Wall clock time and date at job start Mon Mar 30 2020 06:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35654 * 116.99941 * 2 1 4 4 C 1.37859 * 119.74373 * 359.97438 * 3 2 1 5 5 C 1.39566 * 120.52076 * 180.02562 * 4 3 2 6 6 C 1.46386 * 119.98723 * 180.25378 * 5 4 3 7 7 O 1.21384 * 119.99525 * 179.72198 * 6 5 4 8 8 C 1.47538 * 120.01682 * 359.97438 * 5 4 3 9 9 C 1.40541 * 129.01676 * 180.02562 * 8 5 4 10 10 C 1.32257 * 115.82631 * 179.97438 * 9 8 5 11 11 S 1.75516 * 110.66247 * 359.97438 * 10 9 8 12 12 C 1.39202 * 118.39112 * 359.97438 * 8 5 4 13 13 C 1.41171 * 119.74675 * 179.97438 * 3 2 1 14 14 C 1.40231 * 119.69989 * 359.97438 * 13 3 2 15 15 H 1.08002 * 119.99727 * 320.93057 * 14 13 3 16 16 C 1.40399 * 119.99947 * 140.92133 * 14 13 3 17 17 N 1.30588 * 120.00567 * 338.80787 * 16 14 13 18 18 Si 1.86809 * 119.99843 * 158.80688 * 16 14 13 19 19 H 1.48499 * 109.47007 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46861 * 120.00189 * 18 16 14 21 21 H 1.48495 * 109.47096 * 240.00153 * 18 16 14 22 22 H 1.08998 * 109.47151 * 60.00431 * 1 2 3 23 23 H 1.09009 * 109.46838 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47664 * 299.99825 * 1 2 3 25 25 H 1.07998 * 119.73711 * 0.04840 * 4 3 2 26 26 H 1.08000 * 120.00191 * 359.73274 * 6 5 4 27 27 H 1.07999 * 122.08925 * 359.94487 * 9 8 5 28 28 H 1.07999 * 124.67012 * 179.97438 * 10 9 8 29 29 H 0.96999 * 120.00583 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2888 2.3615 -0.0005 5 6 1.9055 3.6135 -0.0011 6 6 1.0914 4.8301 0.0040 7 8 1.6276 5.9191 0.0086 8 6 3.3776 3.7112 -0.0005 9 6 4.1882 4.8593 -0.0004 10 6 5.4930 4.6434 0.0007 11 16 5.8359 2.9220 0.0024 12 6 4.1191 2.5331 0.0011 13 6 3.4549 1.2764 0.0005 14 6 4.2073 0.0930 0.0016 15 1 3.8839 -0.7519 0.5916 16 6 5.3807 0.0065 -0.7643 17 7 5.5648 0.8177 -1.7710 18 14 6.6790 -1.2691 -0.3434 19 1 6.2331 -2.0599 0.8318 20 1 6.8767 -2.1754 -1.5031 21 1 7.9586 -0.5865 -0.0247 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0278 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 0.2109 2.2952 -0.0002 26 1 0.0137 4.7588 0.0038 27 1 3.7716 5.8557 -0.0017 28 1 6.2441 5.4194 0.0005 29 1 6.3754 0.7577 -2.3004 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396335456.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:35 Heat of formation + Delta-G solvation = -48.358960 kcal Electronic energy + Delta-G solvation = -17146.980213 eV Core-core repulsion = 14319.315081 eV Total energy + Delta-G solvation = -2827.665132 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.68745 -39.44391 -38.19239 -36.35064 -34.64683 -32.24312 -29.37735 -28.11716 -27.69377 -24.72201 -23.81809 -21.92649 -20.91094 -19.67052 -18.48031 -17.44990 -17.17874 -17.02454 -16.21821 -15.90243 -15.66930 -15.31646 -14.93143 -14.90574 -14.34921 -14.11767 -13.77875 -13.48584 -13.02058 -12.91229 -12.60570 -12.55672 -12.23976 -12.16013 -11.72722 -11.52970 -11.04131 -10.74827 -10.25710 -10.06021 -8.99828 -8.79678 -8.11184 -6.43797 -0.29754 0.59274 1.08844 1.31130 1.37209 1.50603 1.58941 1.71588 1.89701 2.14191 2.68355 2.93484 3.37935 3.79212 4.02532 4.36271 4.47873 4.57693 4.62091 4.67730 4.83126 4.90241 4.95737 5.07098 5.21577 5.33174 5.48947 5.65402 5.83811 6.05143 6.16692 6.43578 6.58393 6.92558 7.12679 8.07618 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.017886 B = 0.010513 C = 0.006865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.091043 B = 2662.792647 C = 4077.486917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.334 6.334 3 C -0.015 4.015 4 C -0.094 4.094 5 C -0.293 4.293 6 C 0.388 3.612 7 O -0.536 6.536 8 C -0.041 4.041 9 C -0.143 4.143 10 C -0.221 4.221 11 S 0.108 5.892 12 C -0.197 4.197 13 C 0.126 3.874 14 C -0.454 4.454 15 H 0.088 0.912 16 C 0.037 3.963 17 N -0.771 5.771 18 Si 0.965 3.035 19 H -0.255 1.255 20 H -0.260 1.260 21 H -0.256 1.256 22 H 0.054 0.946 23 H 0.110 0.890 24 H 0.059 0.941 25 H 0.154 0.846 26 H 0.133 0.867 27 H 0.140 0.860 28 H 0.184 0.816 29 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.222 -1.078 1.807 3.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.250 6.250 3 C -0.063 4.063 4 C -0.114 4.114 5 C -0.298 4.298 6 C 0.257 3.743 7 O -0.418 6.418 8 C -0.050 4.050 9 C -0.174 4.174 10 C -0.356 4.356 11 S 0.374 5.626 12 C -0.314 4.314 13 C 0.120 3.880 14 C -0.481 4.481 15 H 0.106 0.894 16 C -0.185 4.185 17 N -0.395 5.395 18 Si 0.784 3.216 19 H -0.178 1.178 20 H -0.184 1.184 21 H -0.180 1.180 22 H 0.072 0.928 23 H 0.129 0.871 24 H 0.077 0.923 25 H 0.171 0.829 26 H 0.149 0.851 27 H 0.158 0.842 28 H 0.201 0.799 29 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.314 -1.456 1.603 2.533 hybrid contribution -0.960 0.349 -0.131 1.030 sum -2.274 -1.107 1.472 2.926 Atomic orbital electron populations 1.23159 0.78260 1.04481 1.01362 1.85925 1.21662 1.26885 1.90499 1.18714 0.91361 0.84426 1.11776 1.21053 0.99688 0.90456 1.00161 1.20982 0.90755 0.95434 1.22640 1.23881 0.95364 0.85699 0.69403 1.90373 1.78151 1.31864 1.41419 1.19458 0.94091 0.91553 0.99905 1.20163 0.92957 0.99417 1.04868 1.25830 0.99866 1.01394 1.08502 1.83499 1.05097 0.97760 1.76275 1.22589 0.96134 0.95996 1.16661 1.16598 0.89535 0.91640 0.90276 1.19729 1.05690 0.99524 1.23113 0.89392 1.26741 0.99746 0.98942 0.93028 1.69705 1.26599 1.32497 1.10663 0.85363 0.77706 0.78388 0.80101 1.17825 1.18402 1.18003 0.92751 0.87127 0.92284 0.82901 0.85088 0.84215 0.79882 0.88697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 9.80 113.37 1.11 1.73 15 2 O -0.33 -14.14 9.84 -89.70 -0.88 -15.02 15 3 C -0.02 -0.71 6.69 22.90 0.15 -0.56 15 4 C -0.09 -3.78 8.70 22.50 0.20 -3.59 15 5 C -0.29 -12.76 6.08 -18.38 -0.11 -12.87 15 6 C 0.39 14.34 11.42 69.94 0.80 15.14 15 7 O -0.54 -23.01 15.21 -3.35 -0.05 -23.07 15 8 C -0.04 -2.01 6.01 -20.03 -0.12 -2.13 15 9 C -0.14 -6.46 9.43 21.78 0.21 -6.25 15 10 C -0.22 -9.06 11.09 66.77 0.74 -8.32 15 11 S 0.11 4.90 19.90 -56.49 -1.12 3.78 15 12 C -0.20 -10.11 5.72 23.47 0.13 -9.97 15 13 C 0.13 6.57 5.38 -21.11 -0.11 6.46 15 14 C -0.45 -23.24 8.37 23.28 0.19 -23.05 15 15 H 0.09 4.47 7.89 -2.91 -0.02 4.45 15 16 C 0.04 1.73 4.22 85.40 0.36 2.09 15 17 N -0.77 -37.56 10.70 21.90 0.23 -37.33 15 18 Si 0.96 35.76 29.61 68.60 2.03 37.79 15 19 H -0.25 -9.36 7.11 99.48 0.71 -8.65 15 20 H -0.26 -9.13 7.11 99.48 0.71 -8.43 15 21 H -0.26 -9.08 7.11 99.48 0.71 -8.37 15 22 H 0.05 1.39 7.63 -2.39 -0.02 1.37 15 23 H 0.11 2.47 8.14 -2.38 -0.02 2.45 15 24 H 0.06 1.44 7.63 -2.39 -0.02 1.42 15 25 H 0.15 4.64 6.20 -2.91 -0.02 4.62 15 26 H 0.13 3.38 8.06 -2.91 -0.02 3.36 15 27 H 0.14 6.19 6.22 -2.91 -0.02 6.17 15 28 H 0.18 5.94 8.06 -2.91 -0.02 5.91 15 29 H 0.30 13.18 8.29 -92.71 -0.77 12.41 15 Total: -1.00 -63.40 267.60 4.95 -58.45 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 1.19 Total: 16.71 kcal Atomic # 6 Polarization: -44.87 SS G_CDS: 3.55 Total: -41.32 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.23 Total: -37.33 kcal Atomic # 8 Polarization: -37.15 SS G_CDS: -0.93 Total: -38.09 kcal Atomic # 14 Polarization: 35.76 SS G_CDS: 2.03 Total: 37.79 kcal Atomic # 16 Polarization: 4.90 SS G_CDS: -1.12 Total: 3.78 kcal Total: -63.40 4.95 -58.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396335456.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.096 kcal (2) G-P(sol) polarization free energy of solvation -63.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds