Wall clock time and date at job start Mon Mar 30 2020 06:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35499 * 117.00124 * 2 1 4 4 C 1.36053 * 122.94894 * 90.02360 * 3 2 1 5 5 C 1.40819 * 124.54646 * 359.94539 * 4 3 2 6 6 O 1.21494 * 120.00254 * 180.02562 * 5 4 3 7 7 S 1.75257 * 110.91442 * 179.97438 * 4 3 2 8 8 C 1.75858 * 92.46221 * 0.02562 * 7 4 3 9 9 C 1.39634 * 110.34751 * 359.97438 * 8 7 4 10 10 C 1.41535 * 119.00502 * 179.97438 * 9 8 7 11 11 C 1.37700 * 120.93829 * 359.97438 * 10 9 8 12 12 C 1.37948 * 120.75974 * 359.68897 * 11 10 9 13 13 C 1.40327 * 119.94078 * 0.61986 * 12 11 10 14 14 C 1.40878 * 120.08146 * 179.67347 * 13 12 11 15 15 H 1.07994 * 119.99863 * 154.10920 * 14 13 12 16 16 C 1.39934 * 119.99804 * 333.82599 * 14 13 12 17 17 N 1.30870 * 120.00062 * 343.28755 * 16 14 13 18 18 Si 1.86794 * 119.99618 * 163.28415 * 16 14 13 19 19 H 1.48505 * 109.47282 * 90.00453 * 18 16 14 20 20 H 1.48506 * 109.47241 * 210.00132 * 18 16 14 21 21 H 1.48501 * 109.47469 * 330.00373 * 18 16 14 22 22 H 1.09004 * 109.47023 * 300.00175 * 1 2 3 23 23 H 1.09000 * 109.47249 * 60.00249 * 1 2 3 24 24 H 1.09002 * 109.47111 * 180.02562 * 1 2 3 25 25 H 1.08005 * 119.99756 * 0.02562 * 5 4 3 26 26 H 1.08003 * 119.52598 * 180.02562 * 10 9 8 27 27 H 1.07995 * 119.62211 * 179.97438 * 11 10 9 28 28 H 1.08001 * 120.03381 * 180.28887 * 12 11 10 29 29 H 0.96993 * 119.99676 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2073 0.0000 4 6 2.3805 1.8664 1.1417 5 6 2.1353 1.3864 2.4427 6 8 2.4711 2.0453 3.4066 7 16 3.1592 3.3933 0.7763 8 6 3.0254 3.1333 -0.9578 9 6 2.4024 1.9112 -1.2189 10 6 2.2001 1.5174 -2.5632 11 6 2.6073 2.3204 -3.6051 12 6 3.2179 3.5336 -3.3638 13 6 3.4415 3.9550 -2.0441 14 6 4.0710 5.1903 -1.7944 15 1 3.8854 5.7134 -0.8680 16 6 4.9414 5.7366 -2.7442 17 7 5.4282 4.9821 -3.6962 18 14 5.4084 7.5430 -2.6531 19 1 6.6241 7.6983 -1.8144 20 1 5.6821 8.0531 -4.0206 21 1 4.2905 8.3136 -2.0518 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.6487 0.4325 2.5835 26 1 1.7187 0.5740 -2.7747 27 1 2.4427 1.9988 -4.6228 28 1 3.5284 4.1562 -4.1898 29 1 6.0312 5.3609 -4.3547 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396336515.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:45 Heat of formation + Delta-G solvation = -52.608920 kcal Electronic energy + Delta-G solvation = -16714.509236 eV Core-core repulsion = 13886.659812 eV Total energy + Delta-G solvation = -2827.849424 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.92524 -39.78107 -38.90526 -35.98999 -34.49214 -31.90524 -30.73888 -28.28624 -27.32896 -25.41651 -23.55207 -22.29056 -21.41427 -19.57013 -18.30357 -18.19378 -17.21681 -16.90278 -16.66558 -16.27765 -15.77549 -15.32316 -15.23697 -15.09612 -14.40641 -14.22902 -14.02564 -13.31419 -13.15329 -12.85438 -12.65288 -12.38571 -12.21863 -11.93862 -11.65383 -11.42538 -11.16244 -11.03191 -10.88581 -10.10146 -9.33389 -8.81145 -8.54174 -6.43459 -0.79072 0.66120 0.75184 0.97472 1.29126 1.36369 1.44303 1.50841 1.78117 2.15313 2.56544 2.74644 3.40434 3.48099 4.02609 4.28149 4.42780 4.51160 4.55793 4.61442 4.62558 4.79221 4.90061 5.06454 5.13390 5.31793 5.54757 5.81163 5.96326 6.08268 6.28762 6.37145 6.48100 6.71370 6.76779 8.18954 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.024658 B = 0.007115 C = 0.005681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.269149 B = 3934.461497 C = 4927.550023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.325 6.325 3 C 0.192 3.808 4 C -0.339 4.339 5 C 0.420 3.580 6 O -0.505 6.505 7 S 0.111 5.889 8 C -0.216 4.216 9 C -0.098 4.098 10 C -0.191 4.191 11 C -0.088 4.088 12 C -0.179 4.179 13 C 0.110 3.890 14 C -0.485 4.485 15 H 0.074 0.926 16 C 0.043 3.957 17 N -0.808 5.808 18 Si 0.979 3.021 19 H -0.264 1.264 20 H -0.259 1.259 21 H -0.259 1.259 22 H 0.060 0.940 23 H 0.048 0.952 24 H 0.133 0.867 25 H 0.155 0.845 26 H 0.127 0.873 27 H 0.130 0.870 28 H 0.116 0.884 29 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.291 -5.713 1.906 9.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.242 6.242 3 C 0.129 3.871 4 C -0.456 4.456 5 C 0.283 3.717 6 O -0.384 6.384 7 S 0.379 5.621 8 C -0.332 4.332 9 C -0.105 4.105 10 C -0.213 4.213 11 C -0.107 4.107 12 C -0.203 4.203 13 C 0.105 3.895 14 C -0.513 4.513 15 H 0.092 0.908 16 C -0.175 4.175 17 N -0.433 5.433 18 Si 0.799 3.201 19 H -0.188 1.188 20 H -0.182 1.182 21 H -0.183 1.183 22 H 0.078 0.922 23 H 0.067 0.933 24 H 0.151 0.849 25 H 0.171 0.829 26 H 0.145 0.855 27 H 0.147 0.853 28 H 0.134 0.866 29 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.273 -4.388 3.203 8.298 hybrid contribution -0.153 -0.135 -1.221 1.238 sum -6.426 -4.523 1.981 8.104 Atomic orbital electron populations 1.23438 0.75705 1.05822 1.01731 1.85813 1.22320 1.22073 1.94037 1.19227 0.93391 0.84975 0.89471 1.24334 1.17514 1.03339 1.00423 1.22149 0.74918 0.90775 0.83899 1.90569 1.44033 1.59960 1.43824 1.83812 1.63296 1.16488 0.98522 1.23094 1.13068 1.00058 0.96984 1.19316 1.02829 0.93911 0.94435 1.20526 1.09719 1.01743 0.89310 1.20872 0.97073 0.94122 0.98666 1.21243 1.04779 0.98390 0.95909 1.17353 0.90053 0.91919 0.90200 1.19675 1.23454 1.04092 1.04123 0.90791 1.26679 0.93543 1.04122 0.93156 1.69834 1.22437 1.38615 1.12371 0.85241 0.79376 0.76196 0.79300 1.18848 1.18245 1.18305 0.92176 0.93338 0.84869 0.82950 0.85519 0.85253 0.86650 0.89417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.13 113.37 1.26 1.80 15 2 O -0.33 -9.58 10.11 -88.00 -0.89 -10.47 15 3 C 0.19 7.13 6.01 23.56 0.14 7.27 15 4 C -0.34 -12.80 6.14 22.39 0.14 -12.66 15 5 C 0.42 13.36 11.13 68.45 0.76 14.12 15 6 O -0.51 -19.33 17.58 -3.70 -0.06 -19.39 15 7 S 0.11 4.94 22.38 -56.49 -1.26 3.68 15 8 C -0.22 -10.57 6.36 23.65 0.15 -10.42 15 9 C -0.10 -4.31 6.02 -20.33 -0.12 -4.43 15 10 C -0.19 -7.79 10.08 22.96 0.23 -7.56 15 11 C -0.09 -3.75 9.97 22.07 0.22 -3.53 15 12 C -0.18 -8.85 8.66 22.71 0.20 -8.65 15 13 C 0.11 5.78 5.58 -21.08 -0.12 5.66 15 14 C -0.49 -25.36 8.80 23.33 0.21 -25.15 15 15 H 0.07 3.84 7.73 -2.91 -0.02 3.81 15 16 C 0.04 2.05 5.14 85.25 0.44 2.49 15 17 N -0.81 -39.84 10.98 21.83 0.24 -39.60 15 18 Si 0.98 36.78 29.59 68.60 2.03 38.81 15 19 H -0.26 -9.73 7.11 99.48 0.71 -9.02 15 20 H -0.26 -9.02 7.11 99.48 0.71 -8.31 15 21 H -0.26 -9.70 7.11 99.48 0.71 -8.99 15 22 H 0.06 1.04 8.14 -2.38 -0.02 1.02 15 23 H 0.05 1.02 8.14 -2.39 -0.02 1.00 15 24 H 0.13 1.65 8.14 -2.39 -0.02 1.63 15 25 H 0.15 3.32 7.91 -2.91 -0.02 3.30 15 26 H 0.13 4.37 8.06 -2.91 -0.02 4.34 15 27 H 0.13 4.58 8.06 -2.91 -0.02 4.56 15 28 H 0.12 5.84 6.20 -2.91 -0.02 5.82 15 29 H 0.29 12.98 8.30 -92.71 -0.77 12.22 15 Total: -1.00 -61.40 277.67 4.74 -56.66 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: 1.18 Total: 11.38 kcal Atomic # 6 Polarization: -44.57 SS G_CDS: 3.50 Total: -41.06 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: 0.24 Total: -39.60 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -0.96 Total: -29.86 kcal Atomic # 14 Polarization: 36.78 SS G_CDS: 2.03 Total: 38.81 kcal Atomic # 16 Polarization: 4.94 SS G_CDS: -1.26 Total: 3.68 kcal Total: -61.40 4.74 -56.66 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396336515.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.050 kcal (2) G-P(sol) polarization free energy of solvation -61.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds