Wall clock time and date at job start Mon Mar 30 2020 06:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35921 * 116.99788 * 2 1 4 4 C 1.38399 * 119.84840 * 0.02619 * 3 2 1 5 5 C 1.39714 * 120.74426 * 179.97438 * 4 3 2 6 6 S 1.75822 * 130.07070 * 179.97438 * 5 4 3 7 7 C 1.69998 * 93.19645 * 179.46293 * 6 5 4 8 8 C 1.36657 * 111.88260 * 0.45438 * 7 6 5 9 9 C 1.40938 * 123.28808 * 179.52300 * 8 7 6 10 10 H 1.08001 * 119.99842 * 139.08536 * 9 8 7 11 11 C 1.39684 * 120.00324 * 319.08618 * 9 8 7 12 12 N 1.31093 * 119.99550 * 4.63774 * 11 9 8 13 13 Si 1.86794 * 120.00474 * 184.63810 * 11 9 8 14 14 H 1.48500 * 109.47014 * 59.99747 * 13 11 9 15 15 H 1.48493 * 109.47520 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46958 * 300.00205 * 13 11 9 17 17 C 1.39293 * 119.76524 * 359.73294 * 5 4 3 18 18 C 1.42188 * 119.19463 * 0.50920 * 17 5 4 19 19 C 1.46785 * 119.99830 * 179.76564 * 18 17 5 20 20 O 1.21317 * 119.99250 * 173.92432 * 19 18 17 21 21 C 1.38565 * 119.84802 * 179.97438 * 3 2 1 22 22 H 1.09000 * 109.47442 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47630 * 299.99764 * 1 2 3 24 24 H 1.09007 * 109.47207 * 59.99781 * 1 2 3 25 25 H 1.07999 * 119.62759 * 359.97438 * 4 3 2 26 26 H 1.08006 * 124.05891 * 179.97438 * 7 6 5 27 27 H 0.97000 * 119.99660 * 179.97438 * 12 11 9 28 28 H 1.07991 * 120.00438 * 354.20310 * 19 18 17 29 29 H 1.08000 * 120.00037 * 0.04689 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2891 2.3698 0.0005 5 6 1.9038 3.6244 0.0011 6 16 1.1935 5.2328 0.0012 7 6 2.7078 6.0051 0.0179 8 6 3.7378 5.1070 0.0134 9 6 5.0951 5.4865 0.0151 10 1 5.8056 4.9482 0.6250 11 6 5.5215 6.5588 -0.7720 12 7 4.6464 7.2691 -1.4414 13 14 7.3386 6.9805 -0.8708 14 1 8.0878 5.8180 -1.4119 15 1 7.5272 8.1511 -1.7647 16 1 7.8452 7.3077 0.4861 17 6 3.2939 3.7134 0.0067 18 6 4.0654 2.5191 0.0008 19 6 5.5314 2.5923 0.0014 20 8 6.1892 1.5785 0.1076 21 6 3.4299 1.2800 0.0005 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 0.2112 2.3033 0.0006 26 1 2.8401 7.0771 0.0230 27 1 4.9425 8.0140 -1.9877 28 1 6.0243 3.5490 -0.0882 29 1 4.0158 0.3727 0.0002 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396338420.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:26 Heat of formation + Delta-G solvation = -48.982581 kcal Electronic energy + Delta-G solvation = -16814.996617 eV Core-core repulsion = 13987.304444 eV Total energy + Delta-G solvation = -2827.692174 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.30571 -39.91627 -38.68053 -36.25045 -33.85771 -32.25465 -30.07702 -28.50690 -27.61245 -25.35294 -24.03067 -22.05482 -21.44436 -19.47205 -18.59135 -17.77070 -17.24403 -16.69498 -16.64718 -16.39076 -15.88787 -15.67441 -15.26413 -14.98550 -14.30841 -14.16540 -13.82913 -13.32264 -13.26298 -12.95496 -12.67426 -12.63574 -12.43033 -12.14865 -11.77785 -11.44707 -11.22120 -10.99707 -10.55534 -10.20138 -8.95743 -8.50961 -8.36764 -6.34657 -0.53456 0.16780 0.96643 1.34883 1.43508 1.44220 1.52704 1.79362 1.88224 2.27385 2.30946 2.74890 3.21325 3.49676 3.90905 4.04009 4.13620 4.32789 4.39259 4.43742 4.56120 4.72097 4.79356 5.06915 5.11494 5.15021 5.32265 5.45249 5.68146 5.96652 6.37579 6.39657 6.49089 6.82182 6.95579 8.49925 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.022650 B = 0.007650 C = 0.005843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.894205 B = 3659.252016 C = 4790.714247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.325 6.325 3 C 0.115 3.885 4 C -0.142 4.142 5 C -0.140 4.140 6 S 0.096 5.904 7 C -0.340 4.340 8 C 0.061 3.939 9 C -0.486 4.486 10 H 0.090 0.910 11 C 0.034 3.966 12 N -0.845 5.845 13 Si 0.971 3.029 14 H -0.258 1.258 15 H -0.276 1.276 16 H -0.259 1.259 17 C -0.074 4.074 18 C -0.130 4.130 19 C 0.380 3.620 20 O -0.498 6.498 21 C -0.101 4.101 22 H 0.127 0.873 23 H 0.065 0.935 24 H 0.063 0.937 25 H 0.159 0.841 26 H 0.134 0.866 27 H 0.281 0.719 28 H 0.140 0.860 29 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.697 -7.249 1.359 9.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.239 6.239 3 C 0.067 3.933 4 C -0.167 4.167 5 C -0.256 4.256 6 S 0.359 5.641 7 C -0.475 4.475 8 C 0.051 3.949 9 C -0.519 4.519 10 H 0.107 0.893 11 C -0.178 4.178 12 N -0.474 5.474 13 Si 0.793 3.207 14 H -0.182 1.182 15 H -0.201 1.201 16 H -0.183 1.183 17 C -0.084 4.084 18 C -0.132 4.132 19 C 0.243 3.757 20 O -0.375 6.375 21 C -0.123 4.123 22 H 0.145 0.855 23 H 0.083 0.917 24 H 0.082 0.918 25 H 0.176 0.824 26 H 0.152 0.848 27 H 0.091 0.909 28 H 0.155 0.845 29 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -7.741 -7.102 1.254 10.580 hybrid contribution 1.873 0.482 -0.297 1.957 sum -5.868 -6.621 0.957 8.898 Atomic orbital electron populations 1.23415 0.76269 1.05942 1.02344 1.86068 1.23627 1.25258 1.88972 1.18435 0.91504 0.84591 0.98738 1.20832 1.00788 0.88843 1.06191 1.22648 0.96645 0.98793 1.07500 1.81581 1.09119 0.92990 1.80361 1.24496 0.94742 1.02569 1.25711 1.17578 0.95079 0.87150 0.95069 1.19202 0.92914 1.14398 1.25408 0.89257 1.26506 1.03562 0.94293 0.93434 1.69938 1.37288 1.16015 1.24114 0.85389 0.77322 0.78679 0.79344 1.18220 1.20051 1.18296 1.19931 0.92495 0.94104 1.01873 1.20476 0.96309 0.91597 1.04852 1.25102 0.88300 0.94334 0.67977 1.90405 1.68394 1.41299 1.37360 1.20534 0.92242 0.97413 1.02088 0.85513 0.91656 0.91805 0.82383 0.84827 0.90896 0.84457 0.83901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.25 9.80 113.37 1.11 1.36 15 2 O -0.33 -9.00 10.49 -92.66 -0.97 -9.97 15 3 C 0.11 3.82 6.67 22.39 0.15 3.97 15 4 C -0.14 -4.72 9.06 22.67 0.21 -4.51 15 5 C -0.14 -5.71 6.43 22.88 0.15 -5.56 15 6 S 0.10 3.88 22.97 -56.49 -1.30 2.58 15 7 C -0.34 -16.84 9.48 67.45 0.64 -16.20 15 8 C 0.06 3.05 5.53 -20.90 -0.12 2.94 15 9 C -0.49 -24.16 7.34 23.28 0.17 -23.99 15 10 H 0.09 4.15 5.85 -2.91 -0.02 4.13 15 11 C 0.03 1.66 5.45 85.15 0.46 2.13 15 12 N -0.85 -43.54 11.37 21.79 0.25 -43.29 15 13 Si 0.97 37.42 29.56 68.60 2.03 39.44 15 14 H -0.26 -9.63 7.11 99.48 0.71 -8.92 15 15 H -0.28 -10.39 7.11 99.48 0.71 -9.68 15 16 H -0.26 -9.65 7.11 99.48 0.71 -8.94 15 17 C -0.07 -3.36 6.02 -19.96 -0.12 -3.48 15 18 C -0.13 -5.42 5.91 -19.82 -0.12 -5.54 15 19 C 0.38 15.73 10.86 70.06 0.76 16.49 15 20 O -0.50 -21.30 17.15 -3.15 -0.05 -21.36 15 21 C -0.10 -3.77 9.50 22.59 0.21 -3.56 15 22 H 0.13 1.46 8.14 -2.39 -0.02 1.44 15 23 H 0.06 1.02 7.64 -2.39 -0.02 1.00 15 24 H 0.06 1.02 7.65 -2.38 -0.02 1.00 15 25 H 0.16 4.06 6.22 -2.91 -0.02 4.04 15 26 H 0.13 7.14 7.06 -2.91 -0.02 7.12 15 27 H 0.28 13.42 8.30 -92.71 -0.77 12.66 15 28 H 0.14 5.71 4.38 -2.92 -0.01 5.70 15 29 H 0.14 5.03 7.63 -2.91 -0.02 5.01 15 Total: -1.00 -58.66 267.77 4.67 -54.00 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: 1.20 Total: 14.55 kcal Atomic # 6 Polarization: -39.46 SS G_CDS: 3.51 Total: -35.95 kcal Atomic # 7 Polarization: -43.54 SS G_CDS: 0.25 Total: -43.29 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -1.03 Total: -31.33 kcal Atomic # 14 Polarization: 37.42 SS G_CDS: 2.03 Total: 39.44 kcal Atomic # 16 Polarization: 3.88 SS G_CDS: -1.30 Total: 2.58 kcal Total: -58.66 4.67 -54.00 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396338420.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.012 kcal (2) G-P(sol) polarization free energy of solvation -58.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds