Wall clock time and date at job start Mon Mar 30 2020 06:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35769 * 117.00275 * 2 1 4 4 C 1.36142 * 119.98021 * 359.97438 * 3 2 1 5 5 C 1.41061 * 120.73586 * 179.97438 * 4 3 2 6 6 C 1.46251 * 129.28450 * 179.97438 * 5 4 3 7 7 C 1.41706 * 123.16402 * 0.02562 * 6 5 4 8 8 O 1.21410 * 120.00104 * 0.02562 * 7 6 5 9 9 C 1.35834 * 113.66899 * 180.02562 * 6 5 4 10 10 S 1.69965 * 112.10007 * 359.97438 * 9 6 5 11 11 C 1.40007 * 119.65244 * 359.97438 * 5 4 3 12 12 C 1.38991 * 119.89400 * 359.74803 * 11 5 4 13 13 C 1.40299 * 120.09416 * 0.53011 * 12 11 5 14 14 C 1.40936 * 120.20557 * 179.72047 * 13 12 11 15 15 H 1.07998 * 120.00393 * 154.17038 * 14 13 12 16 16 C 1.39907 * 120.00205 * 334.17368 * 14 13 12 17 17 N 1.30898 * 119.99860 * 334.41675 * 16 14 13 18 18 Si 1.86801 * 120.00427 * 154.41110 * 16 14 13 19 19 H 1.48495 * 109.47345 * 180.02562 * 18 16 14 20 20 H 1.48504 * 109.46891 * 300.00201 * 18 16 14 21 21 H 1.48496 * 109.47027 * 59.99873 * 18 16 14 22 22 H 1.09005 * 109.46860 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47267 * 299.99661 * 1 2 3 24 24 H 1.09001 * 109.47754 * 59.99889 * 1 2 3 25 25 H 1.08001 * 119.63411 * 359.97438 * 4 3 2 26 26 H 1.08000 * 119.99699 * 180.02562 * 7 6 5 27 27 H 1.08001 * 123.94684 * 179.97438 * 9 6 5 28 28 H 1.08003 * 119.95328 * 180.27174 * 12 11 5 29 29 H 0.97005 * 119.99897 * 354.23434 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 1.3035 2.3512 -0.0005 5 6 1.9274 3.6164 0.0000 6 6 1.3216 4.9476 -0.0009 7 6 -0.0792 5.1618 -0.0021 8 8 -0.8382 4.2142 -0.0019 9 6 2.2281 5.9592 -0.0006 10 16 3.8276 5.3845 0.0016 11 6 3.3250 3.6996 0.0016 12 6 4.0880 2.5379 0.0080 13 6 3.4598 1.2835 0.0016 14 6 4.2312 0.1040 0.0021 15 1 3.8204 -0.8099 0.4051 16 6 5.5294 0.1170 -0.5195 17 7 5.8618 1.0011 -1.4258 18 14 6.7884 -1.1272 0.0775 19 1 8.0774 -0.9030 -0.6249 20 1 6.9879 -0.9666 1.5403 21 1 6.3010 -2.5005 -0.2077 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3635 0.5138 -0.8899 25 1 0.2254 2.2875 -0.0014 26 1 -0.4715 6.1680 -0.0031 27 1 1.9633 7.0062 -0.0015 28 1 5.1662 2.6009 0.0137 29 1 5.1880 1.5922 -1.7967 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396336005.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:58 Heat of formation + Delta-G solvation = -60.136228 kcal Electronic energy + Delta-G solvation = -16948.906917 eV Core-core repulsion = 14120.731085 eV Total energy + Delta-G solvation = -2828.175832 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.09834 -39.98372 -38.36630 -36.73196 -34.47016 -31.04273 -30.87843 -28.19005 -26.99510 -26.36712 -23.40227 -22.78894 -20.74668 -20.17716 -18.34451 -18.00210 -17.58389 -16.77606 -16.53785 -16.14690 -15.57562 -15.53445 -15.38225 -14.87342 -14.57223 -14.14965 -13.84329 -13.55699 -13.28476 -12.82894 -12.77964 -12.54163 -12.36690 -11.96742 -11.58312 -11.55544 -11.28371 -10.87448 -10.57534 -10.24773 -9.42615 -9.18446 -8.47992 -6.43176 -0.37010 0.58241 0.71365 0.76311 1.17322 1.50610 1.56897 1.80906 2.12238 2.30447 2.60369 2.63782 3.30485 3.62267 3.91070 4.16158 4.30989 4.31748 4.51274 4.58512 4.62018 4.71116 4.85556 5.03172 5.10344 5.30551 5.48510 5.59653 5.67062 5.96551 6.02610 6.28614 6.64755 6.73592 6.87591 7.93217 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.020627 B = 0.007939 C = 0.005869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.112565 B = 3525.975368 C = 4769.353531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.331 6.331 3 C 0.040 3.960 4 C -0.161 4.161 5 C -0.151 4.151 6 C -0.209 4.209 7 C 0.402 3.598 8 O -0.516 6.516 9 C -0.174 4.174 10 S 0.167 5.833 11 C -0.147 4.147 12 C -0.217 4.217 13 C 0.065 3.935 14 C -0.516 4.516 15 H 0.077 0.923 16 C 0.004 3.996 17 N -0.802 5.802 18 Si 1.118 2.882 19 H -0.267 1.267 20 H -0.262 1.262 21 H -0.258 1.258 22 H 0.123 0.877 23 H 0.049 0.951 24 H 0.046 0.954 25 H 0.130 0.870 26 H 0.157 0.843 27 H 0.221 0.779 28 H 0.103 0.897 29 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.433 7.580 2.270 9.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.246 6.246 3 C -0.005 4.005 4 C -0.182 4.182 5 C -0.157 4.157 6 C -0.225 4.225 7 C 0.264 3.736 8 O -0.395 6.395 9 C -0.311 4.311 10 S 0.433 5.567 11 C -0.261 4.261 12 C -0.242 4.242 13 C 0.059 3.941 14 C -0.544 4.544 15 H 0.095 0.905 16 C -0.213 4.213 17 N -0.425 5.425 18 Si 0.934 3.066 19 H -0.191 1.191 20 H -0.186 1.186 21 H -0.182 1.182 22 H 0.141 0.859 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.148 0.852 26 H 0.173 0.827 27 H 0.238 0.762 28 H 0.121 0.879 29 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.785 7.277 2.068 7.772 hybrid contribution -3.200 -0.210 -0.035 3.207 sum -4.984 7.066 2.033 8.883 Atomic orbital electron populations 1.23123 0.78174 1.04660 1.00842 1.85969 1.21789 1.27216 1.89632 1.18987 0.92393 0.84219 1.04915 1.20600 0.99479 0.90822 1.07297 1.18654 0.91158 0.93085 1.12772 1.20077 0.98479 0.91287 1.12630 1.22983 0.86027 0.95584 0.69043 1.90463 1.61726 1.49012 1.38284 1.25795 0.97018 1.04656 1.03600 1.82364 1.05324 0.94509 1.74475 1.22631 0.96711 0.98514 1.08293 1.19989 0.97478 0.89523 1.17256 1.17316 0.89003 0.94141 0.93601 1.20617 1.00842 0.96895 1.36041 0.90524 1.28553 1.00447 1.00244 0.92048 1.70592 1.39173 1.15134 1.17574 0.83004 0.73045 0.73265 0.77298 1.19127 1.18644 1.18249 0.85902 0.93252 0.93533 0.85205 0.82725 0.76230 0.87928 0.90330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.96 9.80 113.37 1.11 2.07 15 2 O -0.33 -16.01 9.77 -90.96 -0.89 -16.90 15 3 C 0.04 2.09 6.66 22.62 0.15 2.24 15 4 C -0.16 -7.85 8.49 22.47 0.19 -7.66 15 5 C -0.15 -6.94 6.03 -20.07 -0.12 -7.06 15 6 C -0.21 -7.23 5.83 -20.90 -0.12 -7.36 15 7 C 0.40 11.76 11.29 68.68 0.78 12.54 15 8 O -0.52 -19.61 15.50 -3.43 -0.05 -19.67 15 9 C -0.17 -4.71 10.65 67.26 0.72 -4.00 15 10 S 0.17 5.56 22.97 -56.49 -1.30 4.27 15 11 C -0.15 -6.85 6.42 22.88 0.15 -6.70 15 12 C -0.22 -11.45 7.98 22.95 0.18 -11.27 15 13 C 0.07 3.62 5.29 -21.28 -0.11 3.51 15 14 C -0.52 -28.44 8.62 23.34 0.20 -28.24 15 15 H 0.08 4.22 7.71 -2.91 -0.02 4.20 15 16 C 0.00 0.22 4.92 85.24 0.42 0.63 15 17 N -0.80 -43.13 12.33 21.82 0.27 -42.86 15 18 Si 1.12 42.89 30.00 68.60 2.06 44.95 15 19 H -0.27 -9.91 7.11 99.48 0.71 -9.21 15 20 H -0.26 -9.51 7.11 99.48 0.71 -8.80 15 21 H -0.26 -9.18 7.11 99.48 0.71 -8.48 15 22 H 0.12 3.42 8.14 -2.38 -0.02 3.40 15 23 H 0.05 1.71 7.64 -2.39 -0.02 1.69 15 24 H 0.05 1.64 7.64 -2.39 -0.02 1.62 15 25 H 0.13 6.01 4.44 -2.91 -0.01 6.00 15 26 H 0.16 2.49 8.06 -2.91 -0.02 2.47 15 27 H 0.22 3.30 8.06 -2.91 -0.02 3.28 15 28 H 0.10 5.58 6.49 -2.91 -0.02 5.56 15 29 H 0.28 16.06 6.72 -92.70 -0.62 15.43 15 Total: -1.00 -69.32 268.77 4.97 -64.35 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: 1.34 Total: 17.16 kcal Atomic # 6 Polarization: -54.83 SS G_CDS: 3.54 Total: -51.29 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: 0.27 Total: -42.86 kcal Atomic # 8 Polarization: -35.62 SS G_CDS: -0.94 Total: -36.57 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.06 Total: 44.95 kcal Atomic # 16 Polarization: 5.56 SS G_CDS: -1.30 Total: 4.27 kcal Total: -69.32 4.97 -64.35 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396336005.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.212 kcal (2) G-P(sol) polarization free energy of solvation -69.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds