Wall clock time and date at job start Mon Mar 30 2020 06:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35845 * 117.00094 * 2 1 4 4 C 1.37548 * 119.77575 * 359.97386 * 3 2 1 5 5 C 1.40244 * 120.00444 * 180.02562 * 4 3 2 6 6 C 1.46939 * 120.06805 * 180.02562 * 5 4 3 7 7 O 1.21294 * 120.00188 * 179.97438 * 6 5 4 8 8 C 1.39410 * 119.86723 * 359.97438 * 5 4 3 9 9 C 1.39377 * 120.36315 * 0.02562 * 8 5 4 10 10 S 1.75837 * 130.00468 * 180.30636 * 9 8 5 11 11 C 1.69967 * 93.22135 * 180.02562 * 10 9 8 12 12 C 1.36634 * 111.95360 * 359.65034 * 11 10 9 13 13 C 1.40860 * 123.27987 * 180.24364 * 12 11 10 14 14 H 1.08004 * 120.00138 * 156.28173 * 13 12 11 15 15 C 1.39697 * 119.99893 * 336.28248 * 13 12 11 16 16 N 1.31081 * 119.99749 * 161.36149 * 15 13 12 17 17 Si 1.86791 * 120.00136 * 341.36265 * 15 13 12 18 18 H 1.48499 * 109.47631 * 94.05420 * 17 15 13 19 19 H 1.48507 * 109.47265 * 214.05493 * 17 15 13 20 20 H 1.48496 * 109.47307 * 334.04840 * 17 15 13 21 21 C 1.39585 * 119.82443 * 359.97438 * 9 8 5 22 22 H 1.09004 * 109.47270 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47502 * 300.00410 * 1 2 3 24 24 H 1.09002 * 109.47079 * 60.00459 * 1 2 3 25 25 H 1.07996 * 119.99893 * 359.97438 * 4 3 2 26 26 H 1.08005 * 119.99664 * 359.96885 * 6 5 4 27 27 H 1.07999 * 119.82027 * 179.97438 * 8 5 4 28 28 H 1.07998 * 124.02427 * 179.90887 * 11 10 9 29 29 H 0.96998 * 119.99569 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2104 0.0000 4 6 1.2921 2.3610 -0.0005 5 6 1.9238 3.6131 -0.0011 6 6 1.1201 4.8432 -0.0011 7 8 1.6677 5.9255 -0.0011 8 6 3.3159 3.6884 -0.0005 9 6 4.0843 2.5256 0.0000 10 16 5.8312 2.3251 0.0080 11 6 5.7326 0.6283 0.0021 12 6 4.4379 0.1918 0.0021 13 6 4.0816 -1.1710 0.0027 14 1 3.1165 -1.4767 0.3789 15 6 4.9767 -2.1271 -0.4833 16 7 4.8256 -3.3890 -0.1625 17 14 6.3887 -1.6073 -1.5902 18 1 7.6031 -1.3755 -0.7677 19 1 6.6600 -2.6784 -2.5825 20 1 6.0255 -0.3550 -2.3008 21 6 3.4568 1.2788 0.0006 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 0.2139 2.3003 -0.0014 26 1 0.0417 4.7836 -0.0012 27 1 3.8016 4.6530 -0.0014 28 1 6.5912 -0.0269 0.0028 29 1 5.4474 -4.0529 -0.4997 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396332332.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:53 Heat of formation + Delta-G solvation = -54.750005 kcal Electronic energy + Delta-G solvation = -16874.512938 eV Core-core repulsion = 14046.570670 eV Total energy + Delta-G solvation = -2827.942268 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.28449 -39.87787 -38.48735 -36.64632 -34.59966 -31.39793 -30.82257 -28.43598 -27.55736 -25.78191 -23.55349 -22.33454 -21.47480 -19.39216 -18.73933 -17.86149 -17.30776 -16.74555 -16.57405 -16.40614 -16.04606 -15.89892 -15.22162 -14.99038 -14.64168 -14.29107 -14.05135 -13.70595 -13.23585 -12.99664 -12.75731 -12.34000 -12.28921 -12.12853 -11.70263 -11.59197 -11.44533 -11.06030 -10.77345 -9.91338 -9.33736 -8.94995 -8.50231 -6.41925 -0.54657 0.33013 0.91761 0.96940 1.23076 1.28412 1.45188 1.69805 1.80048 2.11139 2.54096 2.70179 3.17162 3.35023 3.85868 4.07771 4.11870 4.24803 4.43108 4.51788 4.56652 4.65462 4.80724 4.93952 5.00346 5.11398 5.22375 5.47433 5.62031 5.64950 6.30837 6.45159 6.50501 6.62125 6.78564 8.11434 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.022298 B = 0.008162 C = 0.006191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.392548 B = 3429.541109 C = 4521.422169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.326 6.326 3 C 0.152 3.848 4 C -0.173 4.173 5 C -0.146 4.146 6 C 0.405 3.595 7 O -0.501 6.501 8 C -0.080 4.080 9 C -0.128 4.128 10 S 0.101 5.899 11 C -0.477 4.477 12 C 0.075 3.925 13 C -0.431 4.431 14 H 0.080 0.920 15 C 0.054 3.946 16 N -0.838 5.838 17 Si 0.963 3.037 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.256 1.256 21 C -0.107 4.107 22 H 0.104 0.896 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.185 0.815 26 H 0.170 0.830 27 H 0.136 0.864 28 H 0.129 0.871 29 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.669 9.272 -1.187 13.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.239 6.239 3 C 0.104 3.896 4 C -0.195 4.195 5 C -0.151 4.151 6 C 0.266 3.734 7 O -0.376 6.376 8 C -0.104 4.104 9 C -0.244 4.244 10 S 0.365 5.635 11 C -0.612 4.612 12 C 0.066 3.934 13 C -0.463 4.463 14 H 0.098 0.902 15 C -0.163 4.163 16 N -0.464 5.464 17 Si 0.788 3.212 18 H -0.196 1.196 19 H -0.205 1.205 20 H -0.180 1.180 21 C -0.118 4.118 22 H 0.122 0.878 23 H 0.095 0.905 24 H 0.095 0.905 25 H 0.202 0.798 26 H 0.185 0.815 27 H 0.153 0.847 28 H 0.146 0.854 29 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.954 10.229 -1.168 13.010 hybrid contribution -0.196 -1.797 -0.283 1.829 sum -8.150 8.432 -1.451 11.816 Atomic orbital electron populations 1.23449 0.76637 1.05263 1.03025 1.86331 1.23355 1.26512 1.87672 1.18885 0.89571 0.85777 0.95382 1.21357 1.01510 0.89140 1.07496 1.20847 0.93317 0.96686 1.04202 1.24632 0.96671 0.84343 0.67799 1.90524 1.77945 1.32287 1.36825 1.20781 0.93509 0.95721 1.00417 1.22654 0.98748 0.95899 1.07062 1.81446 0.99461 1.01535 1.81063 1.23854 0.99522 0.98643 1.39149 1.17680 0.89736 0.93092 0.92923 1.19133 1.02760 0.89306 1.35118 0.90179 1.26684 0.99348 0.94295 0.95925 1.69802 1.36597 1.03186 1.36832 0.85462 0.78167 0.78555 0.78982 1.19646 1.20484 1.17951 1.19267 0.92401 0.93039 1.07044 0.87777 0.90483 0.90456 0.79782 0.81450 0.84663 0.85351 0.89544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 9.80 113.37 1.11 1.34 15 2 O -0.33 -12.41 8.38 -91.81 -0.77 -13.18 15 3 C 0.15 5.79 6.73 22.85 0.15 5.94 15 4 C -0.17 -4.63 8.75 22.59 0.20 -4.43 15 5 C -0.15 -4.03 5.86 -20.23 -0.12 -4.15 15 6 C 0.40 8.19 11.44 70.10 0.80 8.99 15 7 O -0.50 -14.18 17.14 -3.07 -0.05 -14.23 15 8 C -0.08 -2.78 9.61 22.83 0.22 -2.56 15 9 C -0.13 -5.36 6.42 22.87 0.15 -5.21 15 10 S 0.10 4.31 22.96 -56.49 -1.30 3.01 15 11 C -0.48 -24.20 8.06 67.44 0.54 -23.65 15 12 C 0.08 3.98 5.32 -20.88 -0.11 3.87 15 13 C -0.43 -24.46 9.19 23.26 0.21 -24.25 15 14 H 0.08 4.79 6.55 -2.91 -0.02 4.77 15 15 C 0.05 2.93 5.46 85.16 0.46 3.40 15 16 N -0.84 -46.15 13.94 21.79 0.30 -45.84 15 17 Si 0.96 45.28 24.56 68.60 1.68 46.96 15 18 H -0.27 -12.40 6.67 99.48 0.66 -11.74 15 19 H -0.28 -12.12 7.11 99.48 0.71 -11.41 15 20 H -0.26 -12.45 6.75 99.48 0.67 -11.78 15 21 C -0.11 -4.94 6.04 -20.08 -0.12 -5.06 15 22 H 0.10 2.16 8.14 -2.39 -0.02 2.14 15 23 H 0.08 1.32 7.64 -2.39 -0.02 1.31 15 24 H 0.08 1.33 7.64 -2.39 -0.02 1.31 15 25 H 0.19 2.91 6.22 -2.91 -0.02 2.89 15 26 H 0.17 1.36 8.06 -2.91 -0.02 1.34 15 27 H 0.14 4.40 7.61 -2.91 -0.02 4.38 15 28 H 0.13 6.63 4.43 -2.91 -0.01 6.62 15 29 H 0.29 14.60 8.30 -92.71 -0.77 13.83 15 Total: -1.00 -69.90 264.79 4.49 -65.41 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: 1.12 Total: 3.65 kcal Atomic # 6 Polarization: -49.27 SS G_CDS: 3.50 Total: -45.77 kcal Atomic # 7 Polarization: -46.15 SS G_CDS: 0.30 Total: -45.84 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -0.82 Total: -27.41 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.68 Total: 46.96 kcal Atomic # 16 Polarization: 4.31 SS G_CDS: -1.30 Total: 3.01 kcal Total: -69.90 4.49 -65.41 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396332332.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.657 kcal (2) G-P(sol) polarization free energy of solvation -69.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds