Wall clock time and date at job start Mon Mar 30 2020 06:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35492 * 116.99884 * 2 1 4 4 C 1.38430 * 119.60986 * 0.02562 * 3 2 1 5 5 C 1.37671 * 120.78885 * 179.97438 * 4 3 2 6 6 C 1.40460 * 119.99788 * 359.97438 * 5 4 3 7 7 C 1.40791 * 120.02168 * 179.97438 * 6 5 4 8 8 H 1.08002 * 120.00273 * 149.95784 * 7 6 5 9 9 C 1.39841 * 119.99861 * 330.23439 * 7 6 5 10 10 N 1.30950 * 119.99871 * 161.43434 * 9 7 6 11 11 Si 1.86802 * 119.99860 * 341.43488 * 9 7 6 12 12 H 1.48496 * 109.46943 * 95.42030 * 11 9 7 13 13 H 1.48499 * 109.47012 * 215.41687 * 11 9 7 14 14 H 1.48502 * 109.47000 * 335.41891 * 11 9 7 15 15 C 1.42314 * 119.95812 * 0.25177 * 6 5 4 16 16 S 1.75993 * 130.37906 * 180.29257 * 15 6 5 17 17 C 1.75487 * 91.66213 * 179.57127 * 16 15 6 18 18 C 1.41650 * 124.79240 * 179.84041 * 17 16 15 19 19 O 1.21401 * 119.99598 * 179.97438 * 18 17 16 20 20 C 1.35340 * 110.40689 * 359.82163 * 17 16 15 21 21 C 1.39696 * 119.78265 * 359.49537 * 15 6 5 22 22 H 1.09004 * 109.47330 * 59.99941 * 1 2 3 23 23 H 1.09003 * 109.47337 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47141 * 299.99807 * 1 2 3 25 25 H 1.08002 * 119.60565 * 359.97438 * 4 3 2 26 26 H 1.07999 * 120.00188 * 179.97438 * 5 4 3 27 27 H 0.97003 * 119.99622 * 179.97438 * 10 9 7 28 28 H 1.07999 * 120.00417 * 359.97438 * 18 17 16 29 29 H 1.08000 * 122.34683 * 180.02562 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2073 0.0000 4 6 1.2822 2.3631 0.0005 5 6 1.8819 3.6023 0.0011 6 6 3.2827 3.7047 0.0016 7 6 3.8964 4.9718 0.0016 8 1 4.8603 5.1049 0.4703 9 6 3.2553 6.0592 -0.6001 10 7 3.6194 7.2811 -0.3014 11 14 1.8796 5.7686 -1.8299 12 1 0.5697 5.8465 -1.1348 13 1 1.9385 6.8045 -2.8923 14 1 2.0371 4.4240 -2.4402 15 6 4.0813 2.5267 -0.0038 16 16 5.8308 2.3353 0.0023 17 6 5.6906 0.5860 0.0017 18 6 6.7856 -0.3126 0.0022 19 8 6.5878 -1.5104 0.0022 20 6 4.3885 0.2170 0.0011 21 6 3.4672 1.2720 0.0010 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 0.2046 2.2917 0.0005 26 1 1.2751 4.4958 0.0011 27 1 3.1749 8.0353 -0.7191 28 1 7.7964 0.0678 0.0026 29 1 4.0814 -0.8184 0.0011 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396340145.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:15 Heat of formation + Delta-G solvation = -51.210898 kcal Electronic energy + Delta-G solvation = -16736.350335 eV Core-core repulsion = 13908.561534 eV Total energy + Delta-G solvation = -2827.788801 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.05936 -40.12672 -38.56412 -36.58979 -34.88771 -31.77406 -31.00227 -28.56054 -26.76849 -26.10831 -23.63482 -22.63197 -20.78883 -19.60759 -19.13715 -17.96677 -17.25384 -16.89835 -16.54740 -16.49936 -15.89451 -15.58318 -15.48544 -15.06419 -14.55788 -14.24352 -14.11595 -13.94144 -13.13613 -13.02880 -12.67476 -12.36612 -12.22150 -12.19240 -11.80965 -11.56078 -11.42635 -11.00439 -10.96794 -9.99916 -9.43167 -8.95310 -8.53147 -6.41166 -0.76761 0.50634 0.68757 0.90547 1.13404 1.25855 1.38152 1.47991 1.90208 2.09551 2.51070 2.63928 3.23177 3.40372 4.03546 4.06377 4.23749 4.32754 4.44813 4.46512 4.59730 4.68659 4.78141 4.90616 5.05345 5.12877 5.27438 5.52491 5.63399 5.76690 6.15357 6.37724 6.40842 6.66907 6.75417 8.12020 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.017989 B = 0.008797 C = 0.006177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.128948 B = 3182.205374 C = 4532.005678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.335 6.335 3 C 0.053 3.947 4 C -0.156 4.156 5 C -0.209 4.209 6 C 0.079 3.921 7 C -0.469 4.469 8 H 0.066 0.934 9 C 0.055 3.945 10 N -0.836 5.836 11 Si 0.956 3.044 12 H -0.250 1.250 13 H -0.277 1.277 14 H -0.255 1.255 15 C -0.178 4.178 16 S 0.152 5.848 17 C -0.313 4.313 18 C 0.422 3.578 19 O -0.500 6.500 20 C -0.021 4.021 21 C -0.098 4.098 22 H 0.057 0.943 23 H 0.120 0.880 24 H 0.058 0.942 25 H 0.146 0.854 26 H 0.116 0.884 27 H 0.297 0.703 28 H 0.150 0.850 29 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.932 -7.952 -1.282 8.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.249 6.249 3 C 0.005 3.995 4 C -0.176 4.176 5 C -0.233 4.233 6 C 0.073 3.927 7 C -0.498 4.498 8 H 0.084 0.916 9 C -0.162 4.162 10 N -0.461 5.461 11 Si 0.779 3.221 12 H -0.175 1.175 13 H -0.203 1.203 14 H -0.179 1.179 15 C -0.294 4.294 16 S 0.420 5.580 17 C -0.429 4.429 18 C 0.285 3.715 19 O -0.378 6.378 20 C -0.055 4.055 21 C -0.105 4.105 22 H 0.076 0.924 23 H 0.138 0.862 24 H 0.077 0.923 25 H 0.163 0.837 26 H 0.134 0.866 27 H 0.107 0.893 28 H 0.166 0.834 29 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.550 -7.495 -1.270 7.758 hybrid contribution -1.921 -0.111 -0.282 1.944 sum -3.471 -7.606 -1.552 8.503 Atomic orbital electron populations 1.23245 0.77186 1.05078 1.01756 1.85810 1.22748 1.26671 1.89717 1.18594 0.89364 0.84605 1.06913 1.20837 0.99986 0.91288 1.05473 1.20817 0.93399 0.96922 1.12151 1.17166 0.91698 0.90799 0.93041 1.19227 1.05617 0.91801 1.33141 0.91569 1.26727 0.98558 0.93712 0.97195 1.69750 1.39461 1.00353 1.36563 0.85600 0.78737 0.79273 0.78456 1.17522 1.20350 1.17932 1.23187 0.97301 0.96024 1.12928 1.83536 1.00998 0.97173 1.76264 1.24240 0.99556 1.00352 1.18781 1.22359 0.93823 0.86481 0.68878 1.90539 1.89684 1.19536 1.37991 1.20713 0.91150 0.99758 0.93923 1.17567 0.91919 0.92128 1.08902 0.92430 0.86204 0.92289 0.83684 0.86633 0.89271 0.83437 0.83554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 9.79 113.37 1.11 1.62 15 2 O -0.33 -11.52 10.33 -87.93 -0.91 -12.43 15 3 C 0.05 2.13 6.79 23.37 0.16 2.29 15 4 C -0.16 -6.04 8.95 22.18 0.20 -5.84 15 5 C -0.21 -9.25 7.14 22.68 0.16 -9.09 15 6 C 0.08 3.83 5.13 -21.10 -0.11 3.72 15 7 C -0.47 -24.49 9.29 23.28 0.22 -24.27 15 8 H 0.07 3.70 7.99 -2.91 -0.02 3.68 15 9 C 0.05 2.73 5.39 85.21 0.46 3.19 15 10 N -0.84 -42.92 13.93 21.81 0.30 -42.62 15 11 Si 0.96 39.66 24.51 68.60 1.68 41.35 15 12 H -0.25 -9.56 6.70 99.48 0.67 -8.90 15 13 H -0.28 -10.89 7.11 99.48 0.71 -10.18 15 14 H -0.26 -11.01 6.88 99.48 0.68 -10.33 15 15 C -0.18 -8.02 6.37 23.64 0.15 -7.87 15 16 S 0.15 5.69 22.87 -56.49 -1.29 4.40 15 17 C -0.31 -10.72 6.17 22.44 0.14 -10.58 15 18 C 0.42 12.00 11.46 68.66 0.79 12.78 15 19 O -0.50 -17.14 17.45 -3.41 -0.06 -17.20 15 20 C -0.02 -0.80 9.63 22.04 0.21 -0.59 15 21 C -0.10 -4.15 5.86 -21.43 -0.13 -4.28 15 22 H 0.06 1.25 7.63 -2.39 -0.02 1.23 15 23 H 0.12 2.05 8.14 -2.39 -0.02 2.03 15 24 H 0.06 1.27 7.62 -2.38 -0.02 1.25 15 25 H 0.15 4.50 6.18 -2.91 -0.02 4.48 15 26 H 0.12 4.97 4.71 -2.91 -0.01 4.96 15 27 H 0.30 13.64 8.30 -92.71 -0.77 12.87 15 28 H 0.15 2.79 8.06 -2.91 -0.02 2.76 15 29 H 0.15 5.32 7.93 -2.91 -0.02 5.30 15 Total: -1.00 -60.47 268.31 4.22 -56.25 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: 1.13 Total: 9.17 kcal Atomic # 6 Polarization: -42.27 SS G_CDS: 3.36 Total: -38.92 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: 0.30 Total: -42.62 kcal Atomic # 8 Polarization: -28.66 SS G_CDS: -0.97 Total: -29.63 kcal Atomic # 14 Polarization: 39.66 SS G_CDS: 1.68 Total: 41.35 kcal Atomic # 16 Polarization: 5.69 SS G_CDS: -1.29 Total: 4.40 kcal Total: -60.47 4.22 -56.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396340145.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.041 kcal (2) G-P(sol) polarization free energy of solvation -60.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds