Wall clock time and date at job start Mon Mar 30 2020 06:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35462 * 116.99978 * 2 1 4 4 C 1.33871 * 124.70631 * 180.02562 * 3 2 1 5 5 C 1.39544 * 115.65834 * 180.02562 * 4 3 2 6 6 C 1.40153 * 112.87077 * 0.02562 * 5 4 3 7 7 C 1.39620 * 120.67997 * 180.02562 * 6 5 4 8 8 C 1.37444 * 122.55666 * 0.02562 * 7 6 5 9 9 C 1.39745 * 120.91877 * 359.69831 * 8 7 6 10 10 C 1.46152 * 120.47587 * 180.27718 * 9 8 7 11 11 O 1.21412 * 120.00002 * 185.16185 * 10 9 8 12 12 C 1.46536 * 119.03955 * 0.56451 * 9 8 7 13 13 C 1.39635 * 120.73411 * 179.73379 * 12 9 8 14 14 H 1.07997 * 119.99519 * 42.21011 * 13 12 9 15 15 C 1.40445 * 119.99812 * 222.20653 * 13 12 9 16 16 N 1.30572 * 120.00058 * 27.64283 * 15 13 12 17 17 Si 1.86797 * 119.99802 * 207.63985 * 15 13 12 18 18 H 1.48505 * 109.47394 * 180.02562 * 17 15 13 19 19 H 1.48501 * 109.47387 * 300.00388 * 17 15 13 20 20 H 1.48508 * 109.47342 * 60.00300 * 17 15 13 21 21 S 1.75470 * 124.70527 * 0.02822 * 3 2 1 22 22 H 1.09002 * 109.47026 * 299.99580 * 1 2 3 23 23 H 1.09004 * 109.47071 * 59.99561 * 1 2 3 24 24 H 1.09002 * 109.47083 * 179.97438 * 1 2 3 25 25 H 1.08003 * 122.16501 * 0.04610 * 4 3 2 26 26 H 1.08003 * 118.71757 * 179.97438 * 7 6 5 27 27 H 1.07997 * 119.54013 * 180.02562 * 8 7 6 28 28 H 1.07997 * 120.00595 * 5.16325 * 10 9 8 29 29 H 0.96994 * 120.00320 * 3.22115 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0440 1.2070 0.0000 4 6 3.3707 1.3865 -0.0005 5 6 3.8008 2.7140 0.0002 6 6 2.7402 3.6302 0.0018 7 6 2.9860 5.0046 0.0021 8 6 4.2566 5.5287 0.0004 9 6 5.3776 4.6942 0.0044 10 6 6.7243 5.2619 0.0086 11 8 7.6908 4.5327 -0.0825 12 6 5.1831 3.2418 -0.0020 13 6 6.2780 2.3752 -0.0037 14 1 7.1303 2.5807 0.6269 15 6 6.2709 1.2364 -0.8256 16 7 5.5770 1.2339 -1.9317 17 14 7.2541 -0.2747 -0.3364 18 1 7.0815 -1.3320 -1.3648 19 1 8.6916 0.0828 -0.2311 20 1 6.7713 -0.7760 0.9755 21 16 1.2123 2.7520 0.0007 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 4.0630 0.5576 -0.0017 26 1 2.1450 5.6822 0.0030 27 1 4.3906 6.6003 0.0011 28 1 6.8599 6.3300 0.0927 29 1 5.1043 2.0340 -2.2096 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396339157.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:56 Heat of formation + Delta-G solvation = -35.774368 kcal Electronic energy + Delta-G solvation = -17025.699938 eV Core-core repulsion = 14198.580516 eV Total energy + Delta-G solvation = -2827.119423 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.72803 -38.10735 -36.89316 -34.26268 -33.47442 -29.78135 -28.60916 -26.83872 -25.14094 -23.50105 -22.02801 -20.68574 -19.11328 -18.68900 -17.10839 -15.78053 -15.58289 -15.43860 -15.25307 -14.23891 -14.08299 -13.94252 -13.34950 -12.94494 -12.69900 -12.37705 -12.32027 -12.03811 -11.87403 -11.34815 -11.13672 -10.85706 -10.65020 -10.51625 -10.22531 -9.82574 -9.50879 -9.09662 -8.54621 -8.26126 -7.67328 -7.29877 -6.77926 -4.72456 1.54936 2.03443 2.22619 2.51677 3.05601 3.06619 3.15659 3.26845 3.70947 3.80743 3.81815 4.32611 5.09330 5.25784 5.29956 5.41336 5.55830 5.79682 6.01835 6.28338 6.43413 6.64599 6.66468 6.84337 6.98263 7.28347 7.30198 7.47013 7.49872 7.65796 7.76775 7.85129 8.36303 8.45186 8.85701 9.64206 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.016709 B = 0.010324 C = 0.006640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.374136 B = 2711.535317 C = 4215.595155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.287 6.287 3 C -0.035 4.035 4 C -0.104 4.104 5 C -0.135 4.135 6 C -0.064 4.064 7 C -0.241 4.241 8 C 0.003 3.997 9 C -0.334 4.334 10 C 0.370 3.630 11 O -0.492 6.492 12 C 0.147 3.853 13 C -0.422 4.422 14 H 0.108 0.892 15 C 0.031 3.969 16 N -0.739 5.739 17 Si 1.061 2.939 18 H -0.268 1.268 19 H -0.267 1.267 20 H -0.267 1.267 21 S 0.002 5.998 22 H 0.051 0.949 23 H 0.052 0.948 24 H 0.099 0.901 25 H 0.139 0.861 26 H 0.095 0.905 27 H 0.105 0.895 28 H 0.062 0.938 29 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.450 -0.122 2.253 6.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.202 6.202 3 C -0.192 4.192 4 C -0.134 4.134 5 C -0.142 4.142 6 C -0.180 4.180 7 C -0.265 4.265 8 C -0.019 4.019 9 C -0.339 4.339 10 C 0.237 3.763 11 O -0.372 6.372 12 C 0.140 3.860 13 C -0.446 4.446 14 H 0.126 0.874 15 C -0.197 4.197 16 N -0.358 5.358 17 Si 0.882 3.118 18 H -0.192 1.192 19 H -0.192 1.192 20 H -0.192 1.192 21 S 0.261 5.739 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.117 0.883 25 H 0.157 0.843 26 H 0.113 0.887 27 H 0.123 0.877 28 H 0.078 0.922 29 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.068 -1.903 1.671 7.508 hybrid contribution 0.324 1.543 0.390 1.625 sum -6.744 -0.360 2.061 7.061 Atomic orbital electron populations 1.23047 0.79137 1.03552 1.01273 1.85829 1.20037 1.23510 1.90788 1.22561 0.94448 0.86764 1.15440 1.19310 0.91869 0.97558 1.04618 1.18859 0.93393 0.90112 1.11809 1.22180 0.92637 0.97503 1.05647 1.19204 0.96157 0.90889 1.20258 1.20557 0.91602 0.97216 0.92513 1.21072 0.94183 0.92928 1.25703 1.22962 0.87728 0.92498 0.73148 1.90463 1.43117 1.64515 1.39099 1.19345 0.88804 0.90432 0.87385 1.20942 1.02882 1.02967 1.17822 0.87388 1.27471 0.96819 1.02413 0.92988 1.70371 1.15197 1.33679 1.16513 0.83687 0.76588 0.73860 0.77626 1.19220 1.19231 1.19225 1.83587 1.10228 0.98252 1.81814 0.92997 0.92970 0.88292 0.84341 0.88701 0.87721 0.92158 0.88390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.24 101.05 1.03 1.40 15 2 O -0.29 -5.50 10.55 -18.08 -0.19 -5.69 15 3 C -0.03 -0.74 7.18 29.20 0.21 -0.53 15 4 C -0.10 -2.48 8.66 -40.63 -0.35 -2.83 15 5 C -0.13 -3.30 5.24 -104.70 -0.55 -3.85 15 6 C -0.06 -1.45 6.47 -38.35 -0.25 -1.69 15 7 C -0.24 -5.07 9.93 -39.36 -0.39 -5.46 15 8 C 0.00 0.05 9.72 -39.31 -0.38 -0.33 15 9 C -0.33 -7.76 6.05 -102.82 -0.62 -8.39 15 10 C 0.37 8.05 11.40 33.91 0.39 8.44 15 11 O -0.49 -12.37 14.78 5.44 0.08 -12.28 15 12 C 0.15 3.74 5.13 -102.05 -0.52 3.22 15 13 C -0.42 -10.81 7.25 -38.23 -0.28 -11.09 15 14 H 0.11 2.85 6.62 -52.49 -0.35 2.50 15 15 C 0.03 0.75 3.50 -17.26 -0.06 0.69 15 16 N -0.74 -18.69 12.28 55.57 0.68 -18.01 15 17 Si 1.06 20.93 30.02 -169.99 -5.10 15.83 15 18 H -0.27 -5.20 7.11 56.52 0.40 -4.79 15 19 H -0.27 -5.10 7.11 56.52 0.40 -4.70 15 20 H -0.27 -5.05 7.11 56.52 0.40 -4.65 15 21 S 0.00 0.05 21.98 -107.50 -2.36 -2.32 15 22 H 0.05 0.66 8.03 -51.93 -0.42 0.24 15 23 H 0.05 0.68 8.03 -51.93 -0.42 0.26 15 24 H 0.10 1.03 8.14 -51.93 -0.42 0.61 15 25 H 0.14 3.39 6.46 -52.48 -0.34 3.05 15 26 H 0.09 1.76 8.06 -52.48 -0.42 1.34 15 27 H 0.10 1.73 8.06 -52.49 -0.42 1.31 15 28 H 0.06 1.06 8.06 -52.49 -0.42 0.64 15 29 H 0.30 8.02 7.46 -40.82 -0.30 7.72 15 LS Contribution 270.62 15.07 4.08 4.08 Total: -1.00 -28.40 270.62 -6.90 -35.30 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -2.31 Total: 3.53 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: -1.77 Total: -20.43 kcal Atomic # 7 Polarization: -18.69 SS G_CDS: 0.68 Total: -18.01 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.11 Total: -17.97 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.10 Total: 15.83 kcal Atomic # 16 Polarization: 0.05 SS G_CDS: -2.36 Total: -2.32 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -28.40 -6.90 -35.30 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396339157.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.475 kcal (2) G-P(sol) polarization free energy of solvation -28.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds