Wall clock time and date at job start Mon Mar 30 2020 06:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35033 * 117.00099 * 2 1 4 4 S 1.70002 * 124.12332 * 359.97420 * 3 2 1 5 5 C 1.75821 * 93.19694 * 180.02562 * 4 3 2 6 6 C 1.39722 * 130.16643 * 179.97438 * 5 4 3 7 7 C 1.38157 * 121.52523 * 179.97438 * 6 5 4 8 8 C 1.37537 * 121.16678 * 0.02562 * 7 6 5 9 9 C 1.40489 * 119.88884 * 359.97438 * 8 7 6 10 10 C 1.40742 * 120.44538 * 180.02562 * 9 8 7 11 11 H 1.08000 * 120.00130 * 140.55040 * 10 9 8 12 12 C 1.39963 * 120.00102 * 320.55170 * 10 9 8 13 13 N 1.30852 * 119.99999 * 170.92327 * 12 10 9 14 14 Si 1.86797 * 119.99968 * 350.92326 * 12 10 9 15 15 H 1.48504 * 109.46940 * 86.14505 * 14 12 10 16 16 H 1.48494 * 109.47186 * 206.14735 * 14 12 10 17 17 H 1.48509 * 109.47183 * 326.14865 * 14 12 10 18 18 C 1.39183 * 110.16887 * 0.02562 * 5 4 3 19 19 C 1.37208 * 124.12102 * 180.30827 * 3 2 1 20 20 C 1.41160 * 123.32516 * 0.02562 * 19 3 2 21 21 O 1.21470 * 119.99527 * 354.72847 * 20 19 3 22 22 H 1.08998 * 109.47154 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47037 * 299.99957 * 1 2 3 24 24 H 1.09000 * 109.46779 * 60.00199 * 1 2 3 25 25 H 1.07996 * 119.23537 * 0.02562 * 6 5 4 26 26 H 1.08004 * 119.41454 * 180.02562 * 7 6 5 27 27 H 1.07998 * 120.06000 * 179.97438 * 8 7 6 28 28 H 0.97003 * 120.00286 * 180.02562 * 13 12 10 29 29 H 1.07993 * 120.00373 * 174.73038 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0421 1.2031 0.0000 4 16 1.2211 2.6918 -0.0006 5 6 2.7110 3.6254 -0.0010 6 6 2.9077 5.0087 -0.0021 7 6 4.1754 5.5581 -0.0017 8 6 5.2965 4.7613 -0.0007 9 6 5.1615 3.3629 0.0004 10 6 6.3007 2.5365 0.0019 11 1 6.3133 1.6353 0.5970 12 6 7.4173 2.8825 -0.7678 13 7 8.5364 2.2179 -0.6329 14 14 7.3101 4.2932 -1.9876 15 1 7.6013 5.5724 -1.2918 16 1 8.3002 4.0842 -3.0743 17 1 5.9434 4.3444 -2.5662 18 6 3.8114 2.7731 -0.0012 19 6 3.4036 1.3732 -0.0061 20 6 4.3193 0.2990 -0.0137 21 8 3.9165 -0.8430 0.0817 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 2.0490 5.6636 -0.0024 26 1 4.2880 6.6322 -0.0021 27 1 6.2789 5.2098 -0.0009 28 1 9.3104 2.4579 -1.1660 29 1 5.3779 0.4924 -0.1041 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396334710.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:11 Heat of formation + Delta-G solvation = -43.279909 kcal Electronic energy + Delta-G solvation = -17028.268841 eV Core-core repulsion = 14200.823954 eV Total energy + Delta-G solvation = -2827.444887 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.00577 -39.68225 -39.11125 -35.78947 -35.08616 -32.41712 -30.14248 -28.23898 -27.22093 -26.36429 -23.13984 -22.80460 -21.09924 -20.10498 -18.84211 -17.64663 -17.31264 -17.12325 -17.06104 -16.48190 -15.94519 -15.36865 -15.11421 -14.80433 -14.60272 -14.22942 -14.08333 -13.56147 -13.27358 -13.14772 -12.80867 -12.70736 -12.40473 -12.15941 -11.69900 -11.53275 -11.24107 -10.97445 -10.54733 -10.06681 -9.10792 -8.87897 -8.63595 -6.48458 -0.40252 0.15306 0.51940 0.70783 0.71424 1.31464 1.42220 1.51676 2.05691 2.10600 2.14617 2.57808 3.30996 3.87916 4.13165 4.15628 4.19807 4.21976 4.29984 4.56795 4.73301 4.75357 4.89226 4.93760 5.16624 5.32189 5.53270 5.71651 5.87291 5.89373 6.02523 6.28802 6.59737 6.67495 6.72646 8.18447 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.022927 B = 0.008666 C = 0.006627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.949503 B = 3230.320820 C = 4223.875572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.002 4.002 2 O -0.277 6.277 3 C 0.050 3.950 4 S 0.193 5.807 5 C -0.143 4.143 6 C -0.185 4.185 7 C -0.059 4.059 8 C -0.251 4.251 9 C 0.105 3.895 10 C -0.471 4.471 11 H 0.073 0.927 12 C 0.050 3.950 13 N -0.844 5.844 14 Si 0.960 3.040 15 H -0.244 1.244 16 H -0.282 1.282 17 H -0.256 1.256 18 C -0.117 4.117 19 C -0.263 4.263 20 C 0.387 3.613 21 O -0.517 6.517 22 H 0.134 0.866 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.139 0.861 26 H 0.145 0.855 27 H 0.115 0.885 28 H 0.296 0.704 29 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.353 5.365 -1.160 14.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 O -0.189 6.189 3 C -0.116 4.116 4 S 0.454 5.546 5 C -0.257 4.257 6 C -0.209 4.209 7 C -0.079 4.079 8 C -0.272 4.272 9 C 0.101 3.899 10 C -0.500 4.500 11 H 0.091 0.909 12 C -0.165 4.165 13 N -0.470 5.470 14 Si 0.783 3.217 15 H -0.169 1.169 16 H -0.208 1.208 17 H -0.180 1.180 18 C -0.123 4.123 19 C -0.276 4.276 20 C 0.253 3.747 21 O -0.399 6.399 22 H 0.152 0.848 23 H 0.096 0.904 24 H 0.096 0.904 25 H 0.157 0.843 26 H 0.163 0.837 27 H 0.133 0.867 28 H 0.107 0.893 29 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -14.722 4.776 -1.144 15.520 hybrid contribution 1.951 -0.286 -0.318 1.998 sum -12.771 4.490 -1.462 13.616 Atomic orbital electron populations 1.23796 0.75193 1.07231 1.03484 1.86037 1.23802 1.22599 1.86480 1.23676 0.95887 0.91599 1.00400 1.82048 1.05272 0.90424 1.76826 1.22424 0.94831 0.98681 1.09742 1.20107 0.97839 0.90285 1.12677 1.20830 0.91275 0.99935 0.95888 1.21144 0.98885 0.92631 1.14584 1.18550 0.89540 0.92536 0.89311 1.19412 0.96684 1.08705 1.25182 0.90897 1.26768 0.93022 0.98579 0.98128 1.69663 1.02375 1.38799 1.36149 0.85558 0.79344 0.78941 0.77833 1.16856 1.20821 1.17984 1.19849 0.93962 0.89174 1.09333 1.19467 0.92099 0.95885 1.20176 1.22667 0.95943 0.86347 0.69780 1.90431 1.84067 1.25688 1.39680 0.84755 0.90429 0.90427 0.84342 0.83743 0.86734 0.89346 0.87528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.05 10.19 113.37 1.16 1.11 15 2 O -0.28 -9.87 9.15 -64.52 -0.59 -10.46 15 3 C 0.05 1.91 6.99 67.58 0.47 2.39 15 4 S 0.19 5.82 21.42 -56.49 -1.21 4.61 15 5 C -0.14 -5.47 6.43 22.86 0.15 -5.33 15 6 C -0.19 -6.33 10.02 22.61 0.23 -6.11 15 7 C -0.06 -2.08 9.95 22.08 0.22 -1.86 15 8 C -0.25 -10.71 7.18 22.65 0.16 -10.55 15 9 C 0.11 5.08 5.12 -19.72 -0.10 4.98 15 10 C -0.47 -24.76 8.05 23.30 0.19 -24.57 15 11 H 0.07 4.14 6.01 -2.91 -0.02 4.12 15 12 C 0.05 2.55 5.48 85.26 0.47 3.02 15 13 N -0.84 -44.22 13.93 21.83 0.30 -43.92 15 14 Si 0.96 40.03 24.63 68.60 1.69 41.72 15 15 H -0.24 -9.28 6.51 99.48 0.65 -8.63 15 16 H -0.28 -11.25 7.11 99.48 0.71 -10.54 15 17 H -0.26 -10.97 7.04 99.48 0.70 -10.27 15 18 C -0.12 -5.38 6.19 -18.70 -0.12 -5.49 15 19 C -0.26 -12.02 5.84 -20.85 -0.12 -12.15 15 20 C 0.39 19.04 10.73 68.54 0.74 19.78 15 21 O -0.52 -26.60 16.45 14.91 0.25 -26.35 15 22 H 0.13 2.12 8.14 -2.39 -0.02 2.10 15 23 H 0.08 1.37 7.97 -2.39 -0.02 1.35 15 24 H 0.08 1.37 7.97 -2.39 -0.02 1.35 15 25 H 0.14 3.68 8.06 -2.91 -0.02 3.66 15 26 H 0.14 3.92 8.06 -2.91 -0.02 3.90 15 27 H 0.11 4.77 5.15 -2.91 -0.01 4.76 15 28 H 0.30 13.99 8.30 -92.71 -0.77 13.22 15 29 H 0.11 5.50 4.76 -2.91 -0.01 5.49 15 Total: -1.00 -63.71 262.81 5.01 -58.70 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 1.14 Total: 10.50 kcal Atomic # 6 Polarization: -38.23 SS G_CDS: 3.44 Total: -34.80 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: 0.30 Total: -43.92 kcal Atomic # 8 Polarization: -36.47 SS G_CDS: -0.35 Total: -36.81 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 1.69 Total: 41.72 kcal Atomic # 16 Polarization: 5.82 SS G_CDS: -1.21 Total: 4.61 kcal Total: -63.71 5.01 -58.70 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396334710.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.418 kcal (2) G-P(sol) polarization free energy of solvation -63.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds