Wall clock time and date at job start Mon Mar 30 2020 06:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35581 * 117.00139 * 2 1 4 4 C 1.36705 * 122.48782 * 270.15132 * 3 2 1 5 5 C 1.40900 * 124.86481 * 0.03467 * 4 3 2 6 6 O 1.21493 * 120.00257 * 180.22065 * 5 4 3 7 7 S 1.75472 * 110.27616 * 180.24755 * 4 3 2 8 8 C 1.76042 * 91.76615 * 359.78544 * 7 4 3 9 9 C 1.39939 * 130.20558 * 179.97438 * 8 7 4 10 10 C 1.37991 * 121.52774 * 180.02562 * 9 8 7 11 11 C 1.37720 * 121.13023 * 359.97438 * 10 9 8 12 12 C 1.40325 * 120.12631 * 0.02562 * 11 10 9 13 13 C 1.40416 * 120.39246 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99570 * 207.16641 * 13 12 11 15 15 C 1.40190 * 120.00138 * 27.17032 * 13 12 11 16 16 N 1.30698 * 119.99935 * 14.12038 * 15 13 12 17 17 Si 1.86801 * 120.00026 * 194.12345 * 15 13 12 18 18 H 1.48504 * 109.47192 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47110 * 119.99742 * 17 15 13 20 20 H 1.48502 * 109.47172 * 239.99595 * 17 15 13 21 21 C 1.39701 * 122.48412 * 90.00255 * 3 2 1 22 22 H 1.09007 * 109.46551 * 299.99866 * 1 2 3 23 23 H 1.08990 * 109.47109 * 59.99425 * 1 2 3 24 24 H 1.08998 * 109.46976 * 180.02562 * 1 2 3 25 25 H 1.07997 * 119.99300 * 0.22230 * 5 4 3 26 26 H 1.08001 * 119.23679 * 0.03801 * 9 8 7 27 27 H 1.07992 * 119.43674 * 180.02562 * 10 9 8 28 28 H 1.07999 * 119.93770 * 179.97438 * 11 10 9 29 29 H 0.97003 * 119.99962 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0445 1.2080 0.0000 4 6 2.3752 1.8636 -1.1531 5 6 2.1252 1.3821 -2.4535 6 8 2.4612 2.0381 -3.4193 7 16 3.1610 3.3880 -0.7820 8 6 3.0169 3.1033 0.9493 9 6 3.4249 3.8912 2.0314 10 6 3.2198 3.4884 3.3352 11 6 2.6027 2.2909 3.6217 12 6 2.1700 1.4549 2.5811 13 6 1.5397 0.2331 2.8668 14 1 1.5984 -0.5827 2.1615 15 6 0.8343 0.0722 4.0676 16 7 0.5252 1.1173 4.7890 17 14 0.3361 -1.6359 4.6365 18 1 0.8014 -2.6421 3.6484 19 1 0.9527 -1.9170 5.9578 20 1 -1.1425 -1.7064 4.7552 21 6 2.3852 1.8765 1.1784 22 1 -0.3633 0.5139 0.8901 23 1 -0.3633 0.5139 -0.8898 24 1 -0.3633 -1.0277 0.0005 25 1 1.6348 0.4298 -2.5915 26 1 3.9115 4.8366 1.8418 27 1 3.5480 4.1233 4.1447 28 1 2.4523 1.9944 4.6492 29 1 0.0374 1.0060 5.6200 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396338416.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:11 Heat of formation + Delta-G solvation = -38.564673 kcal Electronic energy + Delta-G solvation = -17103.447375 eV Core-core repulsion = 14276.206956 eV Total energy + Delta-G solvation = -2827.240419 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.28768 -37.89531 -37.01456 -34.54934 -32.95613 -30.15250 -28.98047 -26.88359 -25.85048 -23.54292 -22.04151 -20.38480 -19.62227 -18.09330 -16.59517 -16.39741 -15.67581 -15.41189 -15.09131 -14.49000 -14.22123 -13.50802 -13.42527 -13.42000 -12.92767 -12.53583 -12.30448 -11.85542 -11.62595 -11.42475 -11.29781 -10.85212 -10.71483 -10.22394 -9.96447 -9.82434 -9.63601 -9.33263 -9.05679 -8.37019 -7.60282 -7.37218 -6.87647 -4.79000 0.95349 2.40394 2.46986 2.72224 2.76559 2.83754 2.87607 2.94164 3.49488 3.58031 4.09714 4.48546 5.15786 5.31019 5.66952 5.74374 5.85860 5.97687 6.06448 6.18622 6.38038 6.47861 6.64465 6.69215 6.73369 6.95741 7.22565 7.50616 7.58975 7.71529 7.98237 8.09686 8.18560 8.25345 8.39133 9.48043 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.022299 B = 0.008457 C = 0.006323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.362608 B = 3310.002549 C = 4427.092282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.326 6.326 3 C 0.243 3.757 4 C -0.413 4.413 5 C 0.411 3.589 6 O -0.510 6.510 7 S 0.079 5.921 8 C -0.050 4.050 9 C -0.231 4.231 10 C -0.049 4.049 11 C -0.189 4.189 12 C 0.156 3.844 13 C -0.391 4.391 14 H 0.107 0.893 15 C 0.065 3.935 16 N -0.747 5.747 17 Si 0.919 3.081 18 H -0.251 1.251 19 H -0.265 1.265 20 H -0.267 1.267 21 C -0.229 4.229 22 H 0.059 0.941 23 H 0.038 0.962 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.097 0.903 27 H 0.101 0.899 28 H 0.126 0.874 29 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.100 -2.741 0.884 3.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.243 6.243 3 C 0.186 3.814 4 C -0.529 4.529 5 C 0.278 3.722 6 O -0.392 6.392 7 S 0.342 5.658 8 C -0.165 4.165 9 C -0.259 4.259 10 C -0.070 4.070 11 C -0.211 4.211 12 C 0.150 3.850 13 C -0.416 4.416 14 H 0.125 0.875 15 C -0.160 4.160 16 N -0.368 5.368 17 Si 0.741 3.259 18 H -0.174 1.174 19 H -0.189 1.189 20 H -0.192 1.192 21 C -0.233 4.233 22 H 0.078 0.922 23 H 0.057 0.943 24 H 0.108 0.892 25 H 0.105 0.895 26 H 0.116 0.884 27 H 0.119 0.881 28 H 0.144 0.856 29 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.433 -1.420 -0.412 2.059 hybrid contribution -1.015 -1.578 1.406 2.344 sum -2.448 -2.998 0.994 3.996 Atomic orbital electron populations 1.22905 0.78522 1.02724 1.01055 1.85760 1.19901 1.24414 1.94192 1.18055 0.89952 0.83112 0.90262 1.23292 1.26230 1.04671 0.98680 1.21160 0.76043 0.89237 0.85778 1.90506 1.45848 1.59547 1.43327 1.83617 1.65474 1.18794 0.97880 1.22418 1.00454 0.97370 0.96300 1.19631 1.14144 1.01229 0.90899 1.20577 0.96024 0.95835 0.94596 1.21157 1.04586 0.96111 0.99203 1.18493 0.87149 0.91738 0.87603 1.20257 1.21524 0.98707 1.01155 0.87534 1.26341 0.94364 0.99909 0.95372 1.69765 1.23799 1.31913 1.11353 0.86028 0.79199 0.80642 0.79989 1.17368 1.18950 1.19179 1.19162 1.14154 0.96355 0.93647 0.92188 0.94288 0.89203 0.89545 0.88437 0.88129 0.85607 0.89481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.69 10.59 101.05 1.07 1.76 15 2 O -0.33 -6.48 8.09 -18.44 -0.15 -6.63 15 3 C 0.24 5.36 5.78 -39.59 -0.23 5.13 15 4 C -0.41 -8.93 6.19 -39.13 -0.24 -9.18 15 5 C 0.41 8.23 11.14 31.74 0.35 8.58 15 6 O -0.51 -11.45 17.60 5.37 0.09 -11.36 15 7 S 0.08 1.70 22.91 -107.50 -2.46 -0.76 15 8 C -0.05 -1.14 6.47 -38.33 -0.25 -1.38 15 9 C -0.23 -4.98 10.02 -39.04 -0.39 -5.38 15 10 C -0.05 -1.03 9.95 -39.86 -0.40 -1.43 15 11 C -0.19 -4.31 8.64 -38.99 -0.34 -4.64 15 12 C 0.16 3.72 5.74 -104.27 -0.60 3.12 15 13 C -0.39 -8.73 7.69 -38.03 -0.29 -9.03 15 14 H 0.11 2.35 6.13 -52.48 -0.32 2.03 15 15 C 0.06 1.33 5.19 -17.30 -0.09 1.24 15 16 N -0.75 -15.87 10.91 55.56 0.61 -15.26 15 17 Si 0.92 15.33 29.58 -169.99 -5.03 10.30 15 18 H -0.25 -4.20 7.11 56.52 0.40 -3.80 15 19 H -0.26 -4.38 7.11 56.52 0.40 -3.98 15 20 H -0.27 -4.37 7.11 56.52 0.40 -3.96 15 21 C -0.23 -5.41 6.01 -104.72 -0.63 -6.04 15 22 H 0.06 1.05 7.62 -51.93 -0.40 0.66 15 23 H 0.04 0.57 8.14 -51.93 -0.42 0.14 15 24 H 0.09 1.16 8.14 -51.93 -0.42 0.74 15 25 H 0.09 1.46 7.92 -52.49 -0.42 1.04 15 26 H 0.10 1.89 8.06 -52.49 -0.42 1.46 15 27 H 0.10 1.81 8.06 -52.49 -0.42 1.39 15 28 H 0.13 2.86 6.20 -52.49 -0.33 2.54 15 29 H 0.29 5.52 8.29 -40.82 -0.34 5.18 15 LS Contribution 272.40 15.07 4.10 4.10 Total: -1.00 -26.25 272.40 -7.15 -33.40 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -2.28 Total: 3.44 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: -2.03 Total: -17.24 kcal Atomic # 7 Polarization: -15.87 SS G_CDS: 0.61 Total: -15.26 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: -0.05 Total: -17.99 kcal Atomic # 14 Polarization: 15.33 SS G_CDS: -5.03 Total: 10.30 kcal Atomic # 16 Polarization: 1.70 SS G_CDS: -2.46 Total: -0.76 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -26.25 -7.15 -33.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396338416.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.160 kcal (2) G-P(sol) polarization free energy of solvation -26.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds