Wall clock time and date at job start Mon Mar 30 2020 06:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35923 * 116.99967 * 2 1 4 4 C 1.38576 * 119.47922 * 359.97438 * 3 2 1 5 5 C 1.39807 * 121.43099 * 179.97438 * 4 3 2 6 6 S 1.75840 * 130.27864 * 180.28254 * 5 4 3 7 7 C 1.70010 * 93.10426 * 180.02562 * 6 5 4 8 8 C 1.35963 * 111.90490 * 359.67891 * 7 6 5 9 9 C 1.46150 * 123.19670 * 180.24283 * 8 7 6 10 10 O 1.21390 * 120.00193 * 354.65343 * 9 8 7 11 11 C 1.39242 * 119.74426 * 0.02681 * 5 4 3 12 12 C 1.47339 * 118.70277 * 359.97438 * 11 5 4 13 13 C 1.40763 * 120.39976 * 179.97438 * 12 11 5 14 14 H 1.08001 * 120.00128 * 320.89301 * 13 12 11 15 15 C 1.39974 * 120.00072 * 140.90486 * 13 12 11 16 16 N 1.30840 * 119.99883 * 351.34703 * 15 13 12 17 17 Si 1.86800 * 120.00106 * 171.35574 * 15 13 12 18 18 H 1.48497 * 109.47089 * 59.99213 * 17 15 13 19 19 H 1.48497 * 109.47120 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46814 * 299.99262 * 17 15 13 21 21 C 1.38070 * 119.47767 * 180.02562 * 3 2 1 22 22 H 1.09006 * 109.47101 * 59.99719 * 1 2 3 23 23 H 1.09002 * 109.47160 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47148 * 300.00202 * 1 2 3 25 25 H 1.08000 * 119.28955 * 0.02562 * 4 3 2 26 26 H 1.08001 * 124.05225 * 179.97438 * 7 6 5 27 27 H 1.07999 * 120.00109 * 174.65343 * 9 8 7 28 28 H 0.97002 * 120.00166 * 180.02562 * 16 15 13 29 29 H 1.08000 * 120.05463 * 359.97438 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2808 2.3664 -0.0005 5 6 1.8727 3.6330 0.0000 6 16 1.1386 5.2308 0.0061 7 6 2.6428 6.0231 0.0015 8 6 3.6795 5.1434 0.0026 9 6 5.0809 5.5582 0.0044 10 8 5.3660 6.7341 -0.0929 11 6 3.2604 3.7470 0.0005 12 6 4.0715 2.5169 0.0010 13 6 5.4772 2.5905 0.0010 14 1 5.9785 3.3433 -0.5893 15 6 6.2253 1.6880 0.7659 16 7 5.6233 0.8889 1.6090 17 14 8.0833 1.6246 0.5830 18 1 8.6599 2.9495 0.9256 19 1 8.6357 0.5933 1.4975 20 1 8.4311 1.2809 -0.8192 21 6 3.4254 1.2708 -0.0005 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 0.2037 2.2867 -0.0005 26 1 2.7609 7.0967 0.0027 27 1 5.8629 4.8185 0.0924 28 1 6.1417 0.2637 2.1393 29 1 4.0062 0.3603 -0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396339797.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:28 Heat of formation + Delta-G solvation = -52.719378 kcal Electronic energy + Delta-G solvation = -16878.157220 eV Core-core repulsion = 14050.303006 eV Total energy + Delta-G solvation = -2827.854214 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.73077 -39.99894 -38.35755 -35.99402 -34.50104 -31.76964 -30.09599 -27.79259 -27.16758 -26.58464 -23.03226 -22.73368 -20.63444 -19.96445 -18.14489 -17.99224 -17.08075 -16.78058 -16.53582 -16.41237 -15.77416 -15.57588 -15.25630 -14.67018 -14.42881 -13.99927 -13.66433 -13.40539 -13.27555 -12.85768 -12.79503 -12.53639 -12.30794 -12.25391 -11.92088 -11.31485 -11.21414 -10.93721 -10.64364 -9.98527 -8.89237 -8.71349 -8.42195 -6.47214 -0.29688 0.70531 0.71253 0.83603 1.12766 1.44149 1.52605 1.54901 2.09683 2.19987 2.61291 2.72224 3.43172 3.72507 3.98381 4.28041 4.40787 4.46360 4.51981 4.63819 4.69230 4.75470 4.95965 5.04764 5.17114 5.34393 5.47329 5.65621 5.83776 5.91578 6.29224 6.51168 6.73196 6.74163 6.86997 8.27615 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.013946 B = 0.010541 C = 0.006145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.311981 B = 2655.749518 C = 4555.606434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.342 6.342 3 C 0.167 3.833 4 C -0.295 4.295 5 C -0.108 4.108 6 S 0.188 5.812 7 C -0.217 4.217 8 C -0.173 4.173 9 C 0.400 3.600 10 O -0.508 6.508 11 C -0.179 4.179 12 C 0.159 3.841 13 C -0.480 4.480 14 H 0.101 0.899 15 C 0.040 3.960 16 N -0.814 5.814 17 Si 0.977 3.023 18 H -0.253 1.253 19 H -0.270 1.270 20 H -0.256 1.256 21 C -0.231 4.231 22 H 0.060 0.940 23 H 0.119 0.881 24 H 0.055 0.945 25 H 0.131 0.869 26 H 0.179 0.821 27 H 0.130 0.870 28 H 0.293 0.707 29 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.616 0.853 -1.550 5.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.257 6.257 3 C 0.120 3.880 4 C -0.320 4.320 5 C -0.223 4.223 6 S 0.455 5.545 7 C -0.353 4.353 8 C -0.188 4.188 9 C 0.261 3.739 10 O -0.386 6.386 11 C -0.184 4.184 12 C 0.155 3.845 13 C -0.508 4.508 14 H 0.119 0.881 15 C -0.177 4.177 16 N -0.438 5.438 17 Si 0.797 3.203 18 H -0.177 1.177 19 H -0.195 1.195 20 H -0.180 1.180 21 C -0.253 4.253 22 H 0.078 0.922 23 H 0.137 0.863 24 H 0.074 0.926 25 H 0.149 0.851 26 H 0.197 0.803 27 H 0.146 0.854 28 H 0.103 0.897 29 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.853 1.678 -1.404 7.194 hybrid contribution 1.895 -0.762 0.194 2.052 sum -4.958 0.917 -1.211 5.185 Atomic orbital electron populations 1.23218 0.77342 1.04893 1.01705 1.86032 1.23020 1.27630 1.88981 1.18683 0.91907 0.83557 0.93901 1.19815 0.98704 0.89124 1.24371 1.22438 0.96242 0.98144 1.05484 1.81919 1.04813 0.93002 1.74786 1.25439 0.97652 1.04450 1.07796 1.20748 0.96802 0.92112 1.09157 1.24300 0.91457 0.90206 0.67913 1.90418 1.86672 1.23071 1.38473 1.20308 0.92167 0.92217 1.13713 1.18278 0.93087 0.87824 0.85357 1.19800 0.90952 1.14980 1.25068 0.88139 1.26763 1.05947 0.92477 0.92541 1.69845 1.40832 1.16422 1.16700 0.85292 0.75476 0.79730 0.79754 1.17729 1.19462 1.17978 1.20180 0.90368 0.97773 1.16956 0.92174 0.86265 0.92615 0.85130 0.80328 0.85411 0.89654 0.87933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.63 9.79 113.37 1.11 1.74 15 2 O -0.34 -13.83 10.48 -92.68 -0.97 -14.80 15 3 C 0.17 7.62 6.65 22.31 0.15 7.77 15 4 C -0.29 -12.27 9.03 22.73 0.21 -12.07 15 5 C -0.11 -4.61 6.45 22.89 0.15 -4.46 15 6 S 0.19 6.26 22.97 -56.49 -1.30 4.96 15 7 C -0.22 -7.94 10.41 67.29 0.70 -7.24 15 8 C -0.17 -7.33 5.97 -19.80 -0.12 -7.45 15 9 C 0.40 16.50 10.91 69.88 0.76 17.27 15 10 O -0.51 -21.80 17.50 -3.37 -0.06 -21.86 15 11 C -0.18 -8.37 6.20 -18.68 -0.12 -8.48 15 12 C 0.16 8.04 5.58 -19.75 -0.11 7.93 15 13 C -0.48 -23.06 7.53 23.31 0.18 -22.88 15 14 H 0.10 4.46 5.71 -2.91 -0.02 4.44 15 15 C 0.04 1.85 5.24 85.26 0.45 2.30 15 16 N -0.81 -40.06 11.49 21.83 0.25 -39.81 15 17 Si 0.98 34.86 29.57 68.60 2.03 36.89 15 18 H -0.25 -8.69 7.11 99.48 0.71 -7.99 15 19 H -0.27 -9.33 7.11 99.48 0.71 -8.62 15 20 H -0.26 -8.89 7.11 99.48 0.71 -8.18 15 21 C -0.23 -11.76 8.52 22.75 0.19 -11.57 15 22 H 0.06 1.50 7.62 -2.38 -0.02 1.48 15 23 H 0.12 2.46 8.14 -2.39 -0.02 2.44 15 24 H 0.06 1.44 7.62 -2.39 -0.02 1.43 15 25 H 0.13 4.56 6.14 -2.91 -0.02 4.54 15 26 H 0.18 5.76 7.98 -2.91 -0.02 5.74 15 27 H 0.13 5.15 4.83 -2.91 -0.01 5.14 15 28 H 0.29 13.12 8.30 -92.71 -0.77 12.36 15 29 H 0.10 5.54 6.97 -2.91 -0.02 5.52 15 Total: -1.00 -58.19 268.93 4.70 -53.49 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: 1.20 Total: 18.28 kcal Atomic # 6 Polarization: -40.69 SS G_CDS: 3.55 Total: -37.14 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 0.25 Total: -39.81 kcal Atomic # 8 Polarization: -35.63 SS G_CDS: -1.03 Total: -36.66 kcal Atomic # 14 Polarization: 34.86 SS G_CDS: 2.03 Total: 36.89 kcal Atomic # 16 Polarization: 6.26 SS G_CDS: -1.30 Total: 4.96 kcal Total: -58.19 4.70 -53.49 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396339797.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.769 kcal (2) G-P(sol) polarization free energy of solvation -58.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds