Wall clock time and date at job start Mon Mar 30 2020 06:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35571 * 116.99980 * 2 1 4 4 C 1.38867 * 120.13086 * 5.33895 * 3 2 1 5 5 C 1.37091 * 120.79984 * 179.97438 * 4 3 2 6 6 C 1.42111 * 121.08134 * 0.02562 * 5 4 3 7 7 C 1.40161 * 128.41265 * 179.97438 * 6 5 4 8 8 C 1.35326 * 115.31037 * 180.02562 * 7 6 5 9 9 C 1.41646 * 124.78900 * 180.02562 * 8 7 6 10 10 O 1.21410 * 119.99985 * 359.97438 * 9 8 7 11 11 S 1.75473 * 110.42432 * 0.02562 * 8 7 6 12 12 C 1.39745 * 118.84433 * 0.02562 * 6 5 4 13 13 C 1.40918 * 120.13215 * 185.05825 * 3 2 1 14 14 C 1.40746 * 120.12970 * 359.97438 * 13 3 2 15 15 H 1.08000 * 119.99573 * 136.08152 * 14 13 3 16 16 C 1.39888 * 120.00560 * 316.07554 * 14 13 3 17 17 N 1.30930 * 120.00420 * 159.07133 * 16 14 13 18 18 Si 1.86805 * 119.99869 * 339.07270 * 16 14 13 19 19 H 1.48504 * 109.47257 * 94.31654 * 18 16 14 20 20 H 1.48495 * 109.47139 * 214.31867 * 18 16 14 21 21 H 1.48497 * 109.46955 * 334.31636 * 18 16 14 22 22 H 1.08997 * 109.47530 * 295.44376 * 1 2 3 23 23 H 1.09000 * 109.47488 * 55.44464 * 1 2 3 24 24 H 1.09002 * 109.47165 * 175.44676 * 1 2 3 25 25 H 1.08005 * 119.59587 * 359.97438 * 4 3 2 26 26 H 1.08002 * 119.46011 * 179.97438 * 5 4 3 27 27 H 1.08001 * 122.34459 * 359.97438 * 7 6 5 28 28 H 1.07991 * 120.00548 * 180.02562 * 9 8 7 29 29 H 0.97002 * 120.00397 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0444 1.2079 0.0000 4 6 1.2954 2.3719 0.1118 5 6 1.9036 3.6006 0.1138 6 6 3.3151 3.7206 0.0013 7 6 4.0914 4.8875 -0.0138 8 6 5.4253 4.6935 -0.1336 9 6 6.3924 5.7278 -0.1698 10 8 6.0435 6.8881 -0.0911 11 16 5.7879 2.9798 -0.2378 12 6 4.0835 2.5590 -0.1130 13 6 3.4472 1.2871 -0.1075 14 6 4.2150 0.1124 -0.2147 15 1 5.0208 0.0575 -0.9317 16 6 3.9345 -0.9841 0.6075 17 7 4.3356 -2.1815 0.2615 18 14 2.9877 -0.7400 2.1992 19 1 1.5427 -0.9835 1.9580 20 1 3.4862 -1.6933 3.2229 21 1 3.1814 0.6509 2.6820 22 1 -0.3634 0.4415 0.9279 23 1 -0.3634 0.5829 -0.8463 24 1 -0.3633 -1.0244 -0.0816 25 1 0.2207 2.3084 0.1981 26 1 1.3000 4.4919 0.2014 27 1 3.6554 5.8726 0.0639 28 1 7.4399 5.4845 -0.2683 29 1 4.1408 -2.9418 0.8314 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396338099.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:39 Heat of formation + Delta-G solvation = -43.812000 kcal Electronic energy + Delta-G solvation = -16948.205338 eV Core-core repulsion = 14120.737378 eV Total energy + Delta-G solvation = -2827.467961 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.97082 -40.20396 -38.65558 -35.90323 -34.77321 -32.49728 -30.37290 -28.20232 -27.25435 -25.86941 -23.49569 -22.40753 -20.76069 -19.75157 -18.63730 -18.30638 -17.20735 -17.04478 -16.47227 -16.27949 -15.79153 -15.54300 -15.48928 -14.93191 -14.52225 -14.13514 -13.99857 -13.63749 -13.16095 -13.00749 -12.66783 -12.61771 -12.32096 -11.95802 -11.82318 -11.24098 -11.16921 -10.98061 -10.88906 -10.23314 -9.04519 -8.79525 -8.48128 -6.36760 -0.70879 0.50311 0.71821 0.96814 1.22601 1.32201 1.38614 1.47273 1.95226 2.22875 2.64632 2.82825 3.21559 3.45473 4.05720 4.20751 4.29361 4.35569 4.46184 4.48205 4.59507 4.71512 4.75262 4.91222 5.05346 5.32527 5.38918 5.57696 5.66405 5.87780 6.20616 6.38144 6.40587 6.79329 6.98985 8.29008 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.025644 B = 0.007899 C = 0.006573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.594470 B = 3543.882203 C = 4258.871951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.323 6.323 3 C 0.030 3.970 4 C -0.162 4.162 5 C -0.127 4.127 6 C -0.117 4.117 7 C -0.020 4.020 8 C -0.316 4.316 9 C 0.423 3.577 10 O -0.500 6.500 11 S 0.127 5.873 12 C -0.171 4.171 13 C 0.065 3.935 14 C -0.488 4.488 15 H 0.056 0.944 16 C 0.077 3.923 17 N -0.851 5.851 18 Si 0.949 3.051 19 H -0.229 1.229 20 H -0.285 1.285 21 H -0.275 1.275 22 H 0.060 0.940 23 H 0.067 0.933 24 H 0.104 0.896 25 H 0.151 0.849 26 H 0.149 0.851 27 H 0.159 0.841 28 H 0.143 0.857 29 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.784 7.496 1.620 9.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.238 6.238 3 C -0.020 4.020 4 C -0.182 4.182 5 C -0.148 4.148 6 C -0.124 4.124 7 C -0.054 4.054 8 C -0.433 4.433 9 C 0.285 3.715 10 O -0.378 6.378 11 S 0.394 5.606 12 C -0.288 4.288 13 C 0.058 3.942 14 C -0.518 4.518 15 H 0.074 0.926 16 C -0.138 4.138 17 N -0.478 5.478 18 Si 0.774 3.226 19 H -0.153 1.153 20 H -0.212 1.212 21 H -0.199 1.199 22 H 0.079 0.921 23 H 0.085 0.915 24 H 0.122 0.878 25 H 0.169 0.831 26 H 0.166 0.834 27 H 0.177 0.823 28 H 0.159 0.841 29 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.377 6.843 1.503 7.778 hybrid contribution -1.563 0.151 0.502 1.649 sum -4.940 6.994 2.005 8.794 Atomic orbital electron populations 1.23199 0.78283 1.04492 1.01901 1.86114 1.21794 1.26874 1.88976 1.19190 0.91295 0.84903 1.06564 1.21045 1.00494 0.91426 1.05221 1.20788 0.91211 0.97652 1.05194 1.18384 0.95449 0.91195 1.07352 1.20890 0.92084 0.98931 0.93496 1.24185 0.99658 1.00290 1.19131 1.22261 0.94777 0.85304 0.69121 1.90533 1.85669 1.23215 1.38367 1.83694 1.04158 0.96347 1.76360 1.23295 0.96861 0.96828 1.11829 1.16517 0.89804 0.91020 0.96831 1.18831 1.16255 0.96423 1.20261 0.92572 1.26396 0.93158 0.93097 1.01140 1.69787 1.40307 1.00269 1.37484 0.85714 0.81565 0.78304 0.77056 1.15319 1.21202 1.19944 0.92140 0.91468 0.87812 0.83131 0.83361 0.82330 0.84103 0.90124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 9.39 113.37 1.06 1.53 15 2 O -0.32 -13.75 5.96 -88.78 -0.53 -14.28 15 3 C 0.03 1.33 5.20 23.08 0.12 1.45 15 4 C -0.16 -5.81 8.97 22.15 0.20 -5.61 15 5 C -0.13 -4.37 10.06 22.96 0.23 -4.14 15 6 C -0.12 -4.56 5.86 -21.49 -0.13 -4.69 15 7 C -0.02 -0.67 9.80 22.06 0.22 -0.46 15 8 C -0.32 -10.43 6.17 22.44 0.14 -10.29 15 9 C 0.42 11.65 11.46 68.66 0.79 12.44 15 10 O -0.50 -16.35 17.45 -3.43 -0.06 -16.41 15 11 S 0.13 4.85 22.93 -56.49 -1.30 3.55 15 12 C -0.17 -7.69 6.37 23.62 0.15 -7.54 15 13 C 0.06 3.21 4.68 -21.02 -0.10 3.11 15 14 C -0.49 -26.99 9.05 23.28 0.21 -26.78 15 15 H 0.06 3.38 8.06 -2.91 -0.02 3.36 15 16 C 0.08 4.13 4.85 85.23 0.41 4.54 15 17 N -0.85 -47.06 13.93 21.82 0.30 -46.75 15 18 Si 0.95 43.18 24.84 68.60 1.70 44.89 15 19 H -0.23 -9.48 5.85 99.48 0.58 -8.89 15 20 H -0.28 -12.40 7.11 99.48 0.71 -11.70 15 21 H -0.27 -13.01 7.11 99.48 0.71 -12.30 15 22 H 0.06 1.54 7.69 -2.39 -0.02 1.52 15 23 H 0.07 1.68 7.63 -2.39 -0.02 1.67 15 24 H 0.10 2.64 8.14 -2.39 -0.02 2.62 15 25 H 0.15 4.15 6.29 -2.91 -0.02 4.14 15 26 H 0.15 3.92 8.06 -2.91 -0.02 3.89 15 27 H 0.16 4.69 7.92 -2.91 -0.02 4.66 15 28 H 0.14 2.69 8.06 -2.91 -0.02 2.67 15 29 H 0.29 14.49 8.30 -92.71 -0.77 13.72 15 Total: -1.00 -64.59 267.16 4.49 -60.10 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: 1.06 Total: 5.35 kcal Atomic # 6 Polarization: -39.75 SS G_CDS: 3.31 Total: -36.44 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: 0.30 Total: -46.75 kcal Atomic # 8 Polarization: -30.10 SS G_CDS: -0.59 Total: -30.69 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 1.70 Total: 44.89 kcal Atomic # 16 Polarization: 4.85 SS G_CDS: -1.30 Total: 3.55 kcal Total: -64.59 4.49 -60.10 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396338099.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.289 kcal (2) G-P(sol) polarization free energy of solvation -64.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds