Wall clock time and date at job start Mon Mar 30 2020 06:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35571 * 116.99980 * 2 1 4 4 C 1.38867 * 120.13086 * 5.33895 * 3 2 1 5 5 C 1.37091 * 120.79984 * 179.97438 * 4 3 2 6 6 C 1.42111 * 121.08134 * 0.02562 * 5 4 3 7 7 C 1.40161 * 128.41265 * 179.97438 * 6 5 4 8 8 C 1.35326 * 115.31037 * 180.02562 * 7 6 5 9 9 C 1.41646 * 124.78900 * 180.02562 * 8 7 6 10 10 O 1.21410 * 119.99985 * 359.97438 * 9 8 7 11 11 S 1.75473 * 110.42432 * 0.02562 * 8 7 6 12 12 C 1.39745 * 118.84433 * 0.02562 * 6 5 4 13 13 C 1.40918 * 120.13215 * 185.05825 * 3 2 1 14 14 C 1.40746 * 120.12970 * 359.97438 * 13 3 2 15 15 H 1.08000 * 119.99573 * 136.08152 * 14 13 3 16 16 C 1.39888 * 120.00560 * 316.07554 * 14 13 3 17 17 N 1.30930 * 120.00420 * 159.07133 * 16 14 13 18 18 Si 1.86805 * 119.99869 * 339.07270 * 16 14 13 19 19 H 1.48504 * 109.47257 * 94.31654 * 18 16 14 20 20 H 1.48495 * 109.47139 * 214.31867 * 18 16 14 21 21 H 1.48497 * 109.46955 * 334.31636 * 18 16 14 22 22 H 1.08997 * 109.47530 * 295.44376 * 1 2 3 23 23 H 1.09000 * 109.47488 * 55.44464 * 1 2 3 24 24 H 1.09002 * 109.47165 * 175.44676 * 1 2 3 25 25 H 1.08005 * 119.59587 * 359.97438 * 4 3 2 26 26 H 1.08002 * 119.46011 * 179.97438 * 5 4 3 27 27 H 1.08001 * 122.34459 * 359.97438 * 7 6 5 28 28 H 1.07991 * 120.00548 * 180.02562 * 9 8 7 29 29 H 0.97002 * 120.00397 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0444 1.2079 0.0000 4 6 1.2954 2.3719 0.1118 5 6 1.9036 3.6006 0.1138 6 6 3.3151 3.7206 0.0013 7 6 4.0914 4.8875 -0.0138 8 6 5.4253 4.6935 -0.1336 9 6 6.3924 5.7278 -0.1698 10 8 6.0435 6.8881 -0.0911 11 16 5.7879 2.9798 -0.2378 12 6 4.0835 2.5590 -0.1130 13 6 3.4472 1.2871 -0.1075 14 6 4.2150 0.1124 -0.2147 15 1 5.0208 0.0575 -0.9317 16 6 3.9345 -0.9841 0.6075 17 7 4.3356 -2.1815 0.2615 18 14 2.9877 -0.7400 2.1992 19 1 1.5427 -0.9835 1.9580 20 1 3.4862 -1.6933 3.2229 21 1 3.1814 0.6509 2.6820 22 1 -0.3634 0.4415 0.9279 23 1 -0.3634 0.5829 -0.8463 24 1 -0.3633 -1.0244 -0.0816 25 1 0.2207 2.3084 0.1981 26 1 1.3000 4.4919 0.2014 27 1 3.6554 5.8726 0.0639 28 1 7.4399 5.4845 -0.2683 29 1 4.1408 -2.9418 0.8314 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396338099.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:40 Heat of formation + Delta-G solvation = -26.585865 kcal Electronic energy + Delta-G solvation = -16947.458357 eV Core-core repulsion = 14120.737378 eV Total energy + Delta-G solvation = -2826.720979 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.40025 -38.80354 -37.11807 -34.22825 -33.14014 -30.80045 -28.87513 -26.85129 -25.51862 -24.42861 -21.90612 -20.79961 -19.29519 -18.08255 -17.01856 -16.85265 -15.59309 -15.51787 -15.01000 -14.70398 -14.32812 -14.11702 -14.00441 -13.17648 -12.98739 -12.58239 -12.43430 -12.02341 -11.54688 -11.39978 -11.19902 -11.07756 -10.66277 -10.32617 -10.16917 -9.71438 -9.63433 -9.56448 -9.14851 -8.57239 -7.47556 -6.97765 -6.83849 -4.50212 0.74241 2.16013 2.24097 2.48366 2.77313 3.09945 3.18553 3.26454 3.39994 4.02835 4.32748 4.36040 4.66959 4.98573 5.48285 5.59067 5.64984 5.65979 5.71239 5.88364 5.93775 6.08755 6.28408 6.39154 6.64034 6.95884 7.02786 7.21858 7.32010 7.48672 7.65394 8.02733 8.19452 8.52693 8.70845 10.04970 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.025644 B = 0.007899 C = 0.006573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.594470 B = 3543.882203 C = 4258.871951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.293 6.293 3 C 0.026 3.974 4 C -0.154 4.154 5 C -0.155 4.155 6 C -0.098 4.098 7 C -0.012 4.012 8 C -0.327 4.327 9 C 0.414 3.586 10 O -0.480 6.480 11 S 0.128 5.872 12 C -0.145 4.145 13 C 0.097 3.903 14 C -0.451 4.451 15 H 0.095 0.905 16 C 0.107 3.893 17 N -0.800 5.800 18 Si 0.907 3.093 19 H -0.249 1.249 20 H -0.291 1.291 21 H -0.258 1.258 22 H 0.041 0.959 23 H 0.047 0.953 24 H 0.086 0.914 25 H 0.111 0.889 26 H 0.107 0.893 27 H 0.137 0.863 28 H 0.096 0.904 29 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.917 4.813 0.977 5.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.208 6.208 3 C -0.023 4.023 4 C -0.174 4.174 5 C -0.178 4.178 6 C -0.105 4.105 7 C -0.047 4.047 8 C -0.443 4.443 9 C 0.275 3.725 10 O -0.358 6.358 11 S 0.396 5.604 12 C -0.262 4.262 13 C 0.090 3.910 14 C -0.479 4.479 15 H 0.113 0.887 16 C -0.114 4.114 17 N -0.424 5.424 18 Si 0.733 3.267 19 H -0.174 1.174 20 H -0.218 1.218 21 H -0.181 1.181 22 H 0.060 0.940 23 H 0.065 0.935 24 H 0.104 0.896 25 H 0.129 0.871 26 H 0.125 0.875 27 H 0.154 0.846 28 H 0.112 0.888 29 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.486 4.148 0.864 4.490 hybrid contribution -2.038 0.654 0.775 2.276 sum -3.524 4.802 1.639 6.178 Atomic orbital electron populations 1.22804 0.81189 1.02489 1.00106 1.86151 1.18693 1.26758 1.89168 1.18904 0.91525 0.83561 1.08348 1.20617 0.98543 0.92463 1.05737 1.20141 0.91376 0.96184 1.10069 1.17988 0.94490 0.91127 1.06862 1.20708 0.91895 0.98741 0.93396 1.23812 0.99089 1.00790 1.20617 1.21726 0.93515 0.86585 0.70625 1.90526 1.85142 1.22507 1.37582 1.83694 1.05393 0.94992 1.76360 1.22936 0.94953 0.96568 1.11746 1.16301 0.88563 0.90923 0.95166 1.19033 1.15488 0.94487 1.18857 0.88689 1.25897 0.92502 0.93479 0.99489 1.69746 1.36984 0.99638 1.36009 0.86336 0.81259 0.79583 0.79552 1.17426 1.21804 1.18143 0.94029 0.93451 0.89577 0.87078 0.87478 0.84567 0.88794 0.90476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 9.39 101.05 0.95 1.43 15 2 O -0.29 -6.42 5.96 -18.41 -0.11 -6.53 15 3 C 0.03 0.59 5.20 -38.34 -0.20 0.40 15 4 C -0.15 -3.04 8.97 -39.76 -0.36 -3.39 15 5 C -0.16 -3.00 10.06 -38.51 -0.39 -3.39 15 6 C -0.10 -2.04 5.86 -107.13 -0.63 -2.66 15 7 C -0.01 -0.22 9.80 -39.90 -0.39 -0.61 15 8 C -0.33 -5.79 6.17 -39.32 -0.24 -6.03 15 9 C 0.41 6.40 11.46 32.03 0.37 6.77 15 10 O -0.48 -8.66 17.45 5.44 0.09 -8.56 15 11 S 0.13 2.45 22.93 -107.50 -2.46 -0.01 15 12 C -0.15 -3.27 6.37 -37.49 -0.24 -3.51 15 13 C 0.10 2.37 4.68 -106.41 -0.50 1.87 15 14 C -0.45 -11.76 9.05 -38.02 -0.34 -12.11 15 15 H 0.10 2.61 8.06 -52.49 -0.42 2.18 15 16 C 0.11 2.74 4.85 -17.32 -0.08 2.65 15 17 N -0.80 -20.86 13.93 55.55 0.77 -20.09 15 18 Si 0.91 20.66 24.84 -169.99 -4.22 16.44 15 19 H -0.25 -5.38 5.85 56.52 0.33 -5.05 15 20 H -0.29 -6.40 7.11 56.52 0.40 -6.00 15 21 H -0.26 -6.11 7.11 56.52 0.40 -5.71 15 22 H 0.04 0.61 7.69 -51.93 -0.40 0.22 15 23 H 0.05 0.68 7.63 -51.93 -0.40 0.29 15 24 H 0.09 1.21 8.14 -51.93 -0.42 0.79 15 25 H 0.11 1.84 6.29 -52.48 -0.33 1.51 15 26 H 0.11 1.75 8.06 -52.49 -0.42 1.33 15 27 H 0.14 2.29 7.92 -52.49 -0.42 1.88 15 28 H 0.10 1.10 8.06 -52.49 -0.42 0.68 15 29 H 0.28 6.77 8.30 -40.82 -0.34 6.43 15 LS Contribution 267.16 15.07 4.03 4.03 Total: -1.00 -28.38 267.16 -6.39 -34.77 By element: Atomic # 1 Polarization: 0.98 SS G_CDS: -2.44 Total: -1.46 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: -2.05 Total: -18.58 kcal Atomic # 7 Polarization: -20.86 SS G_CDS: 0.77 Total: -20.09 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.01 Total: -15.09 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.22 Total: 16.44 kcal Atomic # 16 Polarization: 2.45 SS G_CDS: -2.46 Total: -0.01 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -28.38 -6.39 -34.77 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396338099.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.186 kcal (2) G-P(sol) polarization free energy of solvation -28.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds