Wall clock time and date at job start Mon Mar 30 2020 06:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35695 * 116.99906 * 2 1 4 4 C 1.38055 * 118.82894 * 0.23633 * 3 2 1 5 5 C 1.39640 * 120.79176 * 180.27142 * 4 3 2 6 6 C 1.46273 * 120.43740 * 179.74478 * 5 4 3 7 7 O 1.21395 * 120.00157 * 174.72914 * 6 5 4 8 8 C 1.46491 * 119.12403 * 359.46408 * 5 4 3 9 9 C 1.39580 * 120.65467 * 180.26003 * 8 5 4 10 10 H 1.08009 * 119.99572 * 317.37835 * 9 8 5 11 11 C 1.40472 * 120.00397 * 137.38146 * 9 8 5 12 12 N 1.30563 * 120.00063 * 343.06881 * 11 9 8 13 13 Si 1.86799 * 120.00101 * 163.07015 * 11 9 8 14 14 H 1.48495 * 109.47302 * 59.99849 * 13 11 9 15 15 H 1.48499 * 109.46996 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47142 * 300.00081 * 13 11 9 17 17 C 1.48000 * 118.69536 * 0.27909 * 8 5 4 18 18 C 1.39968 * 128.84700 * 180.02562 * 17 8 5 19 19 C 1.32742 * 115.80047 * 179.97438 * 18 17 8 20 20 S 1.75484 * 110.64371 * 359.97438 * 19 18 17 21 21 C 1.39605 * 118.35464 * 0.02562 * 17 8 5 22 22 H 1.09000 * 109.46473 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47443 * 299.99842 * 1 2 3 24 24 H 1.08999 * 109.46666 * 60.00108 * 1 2 3 25 25 H 1.07999 * 119.60881 * 0.02562 * 4 3 2 26 26 H 1.08007 * 120.00130 * 354.71998 * 6 5 4 27 27 H 0.96991 * 120.00142 * 176.20520 * 12 11 9 28 28 H 1.07998 * 122.10004 * 359.97344 * 18 17 8 29 29 H 1.07998 * 124.68177 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2091 0.0000 4 6 1.2696 2.3513 0.0050 5 6 1.8605 3.6165 -0.0005 6 6 1.0314 4.8215 -0.0008 7 8 1.5502 5.9152 0.0910 8 6 3.3217 3.7209 0.0003 9 6 3.9459 4.9694 0.0004 10 1 3.5721 5.7600 -0.6334 11 6 5.0603 5.1975 0.8246 12 7 5.3155 4.3875 1.8163 13 14 6.1770 6.6597 0.5019 14 1 5.3910 7.9153 0.6058 15 1 7.2718 6.6773 1.5051 16 1 6.7557 6.5494 -0.8612 17 6 4.1231 2.4767 0.0006 18 6 5.5149 2.3289 0.0018 19 6 5.9632 1.0794 0.0023 20 16 4.6265 -0.0575 0.0020 21 6 3.4492 1.2540 -0.0005 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 0.1930 2.2653 0.0092 26 1 -0.0423 4.7383 -0.0828 27 1 6.1147 4.5127 2.3514 28 1 6.1822 3.1780 0.0023 29 1 7.0067 0.8009 0.0028 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396333790.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:22 Heat of formation + Delta-G solvation = -43.775772 kcal Electronic energy + Delta-G solvation = -17164.150571 eV Core-core repulsion = 14336.684181 eV Total energy + Delta-G solvation = -2827.466390 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.60152 -39.29884 -38.46616 -35.64599 -34.96401 -31.36700 -30.58491 -28.05464 -26.96171 -25.09293 -23.73875 -22.03125 -20.49464 -19.81501 -18.52110 -17.67116 -17.19521 -16.66309 -16.35869 -15.87371 -15.78389 -15.44352 -15.04311 -14.75693 -14.09152 -13.85222 -13.72393 -13.32427 -13.19993 -13.08157 -12.65704 -12.41511 -12.25988 -12.07503 -11.88723 -11.52731 -11.21624 -10.81674 -10.10496 -9.68466 -9.15082 -8.95924 -8.16515 -6.38672 -0.11931 0.48126 0.88411 1.29992 1.34446 1.43376 1.45698 1.53359 2.13977 2.19153 2.60757 2.76667 3.41522 3.82405 4.14875 4.35171 4.46890 4.54517 4.66727 4.70016 4.81335 4.85080 5.00717 5.04052 5.28472 5.40539 5.55703 5.64338 5.82819 5.94276 6.34978 6.54849 6.66592 6.89860 7.20421 8.08902 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.019061 B = 0.009735 C = 0.006675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.626640 B = 2875.664806 C = 4193.978923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.346 6.346 3 C 0.006 3.994 4 C -0.088 4.088 5 C -0.335 4.335 6 C 0.374 3.626 7 O -0.526 6.526 8 C 0.149 3.851 9 C -0.424 4.424 10 H 0.088 0.912 11 C 0.044 3.956 12 N -0.783 5.783 13 Si 0.971 3.029 14 H -0.267 1.267 15 H -0.257 1.257 16 H -0.251 1.251 17 C -0.126 4.126 18 C -0.068 4.068 19 C -0.250 4.250 20 S 0.081 5.919 21 C -0.121 4.121 22 H 0.115 0.885 23 H 0.054 0.946 24 H 0.059 0.941 25 H 0.152 0.848 26 H 0.120 0.880 27 H 0.300 0.700 28 H 0.124 0.876 29 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.384 -5.609 -2.101 6.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.262 6.262 3 C -0.042 4.042 4 C -0.110 4.110 5 C -0.341 4.341 6 C 0.242 3.758 7 O -0.408 6.408 8 C 0.143 3.857 9 C -0.451 4.451 10 H 0.105 0.895 11 C -0.177 4.177 12 N -0.407 5.407 13 Si 0.791 3.209 14 H -0.192 1.192 15 H -0.181 1.181 16 H -0.175 1.175 17 C -0.135 4.135 18 C -0.098 4.098 19 C -0.383 4.383 20 S 0.343 5.657 21 C -0.237 4.237 22 H 0.134 0.866 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.169 0.831 26 H 0.136 0.864 27 H 0.111 0.889 28 H 0.142 0.858 29 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -1.896 -6.881 -1.805 7.362 hybrid contribution 0.331 2.146 0.145 2.176 sum -1.566 -4.735 -1.661 5.256 Atomic orbital electron populations 1.23157 0.77605 1.04699 1.01547 1.85848 1.22477 1.26805 1.91046 1.17514 0.88563 0.84903 1.13258 1.20964 0.99263 0.90287 1.00464 1.21388 0.93295 0.95117 1.24260 1.23616 0.94489 0.86340 0.71379 1.90447 1.78626 1.31289 1.40430 1.19834 0.90303 0.91027 0.84579 1.19730 1.09172 0.97759 1.18408 0.89450 1.26809 0.97523 1.00624 0.92727 1.69729 1.23888 1.35988 1.11068 0.85402 0.77494 0.77811 0.80179 1.19187 1.18083 1.17495 1.19350 0.92935 0.91990 1.09193 1.19773 0.94059 0.97024 0.98896 1.25295 1.02885 0.95339 1.14819 1.83341 0.95212 1.08325 1.78795 1.22264 0.95347 0.96951 1.09143 0.86647 0.92693 0.92291 0.83091 0.86411 0.88902 0.85780 0.79902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 9.77 113.37 1.11 1.73 15 2 O -0.35 -12.96 10.40 -90.15 -0.94 -13.89 15 3 C 0.01 0.24 6.70 22.78 0.15 0.40 15 4 C -0.09 -3.59 8.68 22.57 0.20 -3.39 15 5 C -0.34 -15.82 6.05 -18.70 -0.11 -15.93 15 6 C 0.37 16.03 11.40 69.91 0.80 16.83 15 7 O -0.53 -26.73 14.78 -3.39 -0.05 -26.78 15 8 C 0.15 7.85 5.62 -18.21 -0.10 7.75 15 9 C -0.42 -22.56 7.30 23.14 0.17 -22.39 15 10 H 0.09 4.81 6.56 -2.91 -0.02 4.79 15 11 C 0.04 2.13 3.97 85.43 0.34 2.47 15 12 N -0.78 -38.78 10.92 21.92 0.24 -38.54 15 13 Si 0.97 37.27 29.60 68.60 2.03 39.30 15 14 H -0.27 -10.59 7.11 99.48 0.71 -9.89 15 15 H -0.26 -9.02 7.11 99.48 0.71 -8.32 15 16 H -0.25 -9.24 7.11 99.48 0.71 -8.53 15 17 C -0.13 -6.34 5.50 -19.94 -0.11 -6.45 15 18 C -0.07 -3.12 8.30 21.51 0.18 -2.94 15 19 C -0.25 -9.73 11.11 66.65 0.74 -8.99 15 20 S 0.08 3.17 23.23 -56.49 -1.31 1.86 15 21 C -0.12 -5.66 6.42 23.15 0.15 -5.51 15 22 H 0.12 2.19 8.14 -2.39 -0.02 2.17 15 23 H 0.05 1.29 7.58 -2.39 -0.02 1.28 15 24 H 0.06 1.34 7.60 -2.39 -0.02 1.32 15 25 H 0.15 4.72 6.06 -2.91 -0.02 4.71 15 26 H 0.12 3.70 8.06 -2.91 -0.02 3.68 15 27 H 0.30 13.28 8.29 -92.71 -0.77 12.51 15 28 H 0.12 5.69 6.25 -2.91 -0.02 5.67 15 29 H 0.18 5.66 8.06 -2.91 -0.02 5.64 15 Total: -1.00 -64.13 267.69 4.67 -59.46 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 1.19 Total: 15.04 kcal Atomic # 6 Polarization: -39.95 SS G_CDS: 3.51 Total: -36.44 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: 0.24 Total: -38.54 kcal Atomic # 8 Polarization: -39.68 SS G_CDS: -0.99 Total: -40.67 kcal Atomic # 14 Polarization: 37.27 SS G_CDS: 2.03 Total: 39.30 kcal Atomic # 16 Polarization: 3.17 SS G_CDS: -1.31 Total: 1.86 kcal Total: -64.13 4.67 -59.46 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396333790.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.688 kcal (2) G-P(sol) polarization free energy of solvation -64.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds