * 15 13 12 17 17 Si 1.86791 * 120.00136 * 341.36265 * 15 13 12 18 18 H 1.48499 * 109.47631 * 94.05420 * 17 15 13 19 19 H 1.48507 * 109.47265 * 214.05493 * 17 15 13 20 20 H 1.48496 * 109.47307 * 334.04840 * 17 15 13 21 21 C 1.39585 * 119.82443 * 359.97438 * 9 8 5 22 22 H 1.09004 * 109.47270 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47502 * 300.00410 * 1 2 3 24 24 H 1.09002 * 109.47079 * 60.00459 * 1 2 3 25 25 H 1.07996 * 119.99893 * 359.97438 * 4 3 2 26 26 H 1.08005 * 119.99664 * 359.96885 * 6 5 4 27 27 H 1.07999 * 119.82027 * 179.97438 * 8 5 4 28 28 H 1.07998 * 124.02427 * 179.90887 * 11 10 9 29 29 H 0.96998 * 119.99569 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2104 0.0000 4 6 1.2921 2.3610 -0.0005 5 6 1.9238 3.6131 -0.0011 6 6 1.1201 4.8432 -0.0011 7 8 1.6677 5.9255 -0.0011 8 6 3.3159 3.6884 -0.0005 9 6 4.0843 2.5256 0.0000 10 16 5.8312 2.3251 0.0080 11 6 5.7326 0.6283 0.0021 12 6 4.4379 0.1918 0.0021 13 6 4.0816 -1.1710 0.0027 14 1 3.1165 -1.4767 0.3789 15 6 4.9767 -2.1271 -0.4833 16 7 4.8256 -3.3890 -0.1625 17 14 6.3887 -1.6073 -1.5902 18 1 7.6031 -1.3755 -0.7677 19 1 6.6600 -2.6784 -2.5825 20 1 6.0255 -0.3550 -2.3008 21 6 3.4568 1.2788 0.0006 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 0.2139 2.3003 -0.0014 26 1 0.0417 4.7836 -0.0012 27 1 3.8016 4.6530 -0.0014 28 1 6.5912 -0.0269 0.0028 29 1 5.4474 -4.0529 -0.4997 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396332332.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:53 Heat of formation + Delta-G solvation = -35.209659 kcal Electronic energy + Delta-G solvation = -16873.665605 eV Core-core repulsion = 14046.570670 eV Total energy + Delta-G solvation = -2827.094935 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.90428 -38.66713 -37.00838 -34.96376 -32.77702 -29.86918 -29.39993 -27.15139 -25.86949 -24.36584 -22.08389 -20.93074 -19.83674 -17.97590 -16.92354 -16.47261 -15.73754 -15.33761 -15.24329 -14.92689 -14.73655 -14.42211 -14.04214 -13.29625 -13.03839 -12.74310 -12.37877 -12.10212 -11.76718 -11.41223 -11.16026 -10.86301 -10.76223 -10.65607 -10.09411 -9.80964 -9.67135 -9.58974 -9.21304 -8.33917 -7.71761 -6.98460 -6.87092 -4.45432 0.83694 1.76912 2.47816 2.50702 3.00683 3.16663 3.29248 3.45687 3.49209 3.81365 4.01830 4.19555 4.41740 5.09474 5.16846 5.21438 5.36646 5.40592 5.50539 5.72475 5.77413 5.80304 6.20275 6.42798 6.51740 6.60712 6.91295 6.95084 7.31601 7.54218 7.56788 7.89087 8.33026 8.40573 8.76429 10.02524 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.022298 B = 0.008162 C = 0.006191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.392548 B = 3429.541109 C = 4521.422169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.288 6.288 3 C 0.166 3.834 4 C -0.202 4.202 5 C -0.160 4.160 6 C 0.389 3.611 7 O -0.472 6.472 8 C -0.061 4.061 9 C -0.122 4.122 10 S 0.082 5.918 11 C -0.460 4.460 12 C 0.088 3.912 13 C -0.402 4.402 14 H 0.105 0.895 15 C 0.085 3.915 16 N -0.803 5.803 17 Si 0.915 3.085 18 H -0.273 1.273 19 H -0.295 1.295 20 H -0.241 1.241 21 C -0.056 4.056 22 H 0.096 0.904 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.131 0.869 26 H 0.100 0.900 27 H 0.128 0.872 28 H 0.140 0.860 29 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.141 6.876 -0.794 9.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.200 6.200 3 C 0.118 3.882 4 C -0.225 4.225 5 C -0.164 4.164 6 C 0.249 3.751 7 O -0.346 6.346 8 C -0.085 4.085 9 C -0.238 4.238 10 S 0.347 5.653 11 C -0.595 4.595 12 C 0.080 3.920 13 C -0.433 4.433 14 H 0.123 0.877 15 C -0.135 4.135 16 N -0.427 5.427 17 Si 0.743 3.257 18 H -0.200 1.200 19 H -0.223 1.223 20 H -0.164 1.164 21 C -0.069 4.069 22 H 0.115 0.885 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.149 0.851 26 H 0.116 0.884 27 H 0.146 0.854 28 H 0.157 0.843 29 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.404 7.840 -0.778 9.554 hybrid contribution -0.742 -1.226 -0.459 1.505 sum -6.146 6.614 -1.237 9.113 Atomic orbital electron populations 1.23048 0.79879 1.03681 1.00613 1.86372 1.19856 1.26061 1.87707 1.18660 0.90259 0.84197 0.95075 1.20864 0.99241 0.91060 1.11367 1.20200 0.93940 0.94723 1.07568 1.23895 0.94630 0.86699 0.69846 1.90499 1.76934 1.31395 1.35774 1.20555 0.92125 0.96505 0.99286 1.22488 0.99095 0.95352 1.06830 1.81781 0.98483 1.04672 1.80376 1.23678 0.99938 0.96253 1.39661 1.17405 0.88405 0.92745 0.93493 1.19148 1.03208 0.88013 1.32938 0.87739 1.26141 0.97748 0.94317 0.95245 1.69790 1.35113 1.02515 1.35323 0.86179 0.80186 0.79210 0.80168 1.19962 1.22275 1.16449 1.19097 0.90613 0.93455 1.03688 0.88515 0.93082 0.93077 0.85086 0.88431 0.85436 0.84289 0.90396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.80 101.05 0.99 1.29 15 2 O -0.29 -5.56 8.38 -19.25 -0.16 -5.73 15 3 C 0.17 3.27 6.73 -38.68 -0.26 3.01 15 4 C -0.20 -3.17 8.75 -39.08 -0.34 -3.51 15 5 C -0.16 -2.56 5.86 -105.18 -0.62 -3.18 15 6 C 0.39 5.14 11.44 34.25 0.39 5.53 15 7 O -0.47 -7.75 17.14 5.55 0.10 -7.65 15 8 C -0.06 -1.12 9.61 -38.72 -0.37 -1.49 15 9 C -0.12 -2.57 6.42 -38.66 -0.25 -2.81 15 10 S 0.08 1.73 22.96 -107.50 -2.47 -0.74 15 11 C -0.46 -11.30 8.06 30.15 0.24 -11.06 15 12 C 0.09 2.25 5.32 -106.19 -0.56 1.69 15 13 C -0.40 -10.82 9.19 -38.05 -0.35 -11.17 15 14 H 0.10 2.93 6.55 -52.48 -0.34 2.58 15 15 C 0.09 2.23 5.46 -17.33 -0.09 2.14 15 16 N -0.80 -21.26 13.94 55.54 0.77 -20.49 15 17 Si 0.92 21.27 24.56 -169.99 -4.17 17.10 15 18 H -0.27 -6.24 6.67 56.52 0.38 -5.87 15 19 H -0.29 -6.59 7.11 56.52 0.40 -6.18 15 20 H -0.24 -5.77 6.75 56.52 0.38 -5.39 15 21 C -0.06 -1.29 6.04 -104.95 -0.63 -1.93 15 22 H 0.10 1.09 8.14 -51.93 -0.42 0.67 15 23 H 0.05 0.55 7.64 -51.93 -0.40 0.16 15 24 H 0.05 0.55 7.64 -51.93 -0.40 0.16 15 25 H 0.13 1.52 6.22 -52.49 -0.33 1.20 15 26 H 0.10 0.85 8.06 -52.48 -0.42 0.42 15 27 H 0.13 2.19 7.61 -52.49 -0.40 1.79 15 28 H 0.14 3.46 4.43 -52.49 -0.23 3.23 15 29 H 0.29 6.87 8.30 -40.82 -0.34 6.53 15 LS Contribution 264.79 15.07 3.99 3.99 Total: -1.00 -29.78 264.79 -5.92 -35.70 By element: Atomic # 1 Polarization: 1.42 SS G_CDS: -2.12 Total: -0.70 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: -1.86 Total: -21.49 kcal Atomic # 7 Polarization: -21.26 SS G_CDS: 0.77 Total: -20.49 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -0.07 Total: -13.38 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.17 Total: 17.10 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -2.47 Total: -0.74 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -29.78 -5.92 -35.70 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396332332.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.491 kcal (2) G-P(sol) polarization free energy of solvation -29.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds