Wall clock time and date at job start Mon Mar 30 2020 06:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35499 * 117.00124 * 2 1 4 4 C 1.36053 * 122.94894 * 90.02360 * 3 2 1 5 5 C 1.40819 * 124.54646 * 359.94539 * 4 3 2 6 6 O 1.21494 * 120.00254 * 180.02562 * 5 4 3 7 7 S 1.75257 * 110.91442 * 179.97438 * 4 3 2 8 8 C 1.75858 * 92.46221 * 0.02562 * 7 4 3 9 9 C 1.39634 * 110.34751 * 359.97438 * 8 7 4 10 10 C 1.41535 * 119.00502 * 179.97438 * 9 8 7 11 11 C 1.37700 * 120.93829 * 359.97438 * 10 9 8 12 12 C 1.37948 * 120.75974 * 359.68897 * 11 10 9 13 13 C 1.40327 * 119.94078 * 0.61986 * 12 11 10 14 14 C 1.40878 * 120.08146 * 179.67347 * 13 12 11 15 15 H 1.07994 * 119.99863 * 154.10920 * 14 13 12 16 16 C 1.39934 * 119.99804 * 333.82599 * 14 13 12 17 17 N 1.30870 * 120.00062 * 343.28755 * 16 14 13 18 18 Si 1.86794 * 119.99618 * 163.28415 * 16 14 13 19 19 H 1.48505 * 109.47282 * 90.00453 * 18 16 14 20 20 H 1.48506 * 109.47241 * 210.00132 * 18 16 14 21 21 H 1.48501 * 109.47469 * 330.00373 * 18 16 14 22 22 H 1.09004 * 109.47023 * 300.00175 * 1 2 3 23 23 H 1.09000 * 109.47249 * 60.00249 * 1 2 3 24 24 H 1.09002 * 109.47111 * 180.02562 * 1 2 3 25 25 H 1.08005 * 119.99756 * 0.02562 * 5 4 3 26 26 H 1.08003 * 119.52598 * 180.02562 * 10 9 8 27 27 H 1.07995 * 119.62211 * 179.97438 * 11 10 9 28 28 H 1.08001 * 120.03381 * 180.28887 * 12 11 10 29 29 H 0.96993 * 119.99676 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2073 0.0000 4 6 2.3805 1.8664 1.1417 5 6 2.1353 1.3864 2.4427 6 8 2.4711 2.0453 3.4066 7 16 3.1592 3.3933 0.7763 8 6 3.0254 3.1333 -0.9578 9 6 2.4024 1.9112 -1.2189 10 6 2.2001 1.5174 -2.5632 11 6 2.6073 2.3204 -3.6051 12 6 3.2179 3.5336 -3.3638 13 6 3.4415 3.9550 -2.0441 14 6 4.0710 5.1903 -1.7944 15 1 3.8854 5.7134 -0.8680 16 6 4.9414 5.7366 -2.7442 17 7 5.4282 4.9821 -3.6962 18 14 5.4084 7.5430 -2.6531 19 1 6.6241 7.6983 -1.8144 20 1 5.6821 8.0531 -4.0206 21 1 4.2905 8.3136 -2.0518 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.6487 0.4325 2.5835 26 1 1.7187 0.5740 -2.7747 27 1 2.4427 1.9988 -4.6228 28 1 3.5284 4.1562 -4.1898 29 1 6.0312 5.3609 -4.3547 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396336515.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:45 Heat of formation + Delta-G solvation = -37.436997 kcal Electronic energy + Delta-G solvation = -16713.851332 eV Core-core repulsion = 13886.659812 eV Total energy + Delta-G solvation = -2827.191520 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.45719 -38.27978 -37.33928 -34.30716 -32.88063 -30.14260 -29.10034 -27.20474 -25.55844 -23.88961 -21.89002 -20.62601 -19.92253 -17.88802 -16.91944 -16.50060 -15.64515 -15.41088 -15.21298 -14.78103 -14.32482 -13.86720 -13.62101 -13.56400 -12.85152 -12.66446 -12.34996 -11.80272 -11.67001 -11.29583 -11.14848 -10.80308 -10.64048 -10.32410 -10.01202 -9.90445 -9.48303 -9.46436 -9.39476 -8.38326 -7.60171 -7.06786 -6.82488 -4.59666 0.72193 2.27421 2.48088 2.61558 2.94858 2.95525 2.96525 3.02947 3.25124 3.75609 4.06645 4.38831 4.83316 5.25344 5.31913 5.37211 5.45581 5.65946 5.91949 6.06898 6.13673 6.27104 6.63347 6.75529 6.90436 7.04285 7.27711 7.58318 7.62082 7.70190 7.80084 7.89779 8.27997 8.51422 8.56388 9.90004 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.024658 B = 0.007115 C = 0.005681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.269149 B = 3934.461497 C = 4927.550023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.324 6.324 3 C 0.174 3.826 4 C -0.340 4.340 5 C 0.411 3.589 6 O -0.478 6.478 7 S 0.148 5.852 8 C -0.191 4.191 9 C -0.080 4.080 10 C -0.199 4.199 11 C -0.085 4.085 12 C -0.160 4.160 13 C 0.139 3.861 14 C -0.451 4.451 15 H 0.083 0.917 16 C 0.077 3.923 17 N -0.779 5.779 18 Si 0.912 3.088 19 H -0.266 1.266 20 H -0.273 1.273 21 H -0.257 1.257 22 H 0.045 0.955 23 H 0.052 0.948 24 H 0.094 0.906 25 H 0.100 0.900 26 H 0.097 0.903 27 H 0.099 0.901 28 H 0.127 0.873 29 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.057 -4.100 1.685 7.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.241 6.241 3 C 0.111 3.889 4 C -0.456 4.456 5 C 0.273 3.727 6 O -0.355 6.355 7 S 0.417 5.583 8 C -0.307 4.307 9 C -0.086 4.086 10 C -0.222 4.222 11 C -0.104 4.104 12 C -0.184 4.184 13 C 0.133 3.867 14 C -0.479 4.479 15 H 0.101 0.899 16 C -0.143 4.143 17 N -0.402 5.402 18 Si 0.736 3.264 19 H -0.191 1.191 20 H -0.197 1.197 21 H -0.181 1.181 22 H 0.063 0.937 23 H 0.071 0.929 24 H 0.112 0.888 25 H 0.116 0.884 26 H 0.115 0.885 27 H 0.117 0.883 28 H 0.145 0.855 29 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.014 -2.737 2.994 6.449 hybrid contribution -0.407 -0.422 -1.160 1.300 sum -5.421 -3.159 1.833 6.537 Atomic orbital electron populations 1.23046 0.78696 1.03005 1.01111 1.85819 1.19813 1.24266 1.94162 1.19440 0.94126 0.84642 0.90723 1.24048 1.17907 1.04717 0.98974 1.21517 0.75836 0.89722 0.85670 1.90564 1.42821 1.58823 1.43320 1.83784 1.61674 1.13729 0.99066 1.22924 1.12110 0.99247 0.96430 1.18868 1.02882 0.93964 0.92884 1.20143 1.11125 1.01104 0.89829 1.20554 0.97991 0.95057 0.96828 1.21204 1.03549 0.97166 0.96492 1.17009 0.89284 0.91221 0.89155 1.19524 1.21729 1.03167 1.03463 0.89899 1.25934 0.94174 1.00323 0.93856 1.69810 1.21810 1.36944 1.11652 0.86222 0.80002 0.81415 0.78805 1.19087 1.19743 1.18094 0.93681 0.92945 0.88772 0.88388 0.88458 0.88299 0.85519 0.90243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 11.13 101.05 1.12 1.57 15 2 O -0.32 -5.40 10.11 -18.19 -0.18 -5.59 15 3 C 0.17 3.42 6.01 -37.59 -0.23 3.19 15 4 C -0.34 -6.65 6.14 -39.39 -0.24 -6.90 15 5 C 0.41 7.10 11.13 31.71 0.35 7.45 15 6 O -0.48 -9.52 17.58 5.37 0.09 -9.43 15 7 S 0.15 3.22 22.38 -107.50 -2.41 0.82 15 8 C -0.19 -4.56 6.36 -37.45 -0.24 -4.80 15 9 C -0.08 -1.78 6.02 -105.34 -0.63 -2.42 15 10 C -0.20 -4.24 10.08 -38.52 -0.39 -4.63 15 11 C -0.09 -1.84 9.97 -39.88 -0.40 -2.24 15 12 C -0.16 -3.85 8.66 -38.90 -0.34 -4.19 15 13 C 0.14 3.51 5.58 -106.50 -0.59 2.91 15 14 C -0.45 -11.25 8.80 -37.95 -0.33 -11.58 15 15 H 0.08 2.02 7.73 -52.49 -0.41 1.62 15 16 C 0.08 1.82 5.14 -17.33 -0.09 1.73 15 17 N -0.78 -18.68 10.98 55.55 0.61 -18.07 15 18 Si 0.91 17.58 29.59 -169.99 -5.03 12.55 15 19 H -0.27 -5.12 7.11 56.52 0.40 -4.72 15 20 H -0.27 -5.08 7.11 56.52 0.40 -4.68 15 21 H -0.26 -4.95 7.11 56.52 0.40 -4.55 15 22 H 0.04 0.49 8.14 -51.93 -0.42 0.07 15 23 H 0.05 0.65 8.14 -51.93 -0.42 0.23 15 24 H 0.09 0.84 8.14 -51.93 -0.42 0.42 15 25 H 0.10 1.32 7.91 -52.48 -0.42 0.91 15 26 H 0.10 1.85 8.06 -52.48 -0.42 1.42 15 27 H 0.10 1.85 8.06 -52.49 -0.42 1.42 15 28 H 0.13 3.09 6.20 -52.49 -0.33 2.76 15 29 H 0.29 6.20 8.30 -40.82 -0.34 5.86 15 LS Contribution 277.67 15.07 4.18 4.18 Total: -1.00 -27.52 277.67 -7.13 -34.65 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -2.39 Total: 0.77 kcal Atomic # 6 Polarization: -17.89 SS G_CDS: -2.00 Total: -19.89 kcal Atomic # 7 Polarization: -18.68 SS G_CDS: 0.61 Total: -18.07 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -0.09 Total: -15.02 kcal Atomic # 14 Polarization: 17.58 SS G_CDS: -5.03 Total: 12.55 kcal Atomic # 16 Polarization: 3.22 SS G_CDS: -2.41 Total: 0.82 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -27.52 -7.13 -34.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396336515.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.783 kcal (2) G-P(sol) polarization free energy of solvation -27.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds