Wall clock time and date at job start Mon Mar 30 2020 06:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35641 * 116.99876 * 2 1 4 4 C 1.37484 * 120.01269 * 0.02562 * 3 2 1 5 5 C 1.39922 * 121.83468 * 180.02562 * 4 3 2 6 6 S 1.76265 * 129.91761 * 179.97438 * 5 4 3 7 7 C 1.75431 * 91.59524 * 180.02562 * 6 5 4 8 8 C 1.32216 * 110.88711 * 359.97438 * 7 6 5 9 9 C 1.40303 * 120.94275 * 359.96597 * 5 4 3 10 10 C 1.42578 * 118.97791 * 0.02562 * 9 5 4 11 11 C 1.41407 * 120.36333 * 179.97438 * 10 9 5 12 12 O 1.21473 * 119.99932 * 0.02562 * 11 10 9 13 13 C 1.41675 * 120.01212 * 179.97438 * 3 2 1 14 14 C 1.40149 * 120.50475 * 359.96554 * 13 3 2 15 15 H 1.07999 * 120.00102 * 141.18483 * 14 13 3 16 16 C 1.40479 * 120.00051 * 321.18262 * 14 13 3 17 17 N 1.30558 * 119.99641 * 339.79997 * 16 14 13 18 18 Si 1.86799 * 120.00067 * 159.80556 * 16 14 13 19 19 H 1.48496 * 109.47095 * 60.00282 * 18 16 14 20 20 H 1.48506 * 109.47039 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.46996 * 299.99480 * 18 16 14 22 22 H 1.08994 * 109.47645 * 59.99737 * 1 2 3 23 23 H 1.09003 * 109.47409 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.47406 * 299.99533 * 1 2 3 25 25 H 1.07995 * 119.08580 * 0.02562 * 4 3 2 26 26 H 1.07997 * 124.55976 * 179.73433 * 7 6 5 27 27 H 1.08008 * 122.06976 * 179.97438 * 8 7 6 28 28 H 1.07999 * 120.00628 * 179.97438 * 11 10 9 29 29 H 0.97005 * 119.99565 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2962 2.3618 0.0005 5 6 1.8915 3.6281 0.0000 6 16 1.1492 5.2268 -0.0001 7 6 2.7191 6.0096 -0.0016 8 6 3.6922 5.1144 -0.0014 9 6 3.2874 3.7690 -0.0004 10 6 4.0999 2.5975 -0.0008 11 6 5.5099 2.7055 -0.0017 12 8 6.0351 3.8008 -0.0017 13 6 3.4596 1.2831 0.0005 14 6 4.2335 0.1146 0.0018 15 1 5.1395 0.0664 -0.5840 16 6 3.8307 -0.9938 0.7651 17 7 2.9953 -0.8353 1.7558 18 14 4.4907 -2.6944 0.3628 19 1 5.9706 -2.6928 0.4857 20 1 3.9160 -3.6848 1.3084 21 1 4.1095 -3.0575 -1.0256 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8901 25 1 0.2188 2.2883 0.0014 26 1 2.8705 7.0789 -0.0063 27 1 4.7339 5.3998 -0.0027 28 1 6.1198 1.8142 -0.0016 29 1 2.7169 -1.6007 2.2826 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396337092.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:37 Heat of formation + Delta-G solvation = -44.014055 kcal Electronic energy + Delta-G solvation = -17226.313416 eV Core-core repulsion = 14398.836694 eV Total energy + Delta-G solvation = -2827.476722 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.84879 -39.53590 -37.99300 -36.34799 -34.56868 -32.11509 -30.07312 -28.15966 -27.25400 -25.06942 -24.03617 -21.57485 -21.32182 -19.22410 -18.73107 -17.68189 -17.24368 -16.90362 -16.28248 -16.05016 -15.54136 -15.25083 -14.96973 -14.86702 -14.06461 -13.91390 -13.81023 -13.56192 -13.11909 -13.02696 -12.77070 -12.50220 -12.36234 -12.06274 -11.86771 -11.42782 -11.20777 -10.74462 -10.15522 -10.00785 -9.03085 -8.75677 -8.39554 -6.51739 -0.30991 0.47509 0.93775 1.26948 1.43322 1.48826 1.56202 1.73575 2.00551 2.18332 2.66604 2.75321 3.43763 4.03515 4.17216 4.23892 4.38576 4.45864 4.62891 4.71584 4.78506 4.88612 4.95597 5.10986 5.14293 5.37674 5.42347 5.54112 5.83855 6.03939 6.21455 6.31192 6.53402 6.99771 7.19436 8.07472 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.023049 B = 0.008368 C = 0.006342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.510200 B = 3345.384652 C = 4413.644827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.296 6.296 3 C 0.103 3.897 4 C -0.163 4.163 5 C -0.226 4.226 6 S 0.065 5.935 7 C -0.198 4.198 8 C -0.142 4.142 9 C -0.024 4.024 10 C -0.335 4.335 11 C 0.382 3.618 12 O -0.562 6.562 13 C 0.125 3.875 14 C -0.428 4.428 15 H 0.106 0.894 16 C 0.050 3.950 17 N -0.751 5.751 18 Si 0.985 3.015 19 H -0.255 1.255 20 H -0.265 1.265 21 H -0.258 1.258 22 H 0.054 0.946 23 H 0.112 0.888 24 H 0.047 0.953 25 H 0.127 0.873 26 H 0.190 0.810 27 H 0.140 0.860 28 H 0.092 0.908 29 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.275 -1.829 -1.581 5.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.209 6.209 3 C 0.055 3.945 4 C -0.187 4.187 5 C -0.341 4.341 6 S 0.327 5.673 7 C -0.332 4.332 8 C -0.172 4.172 9 C -0.032 4.032 10 C -0.341 4.341 11 C 0.257 3.743 12 O -0.451 6.451 13 C 0.120 3.880 14 C -0.453 4.453 15 H 0.124 0.876 16 C -0.175 4.175 17 N -0.371 5.371 18 Si 0.805 3.195 19 H -0.179 1.179 20 H -0.189 1.189 21 H -0.182 1.182 22 H 0.073 0.927 23 H 0.130 0.870 24 H 0.065 0.935 25 H 0.145 0.855 26 H 0.207 0.793 27 H 0.158 0.842 28 H 0.108 0.892 29 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.561 -1.023 -1.357 6.777 hybrid contribution 1.202 -0.999 0.054 1.564 sum -5.359 -2.022 -1.303 5.874 Atomic orbital electron populations 1.23131 0.79193 1.04316 1.00813 1.86138 1.20766 1.25994 1.87986 1.19162 0.92186 0.83722 0.99450 1.20143 0.98897 0.89987 1.09631 1.22110 0.95699 0.97022 1.19252 1.83072 1.08506 0.95755 1.80015 1.25369 0.94539 1.03838 1.09408 1.20370 1.01363 0.91716 1.03796 1.18384 0.92032 0.93467 0.99340 1.20064 0.95124 0.90809 1.28126 1.21982 0.89636 0.91669 0.71024 1.90299 1.76947 1.32600 1.45251 1.18334 0.89180 0.92301 0.88165 1.19995 1.08126 0.95890 1.21260 0.87585 1.26817 0.93506 1.04697 0.92500 1.69591 1.20834 1.36210 1.10462 0.85167 0.79759 0.74844 0.79755 1.17851 1.18878 1.18250 0.92724 0.86959 0.93478 0.85509 0.79264 0.84246 0.89203 0.88565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.64 9.80 113.37 1.11 1.75 15 2 O -0.30 -12.54 7.39 -89.55 -0.66 -13.20 15 3 C 0.10 4.83 6.16 22.94 0.14 4.97 15 4 C -0.16 -7.23 9.01 22.50 0.20 -7.02 15 5 C -0.23 -10.30 6.49 23.18 0.15 -10.15 15 6 S 0.07 2.39 23.29 -56.49 -1.32 1.08 15 7 C -0.20 -7.24 11.07 66.79 0.74 -6.50 15 8 C -0.14 -6.31 9.32 21.79 0.20 -6.11 15 9 C -0.02 -1.19 5.85 -21.14 -0.12 -1.31 15 10 C -0.34 -17.08 5.97 -19.34 -0.12 -17.19 15 11 C 0.38 18.58 10.82 68.60 0.74 19.32 15 12 O -0.56 -28.88 14.88 -3.63 -0.05 -28.93 15 13 C 0.13 6.25 5.52 -19.89 -0.11 6.14 15 14 C -0.43 -19.89 7.96 23.28 0.19 -19.70 15 15 H 0.11 4.58 7.19 -2.91 -0.02 4.56 15 16 C 0.05 2.14 4.41 85.43 0.38 2.51 15 17 N -0.75 -33.47 11.24 21.92 0.25 -33.22 15 18 Si 0.99 32.17 29.61 68.60 2.03 34.20 15 19 H -0.25 -8.05 7.11 99.48 0.71 -7.34 15 20 H -0.26 -8.15 7.11 99.48 0.71 -7.45 15 21 H -0.26 -8.42 7.11 99.48 0.71 -7.71 15 22 H 0.05 1.54 7.64 -2.39 -0.02 1.52 15 23 H 0.11 2.80 8.14 -2.39 -0.02 2.78 15 24 H 0.05 1.43 7.64 -2.38 -0.02 1.41 15 25 H 0.13 4.83 6.15 -2.91 -0.02 4.81 15 26 H 0.19 5.30 8.06 -2.91 -0.02 5.28 15 27 H 0.14 6.44 6.01 -2.91 -0.02 6.42 15 28 H 0.09 3.96 6.79 -2.91 -0.02 3.94 15 29 H 0.30 12.00 8.29 -92.70 -0.77 11.24 15 Total: -1.00 -58.87 266.02 4.95 -53.93 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 1.20 Total: 19.45 kcal Atomic # 6 Polarization: -36.80 SS G_CDS: 3.50 Total: -33.29 kcal Atomic # 7 Polarization: -33.47 SS G_CDS: 0.25 Total: -33.22 kcal Atomic # 8 Polarization: -41.42 SS G_CDS: -0.72 Total: -42.13 kcal Atomic # 14 Polarization: 32.17 SS G_CDS: 2.03 Total: 34.20 kcal Atomic # 16 Polarization: 2.39 SS G_CDS: -1.32 Total: 1.08 kcal Total: -58.87 4.95 -53.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396337092.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.912 kcal (2) G-P(sol) polarization free energy of solvation -58.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds