Wall clock time and date at job start Mon Mar 30 2020 06:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35492 * 116.99884 * 2 1 4 4 C 1.38430 * 119.60986 * 0.02562 * 3 2 1 5 5 C 1.37671 * 120.78885 * 179.97438 * 4 3 2 6 6 C 1.40460 * 119.99788 * 359.97438 * 5 4 3 7 7 C 1.40791 * 120.02168 * 179.97438 * 6 5 4 8 8 H 1.08002 * 120.00273 * 149.95784 * 7 6 5 9 9 C 1.39841 * 119.99861 * 330.23439 * 7 6 5 10 10 N 1.30950 * 119.99871 * 161.43434 * 9 7 6 11 11 Si 1.86802 * 119.99860 * 341.43488 * 9 7 6 12 12 H 1.48496 * 109.46943 * 95.42030 * 11 9 7 13 13 H 1.48499 * 109.47012 * 215.41687 * 11 9 7 14 14 H 1.48502 * 109.47000 * 335.41891 * 11 9 7 15 15 C 1.42314 * 119.95812 * 0.25177 * 6 5 4 16 16 S 1.75993 * 130.37906 * 180.29257 * 15 6 5 17 17 C 1.75487 * 91.66213 * 179.57127 * 16 15 6 18 18 C 1.41650 * 124.79240 * 179.84041 * 17 16 15 19 19 O 1.21401 * 119.99598 * 179.97438 * 18 17 16 20 20 C 1.35340 * 110.40689 * 359.82163 * 17 16 15 21 21 C 1.39696 * 119.78265 * 359.49537 * 15 6 5 22 22 H 1.09004 * 109.47330 * 59.99941 * 1 2 3 23 23 H 1.09003 * 109.47337 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47141 * 299.99807 * 1 2 3 25 25 H 1.08002 * 119.60565 * 359.97438 * 4 3 2 26 26 H 1.07999 * 120.00188 * 179.97438 * 5 4 3 27 27 H 0.97003 * 119.99622 * 179.97438 * 10 9 7 28 28 H 1.07999 * 120.00417 * 359.97438 * 18 17 16 29 29 H 1.08000 * 122.34683 * 180.02562 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2073 0.0000 4 6 1.2822 2.3631 0.0005 5 6 1.8819 3.6023 0.0011 6 6 3.2827 3.7047 0.0016 7 6 3.8964 4.9718 0.0016 8 1 4.8603 5.1049 0.4703 9 6 3.2553 6.0592 -0.6001 10 7 3.6194 7.2811 -0.3014 11 14 1.8796 5.7686 -1.8299 12 1 0.5697 5.8465 -1.1348 13 1 1.9385 6.8045 -2.8923 14 1 2.0371 4.4240 -2.4402 15 6 4.0813 2.5267 -0.0038 16 16 5.8308 2.3353 0.0023 17 6 5.6906 0.5860 0.0017 18 6 6.7856 -0.3126 0.0022 19 8 6.5878 -1.5104 0.0022 20 6 4.3885 0.2170 0.0011 21 6 3.4672 1.2720 0.0010 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 0.2046 2.2917 0.0005 26 1 1.2751 4.4958 0.0011 27 1 3.1749 8.0353 -0.7191 28 1 7.7964 0.0678 0.0026 29 1 4.0814 -0.8184 0.0011 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396340145.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:15 Heat of formation + Delta-G solvation = -34.713253 kcal Electronic energy + Delta-G solvation = -16735.634943 eV Core-core repulsion = 13908.561534 eV Total energy + Delta-G solvation = -2827.073409 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.52037 -38.72461 -37.04315 -34.95837 -33.17871 -30.10247 -29.47224 -27.27626 -25.20059 -24.53529 -22.09940 -20.97220 -19.30089 -18.04905 -17.50614 -16.46850 -15.68214 -15.30744 -15.16095 -15.08416 -14.44147 -14.08571 -14.03205 -13.38803 -12.93200 -12.72028 -12.59324 -12.34319 -11.61775 -11.45676 -11.07004 -11.01312 -10.70044 -10.54100 -10.22804 -9.88621 -9.81156 -9.64234 -9.28201 -8.40872 -7.82439 -7.17260 -6.89985 -4.60037 0.74445 2.17396 2.22712 2.47000 2.70797 2.94332 3.06117 3.15389 3.37092 3.80030 4.00256 4.21636 4.66373 5.00056 5.40628 5.48366 5.48524 5.62612 5.73228 5.75907 5.88770 6.17029 6.27712 6.47216 6.65544 6.77603 6.93247 7.18820 7.32553 7.45465 7.67134 7.98095 8.11197 8.31983 8.50258 9.83993 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.017989 B = 0.008797 C = 0.006177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.128948 B = 3182.205374 C = 4532.005678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.324 6.324 3 C 0.039 3.961 4 C -0.148 4.148 5 C -0.203 4.203 6 C 0.098 3.902 7 C -0.437 4.437 8 H 0.096 0.904 9 C 0.086 3.914 10 N -0.794 5.794 11 Si 0.909 3.091 12 H -0.268 1.268 13 H -0.287 1.287 14 H -0.242 1.242 15 C -0.147 4.147 16 S 0.128 5.872 17 C -0.328 4.328 18 C 0.414 3.586 19 O -0.478 6.478 20 C -0.002 4.002 21 C -0.080 4.080 22 H 0.046 0.954 23 H 0.087 0.913 24 H 0.047 0.953 25 H 0.111 0.889 26 H 0.114 0.886 27 H 0.289 0.711 28 H 0.096 0.904 29 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.064 -6.060 -0.850 6.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.238 6.238 3 C -0.008 4.008 4 C -0.168 4.168 5 C -0.228 4.228 6 C 0.092 3.908 7 C -0.465 4.465 8 H 0.114 0.886 9 C -0.135 4.135 10 N -0.417 5.417 11 Si 0.735 3.265 12 H -0.194 1.194 13 H -0.214 1.214 14 H -0.165 1.165 15 C -0.264 4.264 16 S 0.396 5.604 17 C -0.444 4.444 18 C 0.275 3.725 19 O -0.355 6.355 20 C -0.037 4.037 21 C -0.087 4.087 22 H 0.065 0.935 23 H 0.106 0.894 24 H 0.066 0.934 25 H 0.129 0.871 26 H 0.131 0.869 27 H 0.100 0.900 28 H 0.112 0.888 29 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.670 -5.596 -0.847 5.699 hybrid contribution -2.191 -0.411 -0.471 2.279 sum -2.862 -6.007 -1.318 6.783 Atomic orbital electron populations 1.22834 0.80055 1.02464 1.00744 1.85804 1.19824 1.27931 1.90278 1.18344 0.89235 0.83539 1.09686 1.20534 0.98147 0.92316 1.05832 1.20636 0.93788 0.95803 1.12572 1.17019 0.90676 0.90833 0.92297 1.19323 1.05979 0.90408 1.30758 0.88626 1.26153 0.96872 0.94140 0.96349 1.69727 1.37524 0.99663 1.34819 0.86309 0.80122 0.80085 0.80006 1.19360 1.21395 1.16546 1.22881 0.95251 0.95923 1.12301 1.83666 1.03122 0.96684 1.76886 1.23803 0.99063 1.00440 1.21062 1.21719 0.92759 0.87496 0.70514 1.90532 1.89283 1.18463 1.37224 1.20657 0.90736 0.99910 0.92365 1.17224 0.90860 0.91934 1.08639 0.93493 0.89405 0.93407 0.87129 0.86872 0.90027 0.88752 0.84167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 9.79 101.05 0.99 1.46 15 2 O -0.32 -6.00 10.33 -18.17 -0.19 -6.19 15 3 C 0.04 0.82 6.79 -37.89 -0.26 0.56 15 4 C -0.15 -3.02 8.95 -39.72 -0.36 -3.37 15 5 C -0.20 -4.57 7.14 -38.95 -0.28 -4.84 15 6 C 0.10 2.34 5.13 -106.53 -0.55 1.79 15 7 C -0.44 -10.95 9.29 -38.02 -0.35 -11.31 15 8 H 0.10 2.51 7.99 -52.49 -0.42 2.09 15 9 C 0.09 2.08 5.39 -17.33 -0.09 1.99 15 10 N -0.79 -19.72 13.93 55.54 0.77 -18.94 15 11 Si 0.91 19.28 24.51 -169.99 -4.17 15.11 15 12 H -0.27 -5.43 6.70 56.52 0.38 -5.05 15 13 H -0.29 -5.89 7.11 56.52 0.40 -5.49 15 14 H -0.24 -5.32 6.88 56.52 0.39 -4.93 15 15 C -0.15 -3.30 6.37 -37.47 -0.24 -3.53 15 16 S 0.13 2.44 22.87 -107.50 -2.46 -0.02 15 17 C -0.33 -5.92 6.17 -39.31 -0.24 -6.16 15 18 C 0.41 6.52 11.46 32.03 0.37 6.89 15 19 O -0.48 -8.83 17.45 5.45 0.10 -8.73 15 20 C 0.00 -0.03 9.63 -39.93 -0.38 -0.42 15 21 C -0.08 -1.72 5.86 -107.04 -0.63 -2.35 15 22 H 0.05 0.60 7.63 -51.93 -0.40 0.20 15 23 H 0.09 0.94 8.14 -51.93 -0.42 0.51 15 24 H 0.05 0.61 7.62 -51.93 -0.40 0.21 15 25 H 0.11 1.90 6.18 -52.49 -0.32 1.58 15 26 H 0.11 2.48 4.71 -52.49 -0.25 2.23 15 27 H 0.29 6.47 8.30 -40.82 -0.34 6.13 15 28 H 0.10 1.12 8.06 -52.49 -0.42 0.70 15 29 H 0.14 2.65 7.93 -52.49 -0.42 2.24 15 LS Contribution 268.31 15.07 4.04 4.04 Total: -1.00 -27.46 268.31 -6.14 -33.60 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -2.21 Total: 0.42 kcal Atomic # 6 Polarization: -17.27 SS G_CDS: -2.02 Total: -19.29 kcal Atomic # 7 Polarization: -19.72 SS G_CDS: 0.77 Total: -18.94 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -0.09 Total: -14.92 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -4.17 Total: 15.11 kcal Atomic # 16 Polarization: 2.44 SS G_CDS: -2.46 Total: -0.02 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -27.46 -6.14 -33.60 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396340145.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.114 kcal (2) G-P(sol) polarization free energy of solvation -27.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds