Wall clock time and date at job start Mon Mar 30 2020 06:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35641 * 116.99876 * 2 1 4 4 C 1.37484 * 120.01269 * 0.02562 * 3 2 1 5 5 C 1.39922 * 121.83468 * 180.02562 * 4 3 2 6 6 S 1.76265 * 129.91761 * 179.97438 * 5 4 3 7 7 C 1.75431 * 91.59524 * 180.02562 * 6 5 4 8 8 C 1.32216 * 110.88711 * 359.97438 * 7 6 5 9 9 C 1.40303 * 120.94275 * 359.96597 * 5 4 3 10 10 C 1.42578 * 118.97791 * 0.02562 * 9 5 4 11 11 C 1.41407 * 120.36333 * 179.97438 * 10 9 5 12 12 O 1.21473 * 119.99932 * 0.02562 * 11 10 9 13 13 C 1.41675 * 120.01212 * 179.97438 * 3 2 1 14 14 C 1.40149 * 120.50475 * 359.96554 * 13 3 2 15 15 H 1.07999 * 120.00102 * 141.18483 * 14 13 3 16 16 C 1.40479 * 120.00051 * 321.18262 * 14 13 3 17 17 N 1.30558 * 119.99641 * 339.79997 * 16 14 13 18 18 Si 1.86799 * 120.00067 * 159.80556 * 16 14 13 19 19 H 1.48496 * 109.47095 * 60.00282 * 18 16 14 20 20 H 1.48506 * 109.47039 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.46996 * 299.99480 * 18 16 14 22 22 H 1.08994 * 109.47645 * 59.99737 * 1 2 3 23 23 H 1.09003 * 109.47409 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.47406 * 299.99533 * 1 2 3 25 25 H 1.07995 * 119.08580 * 0.02562 * 4 3 2 26 26 H 1.07997 * 124.55976 * 179.73433 * 7 6 5 27 27 H 1.08008 * 122.06976 * 179.97438 * 8 7 6 28 28 H 1.07999 * 120.00628 * 179.97438 * 11 10 9 29 29 H 0.97005 * 119.99565 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2962 2.3618 0.0005 5 6 1.8915 3.6281 0.0000 6 16 1.1492 5.2268 -0.0001 7 6 2.7191 6.0096 -0.0016 8 6 3.6922 5.1144 -0.0014 9 6 3.2874 3.7690 -0.0004 10 6 4.0999 2.5975 -0.0008 11 6 5.5099 2.7055 -0.0017 12 8 6.0351 3.8008 -0.0017 13 6 3.4596 1.2831 0.0005 14 6 4.2335 0.1146 0.0018 15 1 5.1395 0.0664 -0.5840 16 6 3.8307 -0.9938 0.7651 17 7 2.9953 -0.8353 1.7558 18 14 4.4907 -2.6944 0.3628 19 1 5.9706 -2.6928 0.4857 20 1 3.9160 -3.6848 1.3084 21 1 4.1095 -3.0575 -1.0256 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8901 25 1 0.2188 2.2883 0.0014 26 1 2.8705 7.0789 -0.0063 27 1 4.7339 5.3998 -0.0027 28 1 6.1198 1.8142 -0.0016 29 1 2.7169 -1.6007 2.2826 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396337092.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:38 Heat of formation + Delta-G solvation = -29.495802 kcal Electronic energy + Delta-G solvation = -17225.683857 eV Core-core repulsion = 14398.836694 eV Total energy + Delta-G solvation = -2826.847164 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.18271 -37.84410 -36.27779 -34.67061 -32.90842 -30.39738 -28.42588 -26.68914 -25.57651 -23.36842 -22.35970 -19.89191 -19.64344 -17.52731 -17.05037 -16.09325 -15.61454 -15.23850 -14.77628 -14.42584 -13.91176 -13.65983 -13.34184 -13.09508 -12.49930 -12.24747 -12.09613 -12.03315 -11.54565 -11.43724 -11.22636 -10.98033 -10.87582 -10.56831 -10.30667 -9.81078 -9.58795 -9.12280 -8.43286 -8.23466 -7.36129 -7.07756 -6.76183 -4.76258 1.40985 2.17400 2.52771 2.87685 2.89881 2.91699 2.94237 3.41774 3.65658 3.76532 4.24904 4.36098 5.19651 5.62296 5.66045 5.70564 5.75077 5.92600 5.99778 6.30887 6.40490 6.51704 6.62466 6.79963 6.82722 7.08488 7.10336 7.25114 7.55695 7.75046 7.94479 8.00254 8.26615 8.64459 8.98310 9.70107 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.023049 B = 0.008368 C = 0.006342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.510200 B = 3345.384652 C = 4413.644827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.279 6.279 3 C 0.115 3.885 4 C -0.158 4.158 5 C -0.193 4.193 6 S 0.008 5.992 7 C -0.218 4.218 8 C -0.107 4.107 9 C 0.000 4.000 10 C -0.298 4.298 11 C 0.386 3.614 12 O -0.539 6.539 13 C 0.151 3.849 14 C -0.418 4.418 15 H 0.099 0.901 16 C 0.082 3.918 17 N -0.728 5.728 18 Si 0.917 3.083 19 H -0.260 1.260 20 H -0.275 1.275 21 H -0.258 1.258 22 H 0.041 0.959 23 H 0.084 0.916 24 H 0.045 0.955 25 H 0.105 0.895 26 H 0.151 0.849 27 H 0.151 0.849 28 H 0.074 0.926 29 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.083 -1.168 -1.503 4.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.191 6.191 3 C 0.067 3.933 4 C -0.181 4.181 5 C -0.308 4.308 6 S 0.268 5.732 7 C -0.352 4.352 8 C -0.138 4.138 9 C -0.008 4.008 10 C -0.304 4.304 11 C 0.259 3.741 12 O -0.425 6.425 13 C 0.146 3.854 14 C -0.443 4.443 15 H 0.117 0.883 16 C -0.145 4.145 17 N -0.348 5.348 18 Si 0.740 3.260 19 H -0.185 1.185 20 H -0.200 1.200 21 H -0.182 1.182 22 H 0.059 0.941 23 H 0.102 0.898 24 H 0.063 0.937 25 H 0.123 0.877 26 H 0.169 0.831 27 H 0.168 0.832 28 H 0.091 0.909 29 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.346 -0.364 -1.285 5.510 hybrid contribution 0.967 -1.200 0.005 1.541 sum -4.379 -1.564 -1.280 4.823 Atomic orbital electron populations 1.22832 0.81672 1.02160 1.00112 1.86198 1.18172 1.26658 1.88112 1.19065 0.92190 0.82738 0.99271 1.19910 0.97836 0.90303 1.10045 1.21681 0.95389 0.94867 1.18897 1.83372 1.09760 0.98718 1.81340 1.24871 0.95000 1.02241 1.13085 1.20426 1.01051 0.91776 1.00533 1.18024 0.91115 0.92660 0.98968 1.19816 0.94495 0.90052 1.26065 1.21789 0.89531 0.91460 0.71338 1.90328 1.76741 1.31865 1.43590 1.17985 0.87994 0.91909 0.87537 1.19622 1.07848 0.95402 1.21392 0.88309 1.26035 0.93562 1.01687 0.93214 1.69568 1.20536 1.34663 1.10013 0.86179 0.80196 0.79512 0.80083 1.18454 1.19950 1.18215 0.94074 0.89759 0.93675 0.87695 0.83149 0.83171 0.90931 0.89558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 9.80 101.05 0.99 1.46 15 2 O -0.28 -6.00 7.39 -18.62 -0.14 -6.14 15 3 C 0.12 2.69 6.16 -38.55 -0.24 2.45 15 4 C -0.16 -3.50 9.01 -39.23 -0.35 -3.86 15 5 C -0.19 -4.43 6.49 -38.18 -0.25 -4.68 15 6 S 0.01 0.15 23.29 -107.50 -2.50 -2.36 15 7 C -0.22 -4.20 11.07 28.81 0.32 -3.88 15 8 C -0.11 -2.37 9.32 -40.66 -0.38 -2.75 15 9 C 0.00 0.00 5.85 -106.60 -0.62 -0.62 15 10 C -0.30 -7.33 5.97 -103.82 -0.62 -7.95 15 11 C 0.39 9.03 10.82 31.94 0.35 9.38 15 12 O -0.54 -13.32 14.88 5.39 0.08 -13.23 15 13 C 0.15 3.68 5.52 -104.67 -0.58 3.10 15 14 C -0.42 -9.62 7.96 -38.02 -0.30 -9.92 15 15 H 0.10 2.12 7.19 -52.49 -0.38 1.74 15 16 C 0.08 1.78 4.41 -17.25 -0.08 1.71 15 17 N -0.73 -16.43 11.24 55.58 0.62 -15.81 15 18 Si 0.92 16.29 29.61 -169.99 -5.03 11.26 15 19 H -0.26 -4.55 7.11 56.52 0.40 -4.15 15 20 H -0.27 -4.76 7.11 56.52 0.40 -4.36 15 21 H -0.26 -4.61 7.11 56.52 0.40 -4.21 15 22 H 0.04 0.62 7.64 -51.93 -0.40 0.22 15 23 H 0.08 1.16 8.14 -51.93 -0.42 0.73 15 24 H 0.04 0.72 7.64 -51.93 -0.40 0.32 15 25 H 0.11 2.06 6.15 -52.49 -0.32 1.74 15 26 H 0.15 2.37 8.06 -52.49 -0.42 1.94 15 27 H 0.15 3.36 6.01 -52.48 -0.32 3.05 15 28 H 0.07 1.55 6.79 -52.49 -0.36 1.19 15 29 H 0.29 5.97 8.29 -40.82 -0.34 5.63 15 LS Contribution 266.02 15.07 4.01 4.01 Total: -1.00 -27.12 266.02 -6.87 -33.99 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -2.14 Total: 3.85 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: -1.76 Total: -15.57 kcal Atomic # 7 Polarization: -16.43 SS G_CDS: 0.62 Total: -15.81 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.06 Total: -19.37 kcal Atomic # 14 Polarization: 16.29 SS G_CDS: -5.03 Total: 11.26 kcal Atomic # 16 Polarization: 0.15 SS G_CDS: -2.50 Total: -2.36 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -27.12 -6.87 -33.99 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396337092.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.491 kcal (2) G-P(sol) polarization free energy of solvation -27.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds