Wall clock time and date at job start Mon Mar 30 2020 06:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35596 * 116.99740 * 2 1 4 4 C 1.38189 * 119.64010 * 359.97438 * 3 2 1 5 5 C 1.39598 * 122.44429 * 179.97438 * 4 3 2 6 6 S 1.76237 * 130.04307 * 180.02562 * 5 4 3 7 7 C 1.75459 * 91.56189 * 179.97438 * 6 5 4 8 8 C 1.32821 * 110.71867 * 0.02562 * 7 6 5 9 9 C 1.39888 * 115.82157 * 359.97438 * 8 7 6 10 10 C 1.47842 * 128.85539 * 180.02562 * 9 8 7 11 11 C 1.39696 * 120.68576 * 359.95309 * 10 9 8 12 12 H 1.07998 * 120.00236 * 136.21058 * 11 10 9 13 13 C 1.40463 * 119.99901 * 316.21892 * 11 10 9 14 14 N 1.30552 * 120.00202 * 154.45754 * 13 11 10 15 15 Si 1.86797 * 119.99789 * 334.45310 * 13 11 10 16 16 H 1.48503 * 109.47293 * 96.08564 * 15 13 11 17 17 H 1.48505 * 109.47404 * 216.08893 * 15 13 11 18 18 H 1.48498 * 109.47558 * 336.08679 * 15 13 11 19 19 C 1.40322 * 119.63521 * 180.02562 * 3 2 1 20 20 C 1.41565 * 120.50330 * 0.02562 * 19 3 2 21 21 O 1.21438 * 119.99921 * 174.85179 * 20 19 3 22 22 H 1.09003 * 109.46941 * 59.99976 * 1 2 3 23 23 H 1.09003 * 109.47151 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47336 * 300.00370 * 1 2 3 25 25 H 1.07999 * 118.77766 * 0.04919 * 4 3 2 26 26 H 1.08004 * 124.63987 * 179.72641 * 7 6 5 27 27 H 1.07999 * 122.08837 * 179.97438 * 8 7 6 28 28 H 0.97002 * 119.99713 * 180.02562 * 14 13 11 29 29 H 1.08005 * 119.99881 * 354.84830 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0445 1.2082 0.0000 4 6 1.2846 2.3624 -0.0005 5 6 1.8567 3.6357 0.0000 6 16 1.0906 5.2229 0.0000 7 6 2.6494 6.0284 0.0016 8 6 3.6372 5.1404 0.0014 9 6 3.2484 3.7966 0.0006 10 6 4.0967 2.5857 0.0008 11 6 5.4896 2.6910 0.0008 12 1 6.0790 2.0586 0.6481 13 6 6.1237 3.6197 -0.8409 14 7 7.3017 4.0871 -0.5273 15 14 5.2816 4.1857 -2.4093 16 1 4.5740 5.4667 -2.1566 17 1 6.2982 4.3833 -3.4736 18 1 4.3029 3.1573 -2.8446 19 6 3.4463 1.2728 -0.0005 20 6 4.2202 0.0874 -0.0016 21 8 5.4292 0.1517 -0.0965 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 0.2081 2.2760 -0.0001 26 1 2.7869 7.0996 -0.0021 27 1 4.6756 5.4373 0.0018 28 1 7.7393 4.7287 -1.1085 29 1 3.7354 -0.8741 0.0819 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396340218.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:39 Heat of formation + Delta-G solvation = -26.966000 kcal Electronic energy + Delta-G solvation = -17307.957181 eV Core-core repulsion = 14481.219718 eV Total energy + Delta-G solvation = -2826.737463 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.40209 -37.69058 -37.00680 -34.09633 -33.25268 -30.56662 -29.13485 -26.60063 -25.71537 -23.46093 -22.11093 -20.44453 -18.87476 -18.58409 -16.67412 -16.49761 -15.65804 -15.28749 -15.08412 -14.84873 -14.04897 -13.85806 -13.40580 -12.95527 -12.55961 -12.41062 -12.14442 -12.04612 -11.87335 -11.48652 -11.29103 -11.14091 -10.98969 -10.38604 -10.23969 -9.96214 -9.55659 -9.38163 -8.47070 -8.17154 -7.45534 -7.31314 -6.87947 -4.87178 1.52282 2.02118 2.34149 2.76757 2.90878 2.96550 3.09242 3.12404 3.72460 3.79263 3.81491 4.22988 5.02116 5.37685 5.45731 5.52669 5.65136 5.80521 5.88713 6.11833 6.23098 6.41810 6.44500 6.65054 6.84528 7.01606 7.06183 7.23278 7.36132 7.53751 7.88877 8.06312 8.28368 8.34173 9.01245 9.47728 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.015775 B = 0.012332 C = 0.007666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.590460 B = 2270.023066 C = 3651.691226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.318 6.318 3 C 0.245 3.755 4 C -0.329 4.329 5 C -0.018 4.018 6 S 0.025 5.975 7 C -0.275 4.275 8 C -0.062 4.062 9 C -0.196 4.196 10 C 0.158 3.842 11 C -0.341 4.341 12 H 0.124 0.876 13 C 0.085 3.915 14 N -0.746 5.746 15 Si 0.894 3.106 16 H -0.241 1.241 17 H -0.276 1.276 18 H -0.242 1.242 19 C -0.344 4.344 20 C 0.376 3.624 21 O -0.497 6.497 22 H 0.052 0.948 23 H 0.091 0.909 24 H 0.053 0.947 25 H 0.107 0.893 26 H 0.150 0.850 27 H 0.132 0.868 28 H 0.298 0.702 29 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.078 0.529 -1.099 9.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.231 6.231 3 C 0.196 3.804 4 C -0.354 4.354 5 C -0.135 4.135 6 S 0.286 5.714 7 C -0.408 4.408 8 C -0.091 4.091 9 C -0.203 4.203 10 C 0.151 3.849 11 C -0.364 4.364 12 H 0.142 0.858 13 C -0.143 4.143 14 N -0.365 5.365 15 Si 0.716 3.284 16 H -0.165 1.165 17 H -0.201 1.201 18 H -0.165 1.165 19 C -0.348 4.348 20 C 0.244 3.756 21 O -0.379 6.379 22 H 0.071 0.929 23 H 0.110 0.890 24 H 0.071 0.929 25 H 0.125 0.875 26 H 0.168 0.832 27 H 0.149 0.851 28 H 0.109 0.891 29 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.552 1.125 -1.151 9.687 hybrid contribution 0.707 0.115 -0.575 0.919 sum -8.846 1.240 -1.726 9.097 Atomic orbital electron populations 1.22948 0.79412 1.02812 1.01358 1.85952 1.20736 1.28334 1.88046 1.18761 0.91114 0.82429 0.88088 1.19319 0.97716 0.89623 1.28764 1.22192 0.95533 0.95548 1.00216 1.83500 1.10328 0.97781 1.79798 1.24555 0.94169 1.01955 1.20136 1.19798 0.99750 0.91693 0.97818 1.19223 0.91510 0.93168 1.16362 1.19153 0.91581 0.87115 0.87008 1.19856 0.91134 1.11073 1.14383 0.85838 1.26609 0.94758 0.91959 1.00960 1.69621 1.13294 1.18092 1.35520 0.86556 0.80482 0.82272 0.79103 1.16475 1.20133 1.16462 1.19612 0.89225 0.95575 1.30434 1.21568 0.88825 0.91696 0.73519 1.90496 1.17151 1.90353 1.39919 0.92923 0.89020 0.92877 0.87514 0.83198 0.85086 0.89100 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.79 101.05 0.99 1.38 15 2 O -0.32 -5.71 9.57 -18.49 -0.18 -5.89 15 3 C 0.25 5.20 6.68 -38.82 -0.26 4.94 15 4 C -0.33 -6.79 8.98 -39.09 -0.35 -7.14 15 5 C -0.02 -0.40 6.47 -38.37 -0.25 -0.65 15 6 S 0.02 0.46 23.30 -107.50 -2.50 -2.05 15 7 C -0.28 -5.32 11.11 28.87 0.32 -4.99 15 8 C -0.06 -1.35 6.63 -40.83 -0.27 -1.62 15 9 C -0.20 -4.62 4.77 -104.65 -0.50 -5.12 15 10 C 0.16 3.99 4.91 -102.09 -0.50 3.49 15 11 C -0.34 -8.93 7.67 -38.20 -0.29 -9.22 15 12 H 0.12 3.51 6.77 -52.49 -0.36 3.16 15 13 C 0.08 2.07 4.24 -17.26 -0.07 2.00 15 14 N -0.75 -17.96 13.91 55.58 0.77 -17.19 15 15 Si 0.89 19.57 24.71 -169.99 -4.20 15.37 15 16 H -0.24 -5.01 5.89 56.52 0.33 -4.67 15 17 H -0.28 -5.69 7.11 56.52 0.40 -5.29 15 18 H -0.24 -5.69 7.11 56.52 0.40 -5.29 15 19 C -0.34 -8.20 5.92 -104.51 -0.62 -8.81 15 20 C 0.38 8.68 10.94 32.00 0.35 9.03 15 21 O -0.50 -12.99 14.66 5.42 0.08 -12.92 15 22 H 0.05 0.65 7.62 -51.93 -0.40 0.25 15 23 H 0.09 0.90 8.14 -51.93 -0.42 0.47 15 24 H 0.05 0.65 7.62 -51.93 -0.40 0.25 15 25 H 0.11 1.90 6.09 -52.49 -0.32 1.58 15 26 H 0.15 2.45 8.06 -52.48 -0.42 2.03 15 27 H 0.13 2.87 6.01 -52.49 -0.32 2.55 15 28 H 0.30 6.33 8.29 -40.82 -0.34 5.99 15 29 H 0.06 1.25 7.54 -52.48 -0.40 0.85 15 LS Contribution 260.49 15.07 3.93 3.93 Total: -1.00 -27.79 260.49 -5.78 -33.57 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -2.22 Total: 1.89 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: -1.46 Total: -16.71 kcal Atomic # 7 Polarization: -17.96 SS G_CDS: 0.77 Total: -17.19 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -0.10 Total: -18.81 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -4.20 Total: 15.37 kcal Atomic # 16 Polarization: 0.46 SS G_CDS: -2.50 Total: -2.05 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -27.79 -5.78 -33.57 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396340218.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.602 kcal (2) G-P(sol) polarization free energy of solvation -27.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds