Wall clock time and date at job start Mon Mar 30 2020 06:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35695 * 116.99906 * 2 1 4 4 C 1.38055 * 118.82894 * 0.23633 * 3 2 1 5 5 C 1.39640 * 120.79176 * 180.27142 * 4 3 2 6 6 C 1.46273 * 120.43740 * 179.74478 * 5 4 3 7 7 O 1.21395 * 120.00157 * 174.72914 * 6 5 4 8 8 C 1.46491 * 119.12403 * 359.46408 * 5 4 3 9 9 C 1.39580 * 120.65467 * 180.26003 * 8 5 4 10 10 H 1.08009 * 119.99572 * 317.37835 * 9 8 5 11 11 C 1.40472 * 120.00397 * 137.38146 * 9 8 5 12 12 N 1.30563 * 120.00063 * 343.06881 * 11 9 8 13 13 Si 1.86799 * 120.00101 * 163.07015 * 11 9 8 14 14 H 1.48495 * 109.47302 * 59.99849 * 13 11 9 15 15 H 1.48499 * 109.46996 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47142 * 300.00081 * 13 11 9 17 17 C 1.48000 * 118.69536 * 0.27909 * 8 5 4 18 18 C 1.39968 * 128.84700 * 180.02562 * 17 8 5 19 19 C 1.32742 * 115.80047 * 179.97438 * 18 17 8 20 20 S 1.75484 * 110.64371 * 359.97438 * 19 18 17 21 21 C 1.39605 * 118.35464 * 0.02562 * 17 8 5 22 22 H 1.09000 * 109.46473 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47443 * 299.99842 * 1 2 3 24 24 H 1.08999 * 109.46666 * 60.00108 * 1 2 3 25 25 H 1.07999 * 119.60881 * 0.02562 * 4 3 2 26 26 H 1.08007 * 120.00130 * 354.71998 * 6 5 4 27 27 H 0.96991 * 120.00142 * 176.20520 * 12 11 9 28 28 H 1.07998 * 122.10004 * 359.97344 * 18 17 8 29 29 H 1.07998 * 124.68177 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2091 0.0000 4 6 1.2696 2.3513 0.0050 5 6 1.8605 3.6165 -0.0005 6 6 1.0314 4.8215 -0.0008 7 8 1.5502 5.9152 0.0910 8 6 3.3217 3.7209 0.0003 9 6 3.9459 4.9694 0.0004 10 1 3.5721 5.7600 -0.6334 11 6 5.0603 5.1975 0.8246 12 7 5.3155 4.3875 1.8163 13 14 6.1770 6.6597 0.5019 14 1 5.3910 7.9153 0.6058 15 1 7.2718 6.6773 1.5051 16 1 6.7557 6.5494 -0.8612 17 6 4.1231 2.4767 0.0006 18 6 5.5149 2.3289 0.0018 19 6 5.9632 1.0794 0.0023 20 16 4.6265 -0.0575 0.0020 21 6 3.4492 1.2540 -0.0005 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 0.1930 2.2653 0.0092 26 1 -0.0423 4.7383 -0.0828 27 1 6.1147 4.5127 2.3514 28 1 6.1822 3.1780 0.0023 29 1 7.0067 0.8009 0.0028 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396333790.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:23 Heat of formation + Delta-G solvation = -27.016435 kcal Electronic energy + Delta-G solvation = -17163.423831 eV Core-core repulsion = 14336.684181 eV Total energy + Delta-G solvation = -2826.739650 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.98801 -37.61733 -36.77256 -33.90294 -33.29217 -29.68489 -28.89381 -26.71840 -25.27506 -23.39481 -22.04157 -20.39284 -18.79676 -18.10119 -16.91716 -15.97561 -15.54574 -15.02657 -14.96274 -14.32063 -14.12093 -13.84577 -13.39510 -12.99351 -12.40184 -12.20984 -12.10634 -11.75894 -11.58372 -11.46507 -10.96960 -10.89310 -10.80713 -10.61485 -10.26644 -9.83253 -9.54141 -9.13191 -8.37194 -7.99119 -7.45295 -7.22761 -6.46792 -4.58671 1.58574 2.24272 2.53908 2.94460 2.96332 2.98879 3.02536 3.19970 3.74460 3.92597 4.16780 4.35528 5.18090 5.41747 5.54060 5.61617 5.71269 5.84711 5.93135 6.28169 6.39112 6.49294 6.68481 6.78364 6.99608 7.10178 7.21239 7.35226 7.56607 7.66390 8.15406 8.27925 8.40178 8.57106 8.89810 9.78652 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.019061 B = 0.009735 C = 0.006675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.626640 B = 2875.664806 C = 4193.978923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.331 6.331 3 C 0.006 3.994 4 C -0.088 4.088 5 C -0.312 4.312 6 C 0.372 3.628 7 O -0.488 6.488 8 C 0.183 3.817 9 C -0.391 4.391 10 H 0.107 0.893 11 C 0.073 3.927 12 N -0.754 5.754 13 Si 0.910 3.090 14 H -0.257 1.257 15 H -0.274 1.274 16 H -0.258 1.258 17 C -0.104 4.104 18 C -0.041 4.041 19 C -0.266 4.266 20 S 0.042 5.958 21 C -0.083 4.083 22 H 0.084 0.916 23 H 0.045 0.955 24 H 0.045 0.955 25 H 0.111 0.889 26 H 0.061 0.939 27 H 0.292 0.708 28 H 0.130 0.870 29 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.888 -4.345 -2.024 5.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.246 6.246 3 C -0.041 4.041 4 C -0.110 4.110 5 C -0.317 4.317 6 C 0.238 3.762 7 O -0.368 6.368 8 C 0.176 3.824 9 C -0.417 4.417 10 H 0.124 0.876 11 C -0.150 4.150 12 N -0.376 5.376 13 Si 0.733 3.267 14 H -0.181 1.181 15 H -0.199 1.199 16 H -0.182 1.182 17 C -0.112 4.112 18 C -0.071 4.071 19 C -0.400 4.400 20 S 0.304 5.696 21 C -0.199 4.199 22 H 0.102 0.898 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.129 0.871 26 H 0.077 0.923 27 H 0.104 0.896 28 H 0.148 0.852 29 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.380 -5.584 -1.726 6.005 hybrid contribution 0.323 1.958 0.137 1.989 sum -1.057 -3.625 -1.589 4.097 Atomic orbital electron populations 1.22760 0.80545 1.02133 1.00472 1.85871 1.19440 1.28032 1.91300 1.17288 0.88523 0.83651 1.14663 1.20656 0.97292 0.91604 1.01414 1.20887 0.93452 0.93177 1.24172 1.22924 0.92359 0.87691 0.73240 1.90458 1.77429 1.30069 1.38843 1.19349 0.88758 0.90352 0.83927 1.19757 1.07143 0.97919 1.16904 0.87552 1.26195 0.96938 0.98398 0.93516 1.69715 1.23086 1.34372 1.10420 0.86287 0.79068 0.81651 0.79700 1.18060 1.19897 1.18190 1.19090 0.91888 0.91689 1.08555 1.19746 0.94579 0.96107 0.96662 1.24843 1.01092 0.96164 1.17879 1.83598 0.96525 1.09897 1.79564 1.21810 0.93777 0.95977 1.08375 0.89751 0.93660 0.93678 0.87079 0.92269 0.89633 0.85236 0.83381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 9.77 101.05 0.99 1.52 15 2 O -0.33 -6.57 10.40 -18.79 -0.20 -6.77 15 3 C 0.01 0.14 6.70 -38.80 -0.26 -0.12 15 4 C -0.09 -1.85 8.68 -39.13 -0.34 -2.19 15 5 C -0.31 -7.33 6.05 -102.82 -0.62 -7.96 15 6 C 0.37 8.09 11.40 33.96 0.39 8.48 15 7 O -0.49 -12.19 14.78 5.46 0.08 -12.11 15 8 C 0.18 4.68 5.62 -102.07 -0.57 4.11 15 9 C -0.39 -9.97 7.30 -38.24 -0.28 -10.24 15 10 H 0.11 2.76 6.56 -52.48 -0.34 2.42 15 11 C 0.07 1.73 3.97 -17.25 -0.07 1.66 15 12 N -0.75 -18.21 10.92 55.58 0.61 -17.60 15 13 Si 0.91 17.78 29.60 -169.99 -5.03 12.74 15 14 H -0.26 -5.14 7.11 56.52 0.40 -4.74 15 15 H -0.27 -5.13 7.11 56.52 0.40 -4.73 15 16 H -0.26 -4.91 7.11 56.52 0.40 -4.50 15 17 C -0.10 -2.57 5.50 -104.74 -0.58 -3.14 15 18 C -0.04 -0.94 8.30 -40.81 -0.34 -1.28 15 19 C -0.27 -5.37 11.11 28.85 0.32 -5.05 15 20 S 0.04 0.86 23.23 -107.50 -2.50 -1.64 15 21 C -0.08 -1.96 6.42 -38.22 -0.25 -2.21 15 22 H 0.08 0.97 8.14 -51.93 -0.42 0.55 15 23 H 0.04 0.61 7.58 -51.93 -0.39 0.22 15 24 H 0.04 0.60 7.60 -51.93 -0.39 0.20 15 25 H 0.11 1.93 6.06 -52.49 -0.32 1.61 15 26 H 0.06 1.04 8.06 -52.48 -0.42 0.62 15 27 H 0.29 6.38 8.29 -40.82 -0.34 6.04 15 28 H 0.13 2.90 6.25 -52.49 -0.33 2.57 15 29 H 0.15 2.50 8.06 -52.49 -0.42 2.08 15 LS Contribution 267.69 15.07 4.03 4.03 Total: -1.00 -28.64 267.69 -6.79 -35.43 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -2.18 Total: 2.33 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: -1.61 Total: -16.42 kcal Atomic # 7 Polarization: -18.21 SS G_CDS: 0.61 Total: -17.60 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.11 Total: -18.87 kcal Atomic # 14 Polarization: 17.78 SS G_CDS: -5.03 Total: 12.74 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -2.50 Total: -1.64 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -28.64 -6.79 -35.43 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396333790.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.418 kcal (2) G-P(sol) polarization free energy of solvation -28.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds