Wall clock time and date at job start Mon Mar 30 2020 06:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35616 * 116.99744 * 2 1 4 4 C 1.38738 * 119.63854 * 0.02562 * 3 2 1 5 5 C 1.37540 * 120.53379 * 180.02562 * 4 3 2 6 6 C 1.40508 * 119.96112 * 0.25677 * 5 4 3 7 7 C 1.40810 * 120.03212 * 179.75811 * 6 5 4 8 8 H 1.08004 * 119.99337 * 154.10509 * 7 6 5 9 9 C 1.39867 * 120.00392 * 334.10210 * 7 6 5 10 10 N 1.30927 * 119.99902 * 342.69968 * 9 7 6 11 11 Si 1.86796 * 119.99887 * 162.69578 * 9 7 6 12 12 H 1.48501 * 109.47356 * 90.00775 * 11 9 7 13 13 H 1.48505 * 109.47191 * 210.00518 * 11 9 7 14 14 H 1.48498 * 109.47468 * 330.00409 * 11 9 7 15 15 C 1.42358 * 119.93095 * 359.43149 * 6 5 4 16 16 S 1.75779 * 130.32957 * 180.27850 * 15 6 5 17 17 C 1.70013 * 93.09873 * 180.28769 * 16 15 6 18 18 C 1.35443 * 111.94987 * 359.97438 * 17 16 15 19 19 C 1.41704 * 123.19288 * 180.02562 * 18 17 16 20 20 O 1.21418 * 119.99767 * 179.97438 * 19 18 17 21 21 C 1.38777 * 119.54156 * 0.58940 * 15 6 5 22 22 H 1.09001 * 109.46698 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47573 * 299.99796 * 1 2 3 24 24 H 1.09001 * 109.47104 * 60.00452 * 1 2 3 25 25 H 1.07998 * 119.73049 * 0.02562 * 4 3 2 26 26 H 1.07999 * 120.01407 * 179.97438 * 5 4 3 27 27 H 0.97002 * 119.99830 * 179.97438 * 10 9 7 28 28 H 1.08000 * 124.02463 * 180.02562 * 17 16 15 29 29 H 1.07992 * 120.00564 * 359.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0445 1.2084 0.0000 4 6 1.2815 2.3671 0.0005 5 6 1.8867 3.6022 0.0000 6 6 3.2886 3.6968 -0.0065 7 6 3.9096 4.9605 -0.0122 8 1 4.9048 5.0748 0.3916 9 6 3.2379 6.0676 -0.5407 10 7 2.2026 5.8930 -1.3231 11 14 3.8176 7.7952 -0.1304 12 1 4.8173 8.2342 -1.1370 13 1 2.6585 8.7234 -0.1467 14 1 4.4380 7.8019 1.2188 15 6 4.0803 2.5137 -0.0004 16 16 5.8267 2.3136 0.0005 17 6 5.7247 0.6165 0.0010 18 6 4.4403 0.1865 0.0010 19 6 4.0812 -1.1843 0.0019 20 8 2.9101 -1.5050 0.0024 21 6 3.4575 1.2736 -0.0003 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 0.2037 2.2987 0.0014 26 1 1.2846 4.4988 0.0000 27 1 1.7365 6.6608 -1.6893 28 1 6.5819 -0.0404 0.0020 29 1 4.8490 -1.9437 0.0021 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396338085.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:13 Heat of formation + Delta-G solvation = -29.106032 kcal Electronic energy + Delta-G solvation = -17077.296346 eV Core-core repulsion = 14250.466084 eV Total energy + Delta-G solvation = -2826.830262 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.24055 -37.87117 -36.50548 -34.71054 -32.84397 -29.51648 -28.68461 -26.79008 -25.01974 -24.36089 -21.87295 -20.79528 -19.10744 -17.53887 -16.93825 -16.02146 -15.67768 -14.99632 -14.75018 -14.68486 -13.94310 -13.65901 -13.57008 -13.18205 -12.72828 -12.24693 -11.94774 -11.80680 -11.32447 -11.22660 -11.19324 -10.71734 -10.68467 -10.47956 -9.90545 -9.75721 -9.64695 -9.06162 -8.91800 -8.05903 -7.51203 -6.93181 -6.61564 -4.35284 1.23966 2.43050 2.45851 2.68703 2.96651 3.00731 3.03460 3.10028 3.80859 3.85000 4.50214 4.55799 4.99847 5.31102 5.38927 5.82111 5.87526 5.95594 6.10266 6.14495 6.28807 6.38587 6.71584 6.78327 6.99537 7.10795 7.20923 7.67120 7.77785 7.84626 8.24348 8.28313 8.56186 8.66455 8.82875 10.04767 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.023798 B = 0.007827 C = 0.005997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.288199 B = 3576.518978 C = 4667.926567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.282 6.282 3 C 0.033 3.967 4 C -0.166 4.166 5 C -0.133 4.133 6 C 0.126 3.874 7 C -0.458 4.458 8 H 0.080 0.920 9 C 0.077 3.923 10 N -0.789 5.789 11 Si 0.909 3.091 12 H -0.268 1.268 13 H -0.275 1.275 14 H -0.259 1.259 15 C -0.212 4.212 16 S 0.157 5.843 17 C -0.198 4.198 18 C -0.189 4.189 19 C 0.375 3.625 20 O -0.428 6.428 21 C -0.043 4.043 22 H 0.080 0.920 23 H 0.037 0.963 24 H 0.038 0.962 25 H 0.105 0.895 26 H 0.128 0.872 27 H 0.283 0.717 28 H 0.161 0.839 29 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.064 -4.705 1.706 5.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.195 6.195 3 C -0.014 4.014 4 C -0.185 4.185 5 C -0.156 4.156 6 C 0.120 3.880 7 C -0.487 4.487 8 H 0.098 0.902 9 C -0.141 4.141 10 N -0.414 5.414 11 Si 0.733 3.267 12 H -0.193 1.193 13 H -0.200 1.200 14 H -0.183 1.183 15 C -0.328 4.328 16 S 0.426 5.574 17 C -0.336 4.336 18 C -0.207 4.207 19 C 0.232 3.768 20 O -0.301 6.301 21 C -0.048 4.048 22 H 0.099 0.901 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.122 0.878 26 H 0.146 0.854 27 H 0.094 0.906 28 H 0.178 0.822 29 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.637 -3.933 1.556 5.579 hybrid contribution -1.094 0.046 0.007 1.095 sum 2.544 -3.887 1.563 4.901 Atomic orbital electron populations 1.22760 0.82566 1.01585 0.99724 1.86471 1.17502 1.25724 1.89841 1.18367 0.89448 0.84343 1.09260 1.20788 0.97932 0.92780 1.07044 1.20967 0.94015 0.95718 1.04928 1.16909 0.91016 0.89785 0.90290 1.19353 1.02318 0.91941 1.35081 0.90211 1.25870 0.94082 1.01692 0.92466 1.69847 1.16793 1.33501 1.21292 0.86288 0.79288 0.80793 0.80354 1.19315 1.19961 1.18279 1.22416 0.94634 0.96347 1.19361 1.82411 1.04892 0.96375 1.73732 1.25378 1.00023 1.02769 1.05417 1.19921 0.92445 0.96882 1.11483 1.22104 0.91552 0.89762 0.73425 1.90629 1.21831 1.84373 1.33309 1.17685 0.90275 0.90506 1.06295 0.90147 0.94399 0.94327 0.87753 0.85422 0.90588 0.82181 0.90462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 9.79 101.05 0.99 1.52 15 2 O -0.28 -6.37 6.38 -43.76 -0.28 -6.65 15 3 C 0.03 0.80 6.76 -38.18 -0.26 0.54 15 4 C -0.17 -3.92 8.97 -39.65 -0.36 -4.28 15 5 C -0.13 -3.37 8.65 -38.98 -0.34 -3.71 15 6 C 0.13 3.25 5.59 -106.49 -0.59 2.65 15 7 C -0.46 -11.55 8.80 -38.00 -0.33 -11.88 15 8 H 0.08 1.93 7.74 -52.48 -0.41 1.53 15 9 C 0.08 1.85 5.12 -17.33 -0.09 1.77 15 10 N -0.79 -19.53 10.99 55.54 0.61 -18.92 15 11 Si 0.91 17.86 29.59 -169.99 -5.03 12.83 15 12 H -0.27 -5.21 7.11 56.52 0.40 -4.81 15 13 H -0.27 -5.28 7.11 56.52 0.40 -4.88 15 14 H -0.26 -5.06 7.11 56.52 0.40 -4.66 15 15 C -0.21 -5.12 6.34 -37.80 -0.24 -5.36 15 16 S 0.16 3.02 22.54 -107.50 -2.42 0.59 15 17 C -0.20 -3.37 10.64 29.73 0.32 -3.05 15 18 C -0.19 -3.78 5.83 -106.22 -0.62 -4.40 15 19 C 0.38 6.75 11.29 32.05 0.36 7.11 15 20 O -0.43 -9.17 13.60 -19.78 -0.27 -9.44 15 21 C -0.04 -1.02 6.02 -105.13 -0.63 -1.65 15 22 H 0.08 1.23 8.14 -51.93 -0.42 0.80 15 23 H 0.04 0.63 7.63 -51.93 -0.40 0.23 15 24 H 0.04 0.66 7.63 -51.93 -0.40 0.26 15 25 H 0.10 2.19 6.20 -52.49 -0.33 1.87 15 26 H 0.13 3.27 6.20 -52.49 -0.33 2.95 15 27 H 0.28 6.36 8.30 -40.82 -0.34 6.02 15 28 H 0.16 1.98 8.06 -52.49 -0.42 1.55 15 29 H 0.08 1.01 8.06 -52.49 -0.42 0.59 15 LS Contribution 266.19 15.07 4.01 4.01 Total: -1.00 -29.44 266.19 -7.42 -36.87 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -2.25 Total: 1.45 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: -1.79 Total: -20.74 kcal Atomic # 7 Polarization: -19.53 SS G_CDS: 0.61 Total: -18.92 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.55 Total: -16.09 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.83 kcal Atomic # 16 Polarization: 3.02 SS G_CDS: -2.42 Total: 0.59 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -29.44 -7.42 -36.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396338085.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.761 kcal (2) G-P(sol) polarization free energy of solvation -29.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds