Wall clock time and date at job start Mon Mar 30 2020 06:13:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42893 * 1
3 3 C 1.35571 * 116.99980 * 2 1
4 4 C 1.38867 * 120.13086 * 5.33895 * 3 2 1
5 5 C 1.37091 * 120.79984 * 179.97438 * 4 3 2
6 6 C 1.42111 * 121.08134 * 0.02562 * 5 4 3
7 7 C 1.40161 * 128.41265 * 179.97438 * 6 5 4
8 8 C 1.35326 * 115.31037 * 180.02562 * 7 6 5
9 9 C 1.41646 * 124.78900 * 180.02562 * 8 7 6
10 10 O 1.21410 * 119.99985 * 359.97438 * 9 8 7
11 11 S 1.75473 * 110.42432 * 0.02562 * 8 7 6
12 12 C 1.39745 * 118.84433 * 0.02562 * 6 5 4
13 13 C 1.40918 * 120.13215 * 185.05825 * 3 2 1
14 14 C 1.40746 * 120.12970 * 359.97438 * 13 3 2
15 15 H 1.08000 * 119.99573 * 136.08152 * 14 13 3
16 16 C 1.39888 * 120.00560 * 316.07554 * 14 13 3
17 17 N 1.30930 * 120.00420 * 159.07133 * 16 14 13
18 18 Si 1.86805 * 119.99869 * 339.07270 * 16 14 13
19 19 H 1.48504 * 109.47257 * 94.31654 * 18 16 14
20 20 H 1.48495 * 109.47139 * 214.31867 * 18 16 14
21 21 H 1.48497 * 109.46955 * 334.31636 * 18 16 14
22 22 H 1.08997 * 109.47530 * 295.44376 * 1 2 3
23 23 H 1.09000 * 109.47488 * 55.44464 * 1 2 3
24 24 H 1.09002 * 109.47165 * 175.44676 * 1 2 3
25 25 H 1.08005 * 119.59587 * 359.97438 * 4 3 2
26 26 H 1.08002 * 119.46011 * 179.97438 * 5 4 3
27 27 H 1.08001 * 122.34459 * 359.97438 * 7 6 5
28 28 H 1.07991 * 120.00548 * 180.02562 * 9 8 7
29 29 H 0.97002 * 120.00397 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4289 0.0000 0.0000
3 6 2.0444 1.2079 0.0000
4 6 1.2954 2.3719 0.1118
5 6 1.9036 3.6006 0.1138
6 6 3.3151 3.7206 0.0013
7 6 4.0914 4.8875 -0.0138
8 6 5.4253 4.6935 -0.1336
9 6 6.3924 5.7278 -0.1698
10 8 6.0435 6.8881 -0.0911
11 16 5.7879 2.9798 -0.2378
12 6 4.0835 2.5590 -0.1130
13 6 3.4472 1.2871 -0.1075
14 6 4.2150 0.1124 -0.2147
15 1 5.0208 0.0575 -0.9317
16 6 3.9345 -0.9841 0.6075
17 7 4.3356 -2.1815 0.2615
18 14 2.9877 -0.7400 2.1992
19 1 1.5427 -0.9835 1.9580
20 1 3.4862 -1.6933 3.2229
21 1 3.1814 0.6509 2.6820
22 1 -0.3634 0.4415 0.9279
23 1 -0.3634 0.5829 -0.8463
24 1 -0.3633 -1.0244 -0.0816
25 1 0.2207 2.3084 0.1981
26 1 1.3000 4.4919 0.2014
27 1 3.6554 5.8726 0.0639
28 1 7.4399 5.4845 -0.2683
29 1 4.1408 -2.9418 0.8314
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000396338099.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:13:40
Heat of formation + Delta-G solvation = -26.585865 kcal
Electronic energy + Delta-G solvation = -16947.458357 eV
Core-core repulsion = 14120.737378 eV
Total energy + Delta-G solvation = -2826.720979 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 262.045 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-39.40025 -38.80354 -37.11807 -34.22825 -33.14014 -30.80045 -28.87513 -26.85129
-25.51862 -24.42861 -21.90612 -20.79961 -19.29519 -18.08255 -17.01856 -16.85265
-15.59309 -15.51787 -15.01000 -14.70398 -14.32812 -14.11702 -14.00441 -13.17648
-12.98739 -12.58239 -12.43430 -12.02341 -11.54688 -11.39978 -11.19902 -11.07756
-10.66277 -10.32617 -10.16917 -9.71438 -9.63433 -9.56448 -9.14851 -8.57239
-7.47556 -6.97765 -6.83849 -4.50212 0.74241 2.16013 2.24097 2.48366
2.77313 3.09945 3.18553 3.26454 3.39994 4.02835 4.32748 4.36040
4.66959 4.98573 5.48285 5.59067 5.64984 5.65979 5.71239 5.88364
5.93775 6.08755 6.28408 6.39154 6.64034 6.95884 7.02786 7.21858
7.32010 7.48672 7.65394 8.02733 8.19452 8.52693 8.70845 10.04970
Molecular weight = 262.05amu
Principal moments of inertia in cm(-1)
A = 0.025644 B = 0.007899 C = 0.006573
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1091.594470 B = 3543.882203 C = 4258.871951
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.030 3.970
2 O -0.293 6.293
3 C 0.026 3.974
4 C -0.154 4.154
5 C -0.155 4.155
6 C -0.098 4.098
7 C -0.012 4.012
8 C -0.327 4.327
9 C 0.414 3.586
10 O -0.480 6.480
11 S 0.128 5.872
12 C -0.145 4.145
13 C 0.097 3.903
14 C -0.451 4.451
15 H 0.095 0.905
16 C 0.107 3.893
17 N -0.800 5.800
18 Si 0.907 3.093
19 H -0.249 1.249
20 H -0.291 1.291
21 H -0.258 1.258
22 H 0.041 0.959
23 H 0.047 0.953
24 H 0.086 0.914
25 H 0.111 0.889
26 H 0.107 0.893
27 H 0.137 0.863
28 H 0.096 0.904
29 H 0.285 0.715
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.917 4.813 0.977 5.712
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 O -0.208 6.208
3 C -0.023 4.023
4 C -0.174 4.174
5 C -0.178 4.178
6 C -0.105 4.105
7 C -0.047 4.047
8 C -0.443 4.443
9 C 0.275 3.725
10 O -0.358 6.358
11 S 0.396 5.604
12 C -0.262 4.262
13 C 0.090 3.910
14 C -0.479 4.479
15 H 0.113 0.887
16 C -0.114 4.114
17 N -0.424 5.424
18 Si 0.733 3.267
19 H -0.174 1.174
20 H -0.218 1.218
21 H -0.181 1.181
22 H 0.060 0.940
23 H 0.065 0.935
24 H 0.104 0.896
25 H 0.129 0.871
26 H 0.125 0.875
27 H 0.154 0.846
28 H 0.112 0.888
29 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges -1.486 4.148 0.864 4.490
hybrid contribution -2.038 0.654 0.775 2.276
sum -3.524 4.802 1.639 6.178
Atomic orbital electron populations
1.22804 0.81189 1.02489 1.00106 1.86151 1.18693 1.26758 1.89168
1.18904 0.91525 0.83561 1.08348 1.20617 0.98543 0.92463 1.05737
1.20141 0.91376 0.96184 1.10069 1.17988 0.94490 0.91127 1.06862
1.20708 0.91895 0.98741 0.93396 1.23812 0.99089 1.00790 1.20617
1.21726 0.93515 0.86585 0.70625 1.90526 1.85142 1.22507 1.37582
1.83694 1.05393 0.94992 1.76360 1.22936 0.94953 0.96568 1.11746
1.16301 0.88563 0.90923 0.95166 1.19033 1.15488 0.94487 1.18857
0.88689 1.25897 0.92502 0.93479 0.99489 1.69746 1.36984 0.99638
1.36009 0.86336 0.81259 0.79583 0.79552 1.17426 1.21804 1.18143
0.94029 0.93451 0.89577 0.87078 0.87478 0.84567 0.88794 0.90476
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.49 9.39 101.05 0.95 1.43 15
2 O -0.29 -6.42 5.96 -18.41 -0.11 -6.53 15
3 C 0.03 0.59 5.20 -38.34 -0.20 0.40 15
4 C -0.15 -3.04 8.97 -39.76 -0.36 -3.39 15
5 C -0.16 -3.00 10.06 -38.51 -0.39 -3.39 15
6 C -0.10 -2.04 5.86 -107.13 -0.63 -2.66 15
7 C -0.01 -0.22 9.80 -39.90 -0.39 -0.61 15
8 C -0.33 -5.79 6.17 -39.32 -0.24 -6.03 15
9 C 0.41 6.40 11.46 32.03 0.37 6.77 15
10 O -0.48 -8.66 17.45 5.44 0.09 -8.56 15
11 S 0.13 2.45 22.93 -107.50 -2.46 -0.01 15
12 C -0.15 -3.27 6.37 -37.49 -0.24 -3.51 15
13 C 0.10 2.37 4.68 -106.41 -0.50 1.87 15
14 C -0.45 -11.76 9.05 -38.02 -0.34 -12.11 15
15 H 0.10 2.61 8.06 -52.49 -0.42 2.18 15
16 C 0.11 2.74 4.85 -17.32 -0.08 2.65 15
17 N -0.80 -20.86 13.93 55.55 0.77 -20.09 15
18 Si 0.91 20.66 24.84 -169.99 -4.22 16.44 15
19 H -0.25 -5.38 5.85 56.52 0.33 -5.05 15
20 H -0.29 -6.40 7.11 56.52 0.40 -6.00 15
21 H -0.26 -6.11 7.11 56.52 0.40 -5.71 15
22 H 0.04 0.61 7.69 -51.93 -0.40 0.22 15
23 H 0.05 0.68 7.63 -51.93 -0.40 0.29 15
24 H 0.09 1.21 8.14 -51.93 -0.42 0.79 15
25 H 0.11 1.84 6.29 -52.48 -0.33 1.51 15
26 H 0.11 1.75 8.06 -52.49 -0.42 1.33 15
27 H 0.14 2.29 7.92 -52.49 -0.42 1.88 15
28 H 0.10 1.10 8.06 -52.49 -0.42 0.68 15
29 H 0.28 6.77 8.30 -40.82 -0.34 6.43 15
LS Contribution 267.16 15.07 4.03 4.03
Total: -1.00 -28.38 267.16 -6.39 -34.77
By element:
Atomic # 1 Polarization: 0.98 SS G_CDS: -2.44 Total: -1.46 kcal
Atomic # 6 Polarization: -16.53 SS G_CDS: -2.05 Total: -18.58 kcal
Atomic # 7 Polarization: -20.86 SS G_CDS: 0.77 Total: -20.09 kcal
Atomic # 8 Polarization: -15.08 SS G_CDS: -0.01 Total: -15.09 kcal
Atomic # 14 Polarization: 20.66 SS G_CDS: -4.22 Total: 16.44 kcal
Atomic # 16 Polarization: 2.45 SS G_CDS: -2.46 Total: -0.01 kcal
Total LS contribution 4.03 Total: 4.03 kcal
Total: -28.38 -6.39 -34.77 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000396338099.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 8.186 kcal
(2) G-P(sol) polarization free energy of solvation -28.379 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.193 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.393 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.772 kcal
(6) G-S(sol) free energy of system = (1) + (5) -26.586 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds