Wall clock time and date at job start Mon Mar 30 2020 06:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35124 * 116.99999 * 2 1 4 4 S 1.69987 * 124.12869 * 359.97438 * 3 2 1 5 5 C 1.75814 * 93.25750 * 179.97438 * 4 3 2 6 6 C 1.39606 * 130.01961 * 180.02562 * 5 4 3 7 7 C 1.38053 * 120.84034 * 180.02562 * 6 5 4 8 8 C 1.37992 * 120.45677 * 359.96417 * 7 6 5 9 9 C 1.39399 * 120.02710 * 359.97438 * 8 7 6 10 10 C 1.46615 * 120.05266 * 180.02562 * 9 8 7 11 11 O 1.21340 * 120.00450 * 355.10849 * 10 9 8 12 12 C 1.39347 * 110.29241 * 0.02562 * 5 4 3 13 13 C 1.37736 * 124.12916 * 180.26988 * 3 2 1 14 14 C 1.40776 * 123.37008 * 0.02562 * 13 3 2 15 15 H 1.08003 * 119.99863 * 134.27624 * 14 13 3 16 16 C 1.39595 * 119.99944 * 314.28155 * 14 13 3 17 17 N 1.31218 * 119.99675 * 3.09928 * 16 14 13 18 18 Si 1.86794 * 119.99746 * 183.09894 * 16 14 13 19 19 H 1.48500 * 109.47052 * 90.00304 * 18 16 14 20 20 H 1.48503 * 109.47070 * 209.99953 * 18 16 14 21 21 H 1.48493 * 109.47442 * 329.99913 * 18 16 14 22 22 H 1.08994 * 109.47133 * 300.00222 * 1 2 3 23 23 H 1.09004 * 109.46482 * 59.99869 * 1 2 3 24 24 H 1.08995 * 109.47141 * 179.97438 * 1 2 3 25 25 H 1.07994 * 119.57740 * 359.97438 * 6 5 4 26 26 H 1.07993 * 119.76931 * 179.97438 * 7 6 5 27 27 H 1.07993 * 119.98376 * 180.02562 * 8 7 6 28 28 H 1.08004 * 119.99644 * 175.09893 * 10 9 8 29 29 H 0.97000 * 119.99540 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0425 1.2040 0.0000 4 16 1.2217 2.6925 -0.0006 5 6 2.7106 3.6276 0.0006 6 6 2.9023 5.0104 0.0012 7 6 4.1735 5.5487 0.0016 8 6 5.2815 4.7261 0.0021 9 6 5.1220 3.3412 0.0027 10 6 6.2988 2.4667 0.0038 11 8 7.4104 2.9450 -0.0854 12 6 3.8150 2.7778 0.0008 13 6 3.4092 1.3749 -0.0054 14 6 4.3234 0.3044 -0.0120 15 1 5.1678 0.3196 -0.6853 16 6 4.1386 -0.7767 0.8515 17 7 3.0803 -0.8243 1.6259 18 14 5.3976 -2.1555 0.9044 19 1 6.4339 -1.8409 1.9205 20 1 4.7227 -3.4286 1.2637 21 1 6.0371 -2.2934 -0.4286 22 1 -0.3633 0.5138 0.8899 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 2.0451 5.6674 0.0006 26 1 4.3018 6.6210 0.0017 27 1 6.2724 5.1554 0.0028 28 1 6.1762 1.3967 0.0842 29 1 2.9521 -1.5753 2.2262 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396339165.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:26 Heat of formation + Delta-G solvation = -36.385024 kcal Electronic energy + Delta-G solvation = -17158.245652 eV Core-core repulsion = 14331.099749 eV Total energy + Delta-G solvation = -2827.145903 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.77406 -39.35312 -38.83800 -36.07238 -33.95422 -32.14035 -29.96879 -28.28085 -27.33171 -25.02402 -23.95847 -21.99672 -21.52825 -19.29530 -18.57620 -17.43975 -17.01177 -16.73637 -16.52749 -16.17170 -15.69153 -15.50585 -15.20641 -14.74102 -14.42167 -14.07744 -14.03411 -13.23041 -13.07463 -12.95167 -12.57929 -12.47271 -12.30266 -12.01609 -11.80942 -11.24029 -11.10572 -10.91992 -10.43578 -10.10477 -8.86347 -8.38467 -8.12950 -6.12724 -0.38904 0.25077 0.80934 1.24909 1.38772 1.44236 1.53340 1.55029 1.91011 2.35414 2.90633 2.96494 3.29042 3.62152 4.03112 4.21160 4.32205 4.39822 4.44216 4.51305 4.69770 4.72852 4.79518 5.11279 5.23471 5.39412 5.45059 5.54566 5.83998 5.99052 6.42775 6.54599 6.67570 7.13488 7.16960 8.69198 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.015825 B = 0.011565 C = 0.006884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.873593 B = 2420.513673 C = 4066.321584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.256 6.256 3 C -0.084 4.084 4 S 0.069 5.931 5 C -0.192 4.192 6 C -0.038 4.038 7 C -0.139 4.139 8 C -0.058 4.058 9 C -0.189 4.189 10 C 0.378 3.622 11 O -0.510 6.510 12 C -0.012 4.012 13 C -0.016 4.016 14 C -0.478 4.478 15 H 0.075 0.925 16 C 0.034 3.966 17 N -0.824 5.824 18 Si 0.959 3.041 19 H -0.269 1.269 20 H -0.277 1.277 21 H -0.262 1.262 22 H 0.043 0.957 23 H 0.052 0.948 24 H 0.106 0.894 25 H 0.156 0.844 26 H 0.172 0.828 27 H 0.142 0.858 28 H 0.125 0.875 29 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.231 7.117 -1.721 8.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.168 6.168 3 C -0.245 4.245 4 S 0.330 5.670 5 C -0.307 4.307 6 C -0.061 4.061 7 C -0.159 4.159 8 C -0.078 4.078 9 C -0.192 4.192 10 C 0.242 3.758 11 O -0.389 6.389 12 C -0.022 4.022 13 C -0.025 4.025 14 C -0.513 4.513 15 H 0.093 0.907 16 C -0.178 4.178 17 N -0.453 5.453 18 Si 0.782 3.218 19 H -0.194 1.194 20 H -0.202 1.202 21 H -0.186 1.186 22 H 0.062 0.938 23 H 0.071 0.929 24 H 0.125 0.875 25 H 0.174 0.826 26 H 0.189 0.811 27 H 0.160 0.840 28 H 0.141 0.859 29 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.230 7.291 -1.609 9.116 hybrid contribution 1.438 -1.496 0.344 2.103 sum -3.792 5.795 -1.266 7.040 Atomic orbital electron populations 1.23133 0.80253 1.04070 1.00430 1.86027 1.18844 1.23016 1.88917 1.22927 0.95133 0.88076 1.18407 1.81735 1.06989 0.95842 1.82453 1.22559 0.96190 0.98348 1.13556 1.21066 0.99179 0.90698 0.95118 1.21207 0.90422 1.01307 1.02995 1.21485 1.00619 0.91320 0.94400 1.20624 0.93138 0.95535 1.09871 1.24926 0.86106 0.97053 0.67665 1.90381 1.28821 1.81056 1.38608 1.19560 0.92694 0.92955 0.96951 1.17156 0.90551 0.90823 1.04009 1.18708 1.09492 1.02848 1.20252 0.90722 1.26264 0.97028 1.00014 0.94504 1.69978 1.25741 1.30095 1.19490 0.85537 0.78877 0.77981 0.79375 1.19447 1.20206 1.18564 0.93822 0.92910 0.87525 0.82604 0.81070 0.84012 0.85861 0.91865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.66 10.20 113.37 1.16 1.81 15 2 O -0.26 -12.42 7.91 -84.01 -0.66 -13.08 15 3 C -0.08 -4.12 6.41 67.70 0.43 -3.69 15 4 S 0.07 2.71 21.42 -56.49 -1.21 1.50 15 5 C -0.19 -7.54 6.42 22.87 0.15 -7.40 15 6 C -0.04 -1.14 10.05 22.56 0.23 -0.91 15 7 C -0.14 -3.77 10.00 22.17 0.22 -3.55 15 8 C -0.06 -1.93 9.57 22.49 0.22 -1.71 15 9 C -0.19 -7.86 5.91 -19.79 -0.12 -7.97 15 10 C 0.38 16.28 10.89 70.01 0.76 17.04 15 11 O -0.51 -22.45 17.15 -3.22 -0.06 -22.51 15 12 C -0.01 -0.54 6.02 -19.97 -0.12 -0.66 15 13 C -0.02 -0.81 5.45 -20.75 -0.11 -0.92 15 14 C -0.48 -25.17 7.02 23.22 0.16 -25.00 15 15 H 0.07 3.79 6.21 -2.91 -0.02 3.77 15 16 C 0.03 1.75 5.25 85.11 0.45 2.19 15 17 N -0.82 -44.12 10.61 21.78 0.23 -43.89 15 18 Si 0.96 40.33 29.56 68.60 2.03 42.36 15 19 H -0.27 -11.07 7.11 99.48 0.71 -10.36 15 20 H -0.28 -11.37 7.11 99.48 0.71 -10.67 15 21 H -0.26 -10.74 7.11 99.48 0.71 -10.04 15 22 H 0.04 1.51 7.97 -2.39 -0.02 1.49 15 23 H 0.05 1.69 7.97 -2.38 -0.02 1.67 15 24 H 0.11 3.29 8.14 -2.39 -0.02 3.27 15 25 H 0.16 3.45 8.06 -2.91 -0.02 3.43 15 26 H 0.17 3.04 8.06 -2.91 -0.02 3.01 15 27 H 0.14 4.27 7.62 -2.91 -0.02 4.25 15 28 H 0.13 5.56 4.48 -2.91 -0.01 5.54 15 29 H 0.27 13.65 8.30 -92.71 -0.77 12.88 15 Total: -1.00 -63.08 268.00 4.94 -58.14 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: 1.19 Total: 8.25 kcal Atomic # 6 Polarization: -34.19 SS G_CDS: 3.42 Total: -30.77 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: 0.23 Total: -43.89 kcal Atomic # 8 Polarization: -34.87 SS G_CDS: -0.72 Total: -35.59 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 2.03 Total: 42.36 kcal Atomic # 16 Polarization: 2.71 SS G_CDS: -1.21 Total: 1.50 kcal Total: -63.08 4.94 -58.14 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396339165.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.754 kcal (2) G-P(sol) polarization free energy of solvation -63.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds