Wall clock time and date at job start Mon Mar 30 2020 06:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35255 * 116.99931 * 2 1 4 4 C 1.41687 * 119.43436 * 270.01898 * 3 2 1 5 5 C 1.45456 * 129.07427 * 0.02562 * 4 3 2 6 6 C 1.31878 * 114.89693 * 179.97438 * 5 4 3 7 7 S 1.75308 * 111.30522 * 0.02562 * 6 5 4 8 8 C 1.39296 * 119.08591 * 180.02562 * 4 3 2 9 9 C 1.46903 * 119.64877 * 359.97438 * 8 4 3 10 10 C 1.40920 * 120.21263 * 180.02562 * 9 8 4 11 11 H 1.07998 * 120.00199 * 24.73412 * 10 9 8 12 12 C 1.39806 * 119.99910 * 204.72786 * 10 9 8 13 13 N 1.30954 * 120.00043 * 17.80506 * 12 10 9 14 14 Si 1.86803 * 120.00342 * 197.80266 * 12 10 9 15 15 H 1.48498 * 109.46742 * 59.99918 * 14 12 10 16 16 H 1.48493 * 109.47668 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.46662 * 300.00476 * 14 12 10 18 18 C 1.40003 * 119.57208 * 359.77043 * 9 8 4 19 19 C 1.39648 * 119.72449 * 0.48151 * 18 9 8 20 20 C 1.46608 * 119.58112 * 179.79347 * 19 18 9 21 21 O 1.21327 * 119.99895 * 179.72883 * 20 19 18 22 22 H 1.08997 * 109.47472 * 59.99984 * 1 2 3 23 23 H 1.09000 * 109.47587 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46952 * 300.00252 * 1 2 3 25 25 H 1.07994 * 122.54650 * 0.02574 * 5 4 3 26 26 H 1.07998 * 124.34208 * 179.97438 * 6 5 4 27 27 H 0.96998 * 120.00139 * 179.97438 * 13 12 10 28 28 H 1.07995 * 120.14331 * 180.26960 * 18 9 8 29 29 H 1.07997 * 120.00029 * 359.72122 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0430 1.2051 0.0000 4 6 2.3588 1.8257 -1.2340 5 6 2.1160 1.3513 -2.5874 6 6 2.5283 2.1622 -3.5422 7 16 3.2657 3.6068 -2.8768 8 6 2.9916 3.0666 -1.2255 9 6 3.3184 3.7070 0.0556 10 6 3.9580 4.9624 0.0780 11 1 3.8604 5.6334 -0.7626 12 6 4.7190 5.3395 1.1886 13 7 5.1304 4.4325 2.0389 14 14 5.1490 7.1370 1.4596 15 1 3.9005 7.9297 1.5942 16 1 5.9573 7.2715 2.6980 17 1 5.9314 7.6388 0.3014 18 6 2.9853 3.0644 1.2540 19 6 2.3558 1.8183 1.2199 20 6 2.0126 1.1462 2.4768 21 8 1.4612 0.0657 2.4559 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.6340 0.4074 -2.7945 26 1 2.4257 1.9615 -4.5984 27 1 5.6586 4.6940 2.8092 28 1 3.2173 3.5288 2.2010 29 1 2.2507 1.6128 3.4212 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396339206.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:53 Heat of formation + Delta-G solvation = -34.801816 kcal Electronic energy + Delta-G solvation = -17044.940956 eV Core-core repulsion = 14217.863707 eV Total energy + Delta-G solvation = -2827.077250 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.21407 -37.43022 -36.40301 -34.93345 -32.99802 -29.90282 -28.47037 -26.64379 -24.81258 -23.76243 -22.22151 -20.64300 -19.25341 -17.58940 -17.12924 -16.21706 -15.17296 -15.00033 -14.83720 -14.63405 -14.29205 -13.66885 -13.38073 -13.14496 -12.67528 -12.48724 -12.38014 -11.88470 -11.45951 -11.27232 -11.19723 -10.83376 -10.70564 -10.34666 -9.99035 -9.93569 -9.39746 -9.22932 -8.64093 -8.29474 -7.58248 -7.15934 -6.89542 -4.59473 1.60976 1.76634 2.49056 2.77263 2.91100 2.93494 3.00551 3.22693 3.42935 3.68964 4.22963 4.80833 5.05476 5.25039 5.47284 5.89484 5.94872 6.00114 6.08002 6.18307 6.23275 6.36949 6.65907 6.76108 6.86929 6.98754 7.01131 7.38914 7.47694 7.64205 8.10266 8.23681 8.37195 8.42328 8.69157 9.80351 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.017816 B = 0.009028 C = 0.006187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.246681 B = 3100.687571 C = 4524.622411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.317 6.317 3 C 0.040 3.960 4 C -0.072 4.072 5 C -0.109 4.109 6 C -0.219 4.219 7 S 0.058 5.942 8 C -0.184 4.184 9 C 0.136 3.864 10 C -0.438 4.438 11 H 0.086 0.914 12 C 0.075 3.925 13 N -0.776 5.776 14 Si 0.916 3.084 15 H -0.259 1.259 16 H -0.274 1.274 17 H -0.262 1.262 18 C -0.128 4.128 19 C -0.165 4.165 20 C 0.381 3.619 21 O -0.468 6.468 22 H 0.028 0.972 23 H 0.075 0.925 24 H 0.034 0.966 25 H 0.129 0.871 26 H 0.152 0.848 27 H 0.290 0.710 28 H 0.137 0.863 29 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.168 0.797 -2.409 4.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 O -0.233 6.233 3 C -0.008 4.008 4 C -0.080 4.080 5 C -0.141 4.141 6 C -0.353 4.353 7 S 0.320 5.680 8 C -0.300 4.300 9 C 0.129 3.871 10 C -0.466 4.466 11 H 0.104 0.896 12 C -0.146 4.146 13 N -0.399 5.399 14 Si 0.739 3.261 15 H -0.184 1.184 16 H -0.199 1.199 17 H -0.186 1.186 18 C -0.152 4.152 19 C -0.168 4.168 20 C 0.242 3.758 21 O -0.343 6.343 22 H 0.047 0.953 23 H 0.093 0.907 24 H 0.053 0.947 25 H 0.147 0.853 26 H 0.170 0.830 27 H 0.101 0.899 28 H 0.155 0.845 29 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.575 1.273 -2.935 4.107 hybrid contribution -0.397 -0.218 0.669 0.808 sum -2.972 1.055 -2.266 3.883 Atomic orbital electron populations 1.22728 0.82086 1.01104 0.98968 1.85897 1.17844 1.25579 1.93989 1.17994 1.04958 0.88468 0.89384 1.19098 1.02506 0.94061 0.92323 1.20840 1.02225 1.00078 0.90964 1.24885 1.08129 1.00067 1.02218 1.83567 1.64651 1.21509 0.98224 1.23752 1.12003 0.98099 0.96138 1.17874 0.89853 0.92145 0.87182 1.19504 1.24478 1.00174 1.02405 0.89638 1.25977 0.93729 1.00288 0.94573 1.69826 1.24178 1.35310 1.10582 0.86204 0.79657 0.81304 0.78903 1.18370 1.19901 1.18588 1.21279 1.01721 0.93582 0.98583 1.20598 1.05257 0.97198 0.93724 1.23861 0.74069 0.85075 0.92826 1.90459 1.31927 1.20961 1.90970 0.95296 0.90656 0.94696 0.85298 0.82990 0.89926 0.84515 0.89555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.84 10.40 101.05 1.05 1.90 15 2 O -0.32 -7.08 8.60 -39.99 -0.34 -7.43 15 3 C 0.04 0.93 5.79 -37.58 -0.22 0.71 15 4 C -0.07 -1.66 6.03 -105.31 -0.63 -2.29 15 5 C -0.11 -2.15 10.25 -38.61 -0.40 -2.55 15 6 C -0.22 -3.92 11.03 28.83 0.32 -3.60 15 7 S 0.06 1.15 23.02 -107.50 -2.47 -1.33 15 8 C -0.18 -4.33 6.55 -35.68 -0.23 -4.56 15 9 C 0.14 3.33 5.73 -104.71 -0.60 2.73 15 10 C -0.44 -10.44 8.91 -37.98 -0.34 -10.78 15 11 H 0.09 1.98 7.87 -52.49 -0.41 1.57 15 12 C 0.08 1.67 5.13 -17.34 -0.09 1.59 15 13 N -0.78 -17.71 10.98 55.54 0.61 -17.10 15 14 Si 0.92 16.70 29.60 -169.99 -5.03 11.67 15 15 H -0.26 -4.70 7.11 56.52 0.40 -4.30 15 16 H -0.27 -4.86 7.11 56.52 0.40 -4.46 15 17 H -0.26 -4.78 7.11 56.52 0.40 -4.38 15 18 C -0.13 -3.01 8.39 -38.39 -0.32 -3.33 15 19 C -0.16 -3.76 5.85 -105.31 -0.62 -4.37 15 20 C 0.38 7.70 11.40 34.11 0.39 8.09 15 21 O -0.47 -10.32 14.56 -17.01 -0.25 -10.56 15 22 H 0.03 0.49 8.14 -51.93 -0.42 0.07 15 23 H 0.07 1.18 8.14 -51.93 -0.42 0.76 15 24 H 0.03 0.65 7.44 -51.93 -0.39 0.26 15 25 H 0.13 2.28 8.06 -52.49 -0.42 1.86 15 26 H 0.15 2.16 8.06 -52.49 -0.42 1.73 15 27 H 0.29 5.96 8.30 -40.82 -0.34 5.62 15 28 H 0.14 3.14 6.17 -52.49 -0.32 2.81 15 29 H 0.09 1.44 8.06 -52.49 -0.42 1.02 15 LS Contribution 273.76 15.07 4.13 4.13 Total: -1.00 -27.11 273.76 -7.42 -34.53 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -2.37 Total: 2.56 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: -1.69 Total: -16.47 kcal Atomic # 7 Polarization: -17.71 SS G_CDS: 0.61 Total: -17.10 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -0.59 Total: -17.99 kcal Atomic # 14 Polarization: 16.70 SS G_CDS: -5.03 Total: 11.67 kcal Atomic # 16 Polarization: 1.15 SS G_CDS: -2.47 Total: -1.33 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -27.11 -7.42 -34.53 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396339206.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.268 kcal (2) G-P(sol) polarization free energy of solvation -27.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds