Wall clock time and date at job start Mon Mar 30 2020 06:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.36119 * 117.00015 * 2 1 4 4 C 1.33342 * 122.13582 * 359.71747 * 3 2 1 5 5 S 1.75486 * 110.65581 * 179.85610 * 4 3 2 6 6 C 1.76103 * 91.55939 * 0.33745 * 5 4 3 7 7 C 1.39112 * 130.37593 * 179.81503 * 6 5 4 8 8 C 1.39764 * 121.34117 * 180.02562 * 7 6 5 9 9 C 1.46947 * 119.67088 * 179.97438 * 8 7 6 10 10 O 1.21280 * 120.00336 * 180.02562 * 9 8 7 11 11 C 1.39465 * 120.66713 * 359.97438 * 8 7 6 12 12 C 1.39887 * 119.94467 * 359.97438 * 11 8 7 13 13 C 1.40690 * 120.28045 * 180.02562 * 12 11 8 14 14 H 1.07993 * 120.00239 * 206.69104 * 13 12 11 15 15 C 1.39927 * 119.99623 * 26.68912 * 13 12 11 16 16 N 1.30869 * 120.00362 * 14.81942 * 15 13 12 17 17 Si 1.86801 * 119.99338 * 194.82124 * 15 13 12 18 18 H 1.48495 * 109.47508 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47056 * 120.00020 * 17 15 13 20 20 H 1.48505 * 109.46964 * 239.99854 * 17 15 13 21 21 C 1.39947 * 122.13205 * 179.97438 * 3 2 1 22 22 H 1.08999 * 109.46787 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.46865 * 299.99946 * 1 2 3 24 24 H 1.09002 * 109.47086 * 59.99647 * 1 2 3 25 25 H 1.08001 * 124.67140 * 359.97438 * 4 3 2 26 26 H 1.08007 * 119.33530 * 359.97438 * 7 6 5 27 27 H 1.08010 * 119.99464 * 0.02562 * 9 8 7 28 28 H 1.08004 * 120.02526 * 179.97438 * 11 8 7 29 29 H 0.96994 * 120.00000 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0470 1.2128 0.0000 4 6 1.3630 2.3574 -0.0056 5 16 2.4549 3.7312 0.0003 6 6 3.8628 2.6733 0.0001 7 6 5.2199 2.9793 0.0002 8 6 6.1916 1.9746 -0.0005 9 6 7.6150 2.3395 -0.0010 10 8 8.4633 1.4726 -0.0020 11 6 5.8239 0.6293 -0.0007 12 6 4.4705 0.2754 0.0003 13 6 4.0916 -1.0795 0.0007 14 1 3.1412 -1.3746 -0.4187 15 6 4.9464 -2.0448 0.5444 16 7 5.9479 -1.6791 1.3032 17 14 4.6577 -3.8554 0.1870 18 1 3.4692 -4.0034 -0.6909 19 1 5.8494 -4.4216 -0.4945 20 1 4.4253 -4.5807 1.4619 21 6 3.4409 1.3380 0.0005 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.2854 2.4291 -0.0109 26 1 5.5290 4.0141 -0.0001 27 1 7.9059 3.3797 -0.0004 28 1 6.5834 -0.1385 -0.0016 29 1 6.5402 -2.3483 1.6804 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396333837.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:17 Heat of formation + Delta-G solvation = -35.485917 kcal Electronic energy + Delta-G solvation = -16934.984104 eV Core-core repulsion = 14107.877190 eV Total energy + Delta-G solvation = -2827.106915 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.16455 -38.35399 -36.76340 -34.32290 -32.83673 -30.14986 -28.34249 -27.14506 -25.63762 -23.73754 -21.62368 -20.71656 -19.18603 -17.95348 -16.65369 -16.00850 -15.63786 -15.15216 -15.10413 -15.01147 -14.18280 -13.44707 -13.41303 -13.24588 -12.98534 -12.39274 -12.03814 -11.77321 -11.53541 -11.38506 -11.20024 -10.84090 -10.71154 -10.47117 -10.26255 -9.75823 -9.61316 -9.37782 -8.97531 -8.11715 -7.49657 -7.15454 -6.65529 -4.58559 1.33874 2.52604 2.57598 2.69552 2.91306 2.97194 2.99783 3.05148 3.68293 3.71559 4.10667 4.33969 5.06068 5.28893 5.49643 5.56461 5.70111 5.83683 5.96776 6.25302 6.28273 6.61994 6.68801 6.78113 6.88451 6.92698 7.33759 7.52926 7.61742 7.73418 8.09673 8.20667 8.26614 8.42992 8.52115 9.73683 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.013903 B = 0.010900 C = 0.006224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.447734 B = 2568.286879 C = 4497.433905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.292 6.292 3 C 0.189 3.811 4 C -0.390 4.390 5 S 0.016 5.984 6 C -0.056 4.056 7 C -0.197 4.197 8 C -0.137 4.137 9 C 0.383 3.617 10 O -0.474 6.474 11 C -0.112 4.112 12 C 0.141 3.859 13 C -0.394 4.394 14 H 0.103 0.897 15 C 0.063 3.937 16 N -0.756 5.756 17 Si 0.922 3.078 18 H -0.254 1.254 19 H -0.267 1.267 20 H -0.269 1.269 21 C -0.197 4.197 22 H 0.090 0.910 23 H 0.047 0.953 24 H 0.046 0.954 25 H 0.147 0.853 26 H 0.103 0.897 27 H 0.086 0.914 28 H 0.138 0.862 29 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.033 2.264 -1.420 5.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.205 6.205 3 C 0.134 3.866 4 C -0.523 4.523 5 S 0.274 5.726 6 C -0.171 4.171 7 C -0.224 4.224 8 C -0.141 4.141 9 C 0.244 3.756 10 O -0.349 6.349 11 C -0.134 4.134 12 C 0.135 3.865 13 C -0.420 4.420 14 H 0.121 0.879 15 C -0.160 4.160 16 N -0.378 5.378 17 Si 0.745 3.255 18 H -0.177 1.177 19 H -0.191 1.191 20 H -0.194 1.194 21 C -0.204 4.204 22 H 0.109 0.891 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.165 0.835 26 H 0.121 0.879 27 H 0.102 0.898 28 H 0.156 0.844 29 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.645 3.007 -1.257 5.675 hybrid contribution -0.459 -1.864 0.052 1.920 sum -5.105 1.143 -1.205 5.368 Atomic orbital electron populations 1.22915 0.80499 1.02757 1.00576 1.86273 1.19336 1.26419 1.88508 1.17566 0.90871 0.83549 0.94636 1.24152 1.01705 0.94799 1.31667 1.83280 0.96243 1.09303 1.83772 1.21799 0.96403 0.94465 1.04384 1.19500 0.89202 0.96932 1.16753 1.20269 0.94055 0.94721 1.05082 1.23983 0.88162 0.93567 0.69909 1.90460 1.53810 1.54770 1.35860 1.21585 0.96225 0.94023 1.01599 1.18369 0.89582 0.91270 0.87263 1.20046 1.03360 0.90719 1.27908 0.87887 1.26261 0.93577 1.03264 0.92872 1.69812 1.11205 1.37919 1.18876 0.86004 0.80132 0.79720 0.79669 1.17721 1.19145 1.19386 1.18392 0.89749 0.92866 1.19363 0.89131 0.93456 0.93504 0.83535 0.87882 0.89769 0.84406 0.89636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.91 101.05 1.00 1.43 15 2 O -0.29 -6.13 8.31 -20.12 -0.17 -6.30 15 3 C 0.19 4.24 6.63 -40.65 -0.27 3.97 15 4 C -0.39 -7.81 9.99 29.02 0.29 -7.52 15 5 S 0.02 0.32 23.29 -107.50 -2.50 -2.18 15 6 C -0.06 -1.27 6.46 -38.58 -0.25 -1.52 15 7 C -0.20 -4.21 9.73 -38.69 -0.38 -4.59 15 8 C -0.14 -3.07 5.84 -105.34 -0.62 -3.69 15 9 C 0.38 7.44 11.42 34.26 0.39 7.83 15 10 O -0.47 -10.69 17.11 5.56 0.10 -10.60 15 11 C -0.11 -2.83 8.18 -38.51 -0.31 -3.15 15 12 C 0.14 3.64 5.74 -104.37 -0.60 3.04 15 13 C -0.39 -9.86 8.49 -38.02 -0.32 -10.18 15 14 H 0.10 2.53 6.25 -52.49 -0.33 2.20 15 15 C 0.06 1.48 5.18 -17.33 -0.09 1.39 15 16 N -0.76 -18.41 10.92 55.55 0.61 -17.80 15 17 Si 0.92 17.43 29.58 -169.99 -5.03 12.40 15 18 H -0.25 -4.75 7.11 56.52 0.40 -4.34 15 19 H -0.27 -4.96 7.11 56.52 0.40 -4.56 15 20 H -0.27 -4.98 7.11 56.52 0.40 -4.58 15 21 C -0.20 -4.86 6.03 -104.60 -0.63 -5.49 15 22 H 0.09 1.12 8.14 -51.93 -0.42 0.70 15 23 H 0.05 0.65 7.83 -51.93 -0.41 0.25 15 24 H 0.05 0.64 7.81 -51.93 -0.41 0.23 15 25 H 0.15 2.52 6.90 -52.49 -0.36 2.16 15 26 H 0.10 1.87 8.06 -52.48 -0.42 1.44 15 27 H 0.09 1.24 8.06 -52.48 -0.42 0.82 15 28 H 0.14 3.66 5.72 -52.48 -0.30 3.36 15 29 H 0.29 6.40 8.30 -40.82 -0.34 6.06 15 LS Contribution 271.19 15.07 4.09 4.09 Total: -1.00 -28.23 271.19 -6.90 -35.14 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -2.20 Total: 3.73 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: -1.79 Total: -18.48 kcal Atomic # 7 Polarization: -18.41 SS G_CDS: 0.61 Total: -17.80 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.07 Total: -16.89 kcal Atomic # 14 Polarization: 17.43 SS G_CDS: -5.03 Total: 12.40 kcal Atomic # 16 Polarization: 0.32 SS G_CDS: -2.50 Total: -2.18 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -28.23 -6.90 -35.14 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396333837.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.350 kcal (2) G-P(sol) polarization free energy of solvation -28.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds