Wall clock time and date at job start Mon Mar 30 2020 06:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35033 * 117.00099 * 2 1 4 4 S 1.70002 * 124.12332 * 359.97420 * 3 2 1 5 5 C 1.75821 * 93.19694 * 180.02562 * 4 3 2 6 6 C 1.39722 * 130.16643 * 179.97438 * 5 4 3 7 7 C 1.38157 * 121.52523 * 179.97438 * 6 5 4 8 8 C 1.37537 * 121.16678 * 0.02562 * 7 6 5 9 9 C 1.40489 * 119.88884 * 359.97438 * 8 7 6 10 10 C 1.40742 * 120.44538 * 180.02562 * 9 8 7 11 11 H 1.08000 * 120.00130 * 140.55040 * 10 9 8 12 12 C 1.39963 * 120.00102 * 320.55170 * 10 9 8 13 13 N 1.30852 * 119.99999 * 170.92327 * 12 10 9 14 14 Si 1.86797 * 119.99968 * 350.92326 * 12 10 9 15 15 H 1.48504 * 109.46940 * 86.14505 * 14 12 10 16 16 H 1.48494 * 109.47186 * 206.14735 * 14 12 10 17 17 H 1.48509 * 109.47183 * 326.14865 * 14 12 10 18 18 C 1.39183 * 110.16887 * 0.02562 * 5 4 3 19 19 C 1.37208 * 124.12102 * 180.30827 * 3 2 1 20 20 C 1.41160 * 123.32516 * 0.02562 * 19 3 2 21 21 O 1.21470 * 119.99527 * 354.72847 * 20 19 3 22 22 H 1.08998 * 109.47154 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47037 * 299.99957 * 1 2 3 24 24 H 1.09000 * 109.46779 * 60.00199 * 1 2 3 25 25 H 1.07996 * 119.23537 * 0.02562 * 6 5 4 26 26 H 1.08004 * 119.41454 * 180.02562 * 7 6 5 27 27 H 1.07998 * 120.06000 * 179.97438 * 8 7 6 28 28 H 0.97003 * 120.00286 * 180.02562 * 13 12 10 29 29 H 1.07993 * 120.00373 * 174.73038 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0421 1.2031 0.0000 4 16 1.2211 2.6918 -0.0006 5 6 2.7110 3.6254 -0.0010 6 6 2.9077 5.0087 -0.0021 7 6 4.1754 5.5581 -0.0017 8 6 5.2965 4.7613 -0.0007 9 6 5.1615 3.3629 0.0004 10 6 6.3007 2.5365 0.0019 11 1 6.3133 1.6353 0.5970 12 6 7.4173 2.8825 -0.7678 13 7 8.5364 2.2179 -0.6329 14 14 7.3101 4.2932 -1.9876 15 1 7.6013 5.5724 -1.2918 16 1 8.3002 4.0842 -3.0743 17 1 5.9434 4.3444 -2.5662 18 6 3.8114 2.7731 -0.0012 19 6 3.4036 1.3732 -0.0061 20 6 4.3193 0.2990 -0.0137 21 8 3.9165 -0.8430 0.0817 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 2.0490 5.6636 -0.0024 26 1 4.2880 6.6322 -0.0021 27 1 6.2789 5.2098 -0.0009 28 1 9.3104 2.4579 -1.1660 29 1 5.3779 0.4924 -0.1041 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396334710.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:11 Heat of formation + Delta-G solvation = -27.116668 kcal Electronic energy + Delta-G solvation = -17027.567950 eV Core-core repulsion = 14200.823954 eV Total energy + Delta-G solvation = -2826.743997 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.39811 -38.13893 -37.37918 -34.09134 -33.45234 -30.72975 -28.65119 -26.95634 -25.51453 -24.74723 -21.48750 -21.17217 -19.43438 -18.49276 -17.27443 -16.03969 -15.76636 -15.68829 -15.41868 -14.91106 -14.29504 -13.70213 -13.44561 -13.27353 -12.93581 -12.73520 -12.40402 -12.03139 -11.88613 -11.65367 -11.29092 -11.19421 -10.80786 -10.64662 -9.99961 -9.89680 -9.70079 -9.33234 -8.76316 -8.42467 -7.56644 -7.15295 -7.01348 -4.69774 1.23434 1.68400 2.20553 2.27871 2.38216 3.00086 3.09189 3.18945 3.41150 3.81800 3.85707 4.28797 5.02220 5.07157 5.13678 5.42960 5.62906 5.72913 5.81001 5.86855 6.26839 6.37862 6.50794 6.63347 6.82133 6.97996 7.12079 7.28688 7.38866 7.57768 7.65277 8.05003 8.30298 8.44743 8.48752 9.86340 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.022927 B = 0.008666 C = 0.006627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.949503 B = 3230.320820 C = 4223.875572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.254 6.254 3 C 0.033 3.967 4 S 0.080 5.920 5 C -0.105 4.105 6 C -0.207 4.207 7 C -0.052 4.052 8 C -0.247 4.247 9 C 0.129 3.871 10 C -0.438 4.438 11 H 0.105 0.895 12 C 0.084 3.916 13 N -0.796 5.796 14 Si 0.913 3.087 15 H -0.263 1.263 16 H -0.288 1.288 17 H -0.245 1.245 18 C -0.103 4.103 19 C -0.207 4.207 20 C 0.384 3.616 21 O -0.489 6.489 22 H 0.106 0.894 23 H 0.058 0.942 24 H 0.057 0.943 25 H 0.100 0.900 26 H 0.104 0.896 27 H 0.114 0.886 28 H 0.291 0.709 29 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.563 2.911 -0.774 10.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.166 6.166 3 C -0.131 4.131 4 S 0.342 5.658 5 C -0.219 4.219 6 C -0.232 4.232 7 C -0.073 4.073 8 C -0.268 4.268 9 C 0.124 3.876 10 C -0.466 4.466 11 H 0.122 0.878 12 C -0.137 4.137 13 N -0.419 5.419 14 Si 0.738 3.262 15 H -0.189 1.189 16 H -0.215 1.215 17 H -0.168 1.168 18 C -0.109 4.109 19 C -0.221 4.221 20 C 0.247 3.753 21 O -0.367 6.367 22 H 0.124 0.876 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.118 0.882 26 H 0.122 0.878 27 H 0.132 0.868 28 H 0.102 0.898 29 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.917 2.304 -0.768 11.183 hybrid contribution 1.244 0.484 -0.511 1.429 sum -9.673 2.788 -1.279 10.148 Atomic orbital electron populations 1.23273 0.78778 1.04504 1.01691 1.86032 1.20145 1.22780 1.87683 1.23248 0.95753 0.89413 1.04637 1.82528 1.09536 0.94609 1.79132 1.21921 0.93070 0.97702 1.09213 1.19558 0.96531 0.90447 1.16633 1.20378 0.92017 0.98002 0.96908 1.20952 0.97626 0.93173 1.15019 1.18362 0.89364 0.91580 0.88324 1.19511 0.95009 1.08706 1.23342 0.87752 1.26171 0.93527 0.96810 0.97209 1.69620 1.01532 1.36640 1.34108 0.86265 0.80132 0.80394 0.79377 1.18889 1.21494 1.16796 1.19693 0.93329 0.88503 1.09388 1.19526 0.90778 0.96163 1.15650 1.22806 0.95952 0.86142 0.70445 1.90473 1.83874 1.24994 1.37399 0.87559 0.92354 0.92397 0.88229 0.87777 0.86816 0.89831 0.86114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 10.19 101.05 1.03 1.21 15 2 O -0.25 -4.80 9.15 -36.19 -0.33 -5.13 15 3 C 0.03 0.66 6.99 30.36 0.21 0.88 15 4 S 0.08 1.39 21.42 -107.50 -2.30 -0.91 15 5 C -0.10 -2.18 6.43 -38.68 -0.25 -2.42 15 6 C -0.21 -4.03 10.02 -39.06 -0.39 -4.42 15 7 C -0.05 -1.02 9.95 -39.87 -0.40 -1.42 15 8 C -0.25 -5.39 7.18 -38.99 -0.28 -5.67 15 9 C 0.13 3.04 5.12 -104.41 -0.53 2.51 15 10 C -0.44 -10.76 8.05 -37.99 -0.31 -11.06 15 11 H 0.10 2.65 6.01 -52.49 -0.32 2.34 15 12 C 0.08 2.00 5.48 -17.32 -0.09 1.91 15 13 N -0.80 -19.52 13.93 55.55 0.77 -18.75 15 14 Si 0.91 19.17 24.63 -169.99 -4.19 14.98 15 15 H -0.26 -5.28 6.51 56.52 0.37 -4.91 15 16 H -0.29 -5.88 7.11 56.52 0.40 -5.47 15 17 H -0.24 -5.33 7.04 56.52 0.40 -4.93 15 18 C -0.10 -2.37 6.19 -102.82 -0.64 -3.00 15 19 C -0.21 -4.67 5.84 -106.14 -0.62 -5.29 15 20 C 0.38 8.86 10.73 31.84 0.34 9.20 15 21 O -0.49 -11.97 16.45 -13.99 -0.23 -12.20 15 22 H 0.11 1.06 8.14 -51.93 -0.42 0.63 15 23 H 0.06 0.66 7.97 -51.93 -0.41 0.25 15 24 H 0.06 0.65 7.97 -51.93 -0.41 0.24 15 25 H 0.10 1.67 8.06 -52.49 -0.42 1.25 15 26 H 0.10 1.70 8.06 -52.48 -0.42 1.27 15 27 H 0.11 2.42 5.15 -52.49 -0.27 2.15 15 28 H 0.29 6.47 8.30 -40.82 -0.34 6.14 15 29 H 0.12 2.79 4.76 -52.49 -0.25 2.54 15 LS Contribution 262.81 15.07 3.96 3.96 Total: -1.00 -27.81 262.81 -6.34 -34.15 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -2.10 Total: 1.49 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: -1.92 Total: -17.60 kcal Atomic # 7 Polarization: -19.52 SS G_CDS: 0.77 Total: -18.75 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.56 Total: -17.33 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -4.19 Total: 14.98 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -2.30 Total: -0.91 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -27.81 -6.34 -34.15 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396334710.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.038 kcal (2) G-P(sol) polarization free energy of solvation -27.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds