Wall clock time and date at job start Mon Mar 30 2020 06:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.36119 * 117.00015 * 2 1 4 4 C 1.33342 * 122.13582 * 359.71747 * 3 2 1 5 5 S 1.75486 * 110.65581 * 179.85610 * 4 3 2 6 6 C 1.76103 * 91.55939 * 0.33745 * 5 4 3 7 7 C 1.39112 * 130.37593 * 179.81503 * 6 5 4 8 8 C 1.39764 * 121.34117 * 180.02562 * 7 6 5 9 9 C 1.46947 * 119.67088 * 179.97438 * 8 7 6 10 10 O 1.21280 * 120.00336 * 180.02562 * 9 8 7 11 11 C 1.39465 * 120.66713 * 359.97438 * 8 7 6 12 12 C 1.39887 * 119.94467 * 359.97438 * 11 8 7 13 13 C 1.40690 * 120.28045 * 180.02562 * 12 11 8 14 14 H 1.07993 * 120.00239 * 206.69104 * 13 12 11 15 15 C 1.39927 * 119.99623 * 26.68912 * 13 12 11 16 16 N 1.30869 * 120.00362 * 14.81942 * 15 13 12 17 17 Si 1.86801 * 119.99338 * 194.82124 * 15 13 12 18 18 H 1.48495 * 109.47508 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47056 * 120.00020 * 17 15 13 20 20 H 1.48505 * 109.46964 * 239.99854 * 17 15 13 21 21 C 1.39947 * 122.13205 * 179.97438 * 3 2 1 22 22 H 1.08999 * 109.46787 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.46865 * 299.99946 * 1 2 3 24 24 H 1.09002 * 109.47086 * 59.99647 * 1 2 3 25 25 H 1.08001 * 124.67140 * 359.97438 * 4 3 2 26 26 H 1.08007 * 119.33530 * 359.97438 * 7 6 5 27 27 H 1.08010 * 119.99464 * 0.02562 * 9 8 7 28 28 H 1.08004 * 120.02526 * 179.97438 * 11 8 7 29 29 H 0.96994 * 120.00000 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0470 1.2128 0.0000 4 6 1.3630 2.3574 -0.0056 5 16 2.4549 3.7312 0.0003 6 6 3.8628 2.6733 0.0001 7 6 5.2199 2.9793 0.0002 8 6 6.1916 1.9746 -0.0005 9 6 7.6150 2.3395 -0.0010 10 8 8.4633 1.4726 -0.0020 11 6 5.8239 0.6293 -0.0007 12 6 4.4705 0.2754 0.0003 13 6 4.0916 -1.0795 0.0007 14 1 3.1412 -1.3746 -0.4187 15 6 4.9464 -2.0448 0.5444 16 7 5.9479 -1.6791 1.3032 17 14 4.6577 -3.8554 0.1870 18 1 3.4692 -4.0034 -0.6909 19 1 5.8494 -4.4216 -0.4945 20 1 4.4253 -4.5807 1.4619 21 6 3.4409 1.3380 0.0005 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.2854 2.4291 -0.0109 26 1 5.5290 4.0141 -0.0001 27 1 7.9059 3.3797 -0.0004 28 1 6.5834 -0.1385 -0.0016 29 1 6.5402 -2.3483 1.6804 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396333837.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:17 Heat of formation + Delta-G solvation = -51.896179 kcal Electronic energy + Delta-G solvation = -16935.695706 eV Core-core repulsion = 14107.877190 eV Total energy + Delta-G solvation = -2827.818517 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.78217 -39.97019 -38.41908 -36.03018 -34.50529 -31.90123 -30.02819 -28.42956 -27.39745 -25.36070 -23.32144 -22.34206 -20.83917 -19.65812 -18.29401 -17.58217 -17.28877 -16.77643 -16.61164 -16.52224 -15.83389 -15.12692 -14.95392 -14.89379 -14.56877 -14.00657 -13.65226 -13.38982 -13.14792 -12.95688 -12.65166 -12.42060 -12.23092 -12.01492 -11.93384 -11.40828 -11.29542 -11.03555 -10.58811 -9.84524 -9.21340 -8.85046 -8.27246 -6.38967 -0.36438 0.80940 0.92919 1.10239 1.31699 1.34406 1.47287 1.51387 2.03568 2.11938 2.61449 2.71571 3.49908 3.60465 4.12744 4.34000 4.38737 4.43731 4.61100 4.70746 4.73613 4.88866 4.98979 5.05221 5.19422 5.21488 5.61393 5.78527 5.85253 5.99352 6.43157 6.55061 6.65765 6.70720 6.76936 8.07794 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.013903 B = 0.010900 C = 0.006224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.447734 B = 2568.286879 C = 4497.433905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.320 6.320 3 C 0.159 3.841 4 C -0.374 4.374 5 S 0.081 5.919 6 C -0.092 4.092 7 C -0.182 4.182 8 C -0.146 4.146 9 C 0.393 3.607 10 O -0.510 6.510 11 C -0.156 4.156 12 C 0.113 3.887 13 C -0.433 4.433 14 H 0.096 0.904 15 C 0.027 3.973 16 N -0.798 5.798 17 Si 0.990 3.010 18 H -0.252 1.252 19 H -0.262 1.262 20 H -0.260 1.260 21 C -0.218 4.218 22 H 0.113 0.887 23 H 0.059 0.941 24 H 0.062 0.938 25 H 0.179 0.821 26 H 0.145 0.855 27 H 0.155 0.845 28 H 0.112 0.888 29 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.443 4.245 -1.633 7.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.234 6.234 3 C 0.104 3.896 4 C -0.507 4.507 5 S 0.339 5.661 6 C -0.206 4.206 7 C -0.208 4.208 8 C -0.150 4.150 9 C 0.256 3.744 10 O -0.386 6.386 11 C -0.178 4.178 12 C 0.108 3.892 13 C -0.460 4.460 14 H 0.114 0.886 15 C -0.191 4.191 16 N -0.421 5.421 17 Si 0.809 3.191 18 H -0.175 1.175 19 H -0.186 1.186 20 H -0.184 1.184 21 C -0.225 4.225 22 H 0.132 0.868 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.196 0.804 26 H 0.163 0.837 27 H 0.171 0.829 28 H 0.130 0.870 29 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.073 5.025 -1.470 8.018 hybrid contribution -0.215 -2.182 0.102 2.195 sum -6.288 2.844 -1.368 7.035 Atomic orbital electron populations 1.23267 0.77570 1.04897 1.01828 1.86235 1.22404 1.26154 1.88583 1.17669 0.90557 0.84917 0.96494 1.24686 1.03519 0.94419 1.28084 1.82987 0.93522 1.07171 1.82405 1.22321 0.98439 0.95047 1.04834 1.19977 0.88544 0.98568 1.13671 1.20772 0.96546 0.93930 1.03737 1.24686 0.86135 0.95735 0.67880 1.90460 1.54246 1.56568 1.37341 1.21442 0.95723 0.95113 1.05561 1.18715 0.90363 0.92265 0.87881 1.20111 1.03969 0.91467 1.30446 0.88642 1.27068 0.92935 1.07162 0.91981 1.69874 1.12521 1.39272 1.20411 0.85027 0.79977 0.74417 0.79684 1.17501 1.18636 1.18421 1.18909 0.91126 0.93726 1.18692 0.86836 0.92218 0.91943 0.80354 0.83689 0.82881 0.86995 0.89243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 9.91 113.37 1.12 1.65 15 2 O -0.32 -13.41 8.31 -94.91 -0.79 -14.20 15 3 C 0.16 7.05 6.63 21.58 0.14 7.19 15 4 C -0.37 -13.90 9.99 66.71 0.67 -13.24 15 5 S 0.08 2.88 23.29 -56.49 -1.32 1.56 15 6 C -0.09 -4.04 6.46 22.92 0.15 -3.89 15 7 C -0.18 -7.38 9.73 22.85 0.22 -7.16 15 8 C -0.15 -6.51 5.84 -20.33 -0.12 -6.63 15 9 C 0.39 14.63 11.42 70.10 0.80 15.43 15 10 O -0.51 -23.08 17.11 -3.03 -0.05 -23.14 15 11 C -0.16 -8.28 8.18 22.97 0.19 -8.09 15 12 C 0.11 6.14 5.74 -19.70 -0.11 6.02 15 13 C -0.43 -23.03 8.49 23.28 0.20 -22.83 15 14 H 0.10 4.99 6.25 -2.91 -0.02 4.97 15 15 C 0.03 1.33 5.18 85.25 0.44 1.78 15 16 N -0.80 -41.40 10.92 21.83 0.24 -41.16 15 17 Si 0.99 37.31 29.58 68.60 2.03 39.34 15 18 H -0.25 -9.23 7.11 99.48 0.71 -8.52 15 19 H -0.26 -9.52 7.11 99.48 0.71 -8.82 15 20 H -0.26 -9.28 7.11 99.48 0.71 -8.57 15 21 C -0.22 -10.86 6.03 -19.85 -0.12 -10.98 15 22 H 0.11 2.59 8.14 -2.39 -0.02 2.57 15 23 H 0.06 1.50 7.83 -2.39 -0.02 1.48 15 24 H 0.06 1.53 7.81 -2.39 -0.02 1.51 15 25 H 0.18 5.37 6.90 -2.91 -0.02 5.35 15 26 H 0.15 4.56 8.06 -2.91 -0.02 4.54 15 27 H 0.16 3.72 8.06 -2.91 -0.02 3.69 15 28 H 0.11 6.41 5.72 -2.91 -0.02 6.40 15 29 H 0.30 13.86 8.30 -92.71 -0.77 13.09 15 Total: -1.00 -65.52 271.19 4.88 -60.63 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: 1.19 Total: 17.70 kcal Atomic # 6 Polarization: -44.31 SS G_CDS: 3.58 Total: -40.73 kcal Atomic # 7 Polarization: -41.40 SS G_CDS: 0.24 Total: -41.16 kcal Atomic # 8 Polarization: -36.50 SS G_CDS: -0.84 Total: -37.34 kcal Atomic # 14 Polarization: 37.31 SS G_CDS: 2.03 Total: 39.34 kcal Atomic # 16 Polarization: 2.88 SS G_CDS: -1.32 Total: 1.56 kcal Total: -65.52 4.88 -60.63 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396333837.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.739 kcal (2) G-P(sol) polarization free energy of solvation -65.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds