Wall clock time and date at job start Mon Mar 30 2020 06:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35462 * 116.99978 * 2 1 4 4 C 1.33871 * 124.70631 * 180.02562 * 3 2 1 5 5 C 1.39544 * 115.65834 * 180.02562 * 4 3 2 6 6 C 1.40153 * 112.87077 * 0.02562 * 5 4 3 7 7 C 1.39620 * 120.67997 * 180.02562 * 6 5 4 8 8 C 1.37444 * 122.55666 * 0.02562 * 7 6 5 9 9 C 1.39745 * 120.91877 * 359.69831 * 8 7 6 10 10 C 1.46152 * 120.47587 * 180.27718 * 9 8 7 11 11 O 1.21412 * 120.00002 * 185.16185 * 10 9 8 12 12 C 1.46536 * 119.03955 * 0.56451 * 9 8 7 13 13 C 1.39635 * 120.73411 * 179.73379 * 12 9 8 14 14 H 1.07997 * 119.99519 * 42.21011 * 13 12 9 15 15 C 1.40445 * 119.99812 * 222.20653 * 13 12 9 16 16 N 1.30572 * 120.00058 * 27.64283 * 15 13 12 17 17 Si 1.86797 * 119.99802 * 207.63985 * 15 13 12 18 18 H 1.48505 * 109.47394 * 180.02562 * 17 15 13 19 19 H 1.48501 * 109.47387 * 300.00388 * 17 15 13 20 20 H 1.48508 * 109.47342 * 60.00300 * 17 15 13 21 21 S 1.75470 * 124.70527 * 0.02822 * 3 2 1 22 22 H 1.09002 * 109.47026 * 299.99580 * 1 2 3 23 23 H 1.09004 * 109.47071 * 59.99561 * 1 2 3 24 24 H 1.09002 * 109.47083 * 179.97438 * 1 2 3 25 25 H 1.08003 * 122.16501 * 0.04610 * 4 3 2 26 26 H 1.08003 * 118.71757 * 179.97438 * 7 6 5 27 27 H 1.07997 * 119.54013 * 180.02562 * 8 7 6 28 28 H 1.07997 * 120.00595 * 5.16325 * 10 9 8 29 29 H 0.96994 * 120.00320 * 3.22115 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0440 1.2070 0.0000 4 6 3.3707 1.3865 -0.0005 5 6 3.8008 2.7140 0.0002 6 6 2.7402 3.6302 0.0018 7 6 2.9860 5.0046 0.0021 8 6 4.2566 5.5287 0.0004 9 6 5.3776 4.6942 0.0044 10 6 6.7243 5.2619 0.0086 11 8 7.6908 4.5327 -0.0825 12 6 5.1831 3.2418 -0.0020 13 6 6.2780 2.3752 -0.0037 14 1 7.1303 2.5807 0.6269 15 6 6.2709 1.2364 -0.8256 16 7 5.5770 1.2339 -1.9317 17 14 7.2541 -0.2747 -0.3364 18 1 7.0815 -1.3320 -1.3648 19 1 8.6916 0.0828 -0.2311 20 1 6.7713 -0.7760 0.9755 21 16 1.2123 2.7520 0.0007 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 4.0630 0.5576 -0.0017 26 1 2.1450 5.6822 0.0030 27 1 4.3906 6.6003 0.0011 28 1 6.8599 6.3300 0.0927 29 1 5.1043 2.0340 -2.2096 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396339157.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:56 Heat of formation + Delta-G solvation = -52.418996 kcal Electronic energy + Delta-G solvation = -17026.421704 eV Core-core repulsion = 14198.580516 eV Total energy + Delta-G solvation = -2827.841188 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.37642 -39.72021 -38.63907 -36.02360 -35.15698 -31.54356 -30.21336 -28.22084 -26.80943 -25.22818 -23.71790 -22.38437 -20.80837 -20.38201 -18.71822 -17.46066 -17.20357 -16.89017 -16.80781 -15.88945 -15.80404 -15.58554 -15.01111 -14.61490 -14.38756 -14.05915 -14.02613 -13.71608 -13.17402 -12.93828 -12.58153 -12.49365 -12.33748 -12.06011 -11.83167 -11.52120 -11.13304 -10.85788 -10.28340 -10.00285 -9.51690 -8.96058 -8.48181 -6.55922 -0.14481 0.39553 0.41961 0.83386 1.39705 1.41873 1.55185 1.71322 2.05497 2.18861 2.30282 2.55664 3.33090 3.82347 4.20765 4.22820 4.24788 4.39551 4.53348 4.63276 4.75882 4.91873 4.99050 5.16119 5.23419 5.46225 5.56913 5.70843 5.78703 5.95038 6.11207 6.15285 6.52569 6.66718 7.16597 7.75531 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.016709 B = 0.010324 C = 0.006640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.374136 B = 2711.535317 C = 4215.595155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.303 6.303 3 C -0.026 4.026 4 C -0.143 4.143 5 C -0.157 4.157 6 C -0.097 4.097 7 C -0.237 4.237 8 C 0.005 3.995 9 C -0.358 4.358 10 C 0.372 3.628 11 O -0.532 6.532 12 C 0.123 3.877 13 C -0.462 4.462 14 H 0.088 0.912 15 C 0.007 3.993 16 N -0.761 5.761 17 Si 1.101 2.899 18 H -0.262 1.262 19 H -0.258 1.258 20 H -0.257 1.257 21 S 0.080 5.920 22 H 0.064 0.936 23 H 0.061 0.939 24 H 0.135 0.865 25 H 0.118 0.882 26 H 0.127 0.873 27 H 0.153 0.847 28 H 0.123 0.877 29 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.616 1.040 2.694 9.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.218 6.218 3 C -0.184 4.184 4 C -0.173 4.173 5 C -0.164 4.164 6 C -0.213 4.213 7 C -0.260 4.260 8 C -0.016 4.016 9 C -0.363 4.363 10 C 0.240 3.760 11 O -0.414 6.414 12 C 0.117 3.883 13 C -0.487 4.487 14 H 0.106 0.894 15 C -0.215 4.215 16 N -0.380 5.380 17 Si 0.916 3.084 18 H -0.186 1.186 19 H -0.183 1.183 20 H -0.182 1.182 21 S 0.340 5.660 22 H 0.083 0.917 23 H 0.079 0.921 24 H 0.153 0.847 25 H 0.135 0.865 26 H 0.145 0.855 27 H 0.171 0.829 28 H 0.139 0.861 29 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.263 -0.727 2.118 9.530 hybrid contribution 0.733 1.308 0.305 1.530 sum -8.530 0.581 2.423 8.886 Atomic orbital electron populations 1.23500 0.75987 1.06418 1.02251 1.85831 1.23207 1.22609 1.90161 1.22831 0.94539 0.88671 1.12363 1.19251 0.92909 0.97100 1.08012 1.18999 0.93768 0.90974 1.12700 1.22678 0.94266 0.98453 1.05877 1.19711 0.97580 0.90686 1.18065 1.21009 0.90396 0.99343 0.90837 1.21603 0.96295 0.92614 1.25753 1.23710 0.86487 0.94642 0.71149 1.90458 1.44152 1.66118 1.40715 1.19855 0.89506 0.91988 0.86929 1.20830 1.02932 1.05022 1.19869 0.89429 1.28522 0.96679 1.04236 0.92064 1.70482 1.17335 1.32708 1.17520 0.83244 0.75903 0.71357 0.77854 1.18566 1.18262 1.18180 1.83145 1.06929 0.95283 1.80681 0.91701 0.92082 0.84742 0.86454 0.85513 0.82914 0.86131 0.90477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.33 10.24 113.37 1.16 1.49 15 2 O -0.30 -11.22 10.55 -87.60 -0.92 -12.14 15 3 C -0.03 -1.08 7.18 66.83 0.48 -0.60 15 4 C -0.14 -7.03 8.66 21.59 0.19 -6.84 15 5 C -0.16 -7.88 5.24 -19.92 -0.10 -7.99 15 6 C -0.10 -4.26 6.47 23.07 0.15 -4.11 15 7 C -0.24 -9.26 9.93 22.42 0.22 -9.04 15 8 C 0.01 0.20 9.72 22.45 0.22 0.41 15 9 C -0.36 -16.48 6.05 -18.69 -0.11 -16.59 15 10 C 0.37 15.82 11.40 69.88 0.80 16.62 15 11 O -0.53 -27.31 14.78 -3.44 -0.05 -27.36 15 12 C 0.12 6.50 5.13 -18.20 -0.09 6.40 15 13 C -0.46 -25.05 7.25 23.15 0.17 -24.88 15 14 H 0.09 4.96 6.62 -2.91 -0.02 4.94 15 15 C 0.01 0.36 3.50 85.42 0.30 0.66 15 16 N -0.76 -40.70 12.28 21.91 0.27 -40.43 15 17 Si 1.10 44.15 30.02 68.60 2.06 46.21 15 18 H -0.26 -10.09 7.11 99.48 0.71 -9.39 15 19 H -0.26 -9.84 7.11 99.48 0.71 -9.14 15 20 H -0.26 -9.77 7.11 99.48 0.71 -9.06 15 21 S 0.08 2.93 21.98 -56.49 -1.24 1.69 15 22 H 0.06 1.42 8.03 -2.39 -0.02 1.40 15 23 H 0.06 1.39 8.03 -2.38 -0.02 1.37 15 24 H 0.13 2.31 8.14 -2.39 -0.02 2.29 15 25 H 0.12 6.11 6.46 -2.91 -0.02 6.09 15 26 H 0.13 4.11 8.06 -2.91 -0.02 4.09 15 27 H 0.15 4.25 8.06 -2.91 -0.02 4.23 15 28 H 0.12 3.73 8.06 -2.91 -0.02 3.70 15 29 H 0.28 15.99 7.46 -92.71 -0.69 15.30 15 Total: -1.00 -65.41 270.62 4.75 -60.67 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 1.26 Total: 15.83 kcal Atomic # 6 Polarization: -47.83 SS G_CDS: 3.37 Total: -44.46 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: 0.27 Total: -40.43 kcal Atomic # 8 Polarization: -38.53 SS G_CDS: -0.98 Total: -39.50 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.06 Total: 46.21 kcal Atomic # 16 Polarization: 2.93 SS G_CDS: -1.24 Total: 1.69 kcal Total: -65.41 4.75 -60.67 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396339157.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.247 kcal (2) G-P(sol) polarization free energy of solvation -65.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds