Wall clock time and date at job start Mon Mar 30 2020 06:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35596 * 116.99740 * 2 1 4 4 C 1.38189 * 119.64010 * 359.97438 * 3 2 1 5 5 C 1.39598 * 122.44429 * 179.97438 * 4 3 2 6 6 S 1.76237 * 130.04307 * 180.02562 * 5 4 3 7 7 C 1.75459 * 91.56189 * 179.97438 * 6 5 4 8 8 C 1.32821 * 110.71867 * 0.02562 * 7 6 5 9 9 C 1.39888 * 115.82157 * 359.97438 * 8 7 6 10 10 C 1.47842 * 128.85539 * 180.02562 * 9 8 7 11 11 C 1.39696 * 120.68576 * 359.95309 * 10 9 8 12 12 H 1.07998 * 120.00236 * 136.21058 * 11 10 9 13 13 C 1.40463 * 119.99901 * 316.21892 * 11 10 9 14 14 N 1.30552 * 120.00202 * 154.45754 * 13 11 10 15 15 Si 1.86797 * 119.99789 * 334.45310 * 13 11 10 16 16 H 1.48503 * 109.47293 * 96.08564 * 15 13 11 17 17 H 1.48505 * 109.47404 * 216.08893 * 15 13 11 18 18 H 1.48498 * 109.47558 * 336.08679 * 15 13 11 19 19 C 1.40322 * 119.63521 * 180.02562 * 3 2 1 20 20 C 1.41565 * 120.50330 * 0.02562 * 19 3 2 21 21 O 1.21438 * 119.99921 * 174.85179 * 20 19 3 22 22 H 1.09003 * 109.46941 * 59.99976 * 1 2 3 23 23 H 1.09003 * 109.47151 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47336 * 300.00370 * 1 2 3 25 25 H 1.07999 * 118.77766 * 0.04919 * 4 3 2 26 26 H 1.08004 * 124.63987 * 179.72641 * 7 6 5 27 27 H 1.07999 * 122.08837 * 179.97438 * 8 7 6 28 28 H 0.97002 * 119.99713 * 180.02562 * 14 13 11 29 29 H 1.08005 * 119.99881 * 354.84830 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0445 1.2082 0.0000 4 6 1.2846 2.3624 -0.0005 5 6 1.8567 3.6357 0.0000 6 16 1.0906 5.2229 0.0000 7 6 2.6494 6.0284 0.0016 8 6 3.6372 5.1404 0.0014 9 6 3.2484 3.7966 0.0006 10 6 4.0967 2.5857 0.0008 11 6 5.4896 2.6910 0.0008 12 1 6.0790 2.0586 0.6481 13 6 6.1237 3.6197 -0.8409 14 7 7.3017 4.0871 -0.5273 15 14 5.2816 4.1857 -2.4093 16 1 4.5740 5.4667 -2.1566 17 1 6.2982 4.3833 -3.4736 18 1 4.3029 3.1573 -2.8446 19 6 3.4463 1.2728 -0.0005 20 6 4.2202 0.0874 -0.0016 21 8 5.4292 0.1517 -0.0965 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 0.2081 2.2760 -0.0001 26 1 2.7869 7.0996 -0.0021 27 1 4.6756 5.4373 0.0018 28 1 7.7393 4.7287 -1.1085 29 1 3.7354 -0.8741 0.0819 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396340218.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:39 Heat of formation + Delta-G solvation = -44.365517 kcal Electronic energy + Delta-G solvation = -17308.711681 eV Core-core repulsion = 14481.219718 eV Total energy + Delta-G solvation = -2827.491963 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.97706 -39.32551 -38.77209 -35.88925 -34.88607 -32.31268 -30.73488 -27.84053 -27.42678 -25.18270 -23.80208 -22.08805 -20.56433 -20.29896 -18.32078 -18.10123 -17.25700 -16.81442 -16.57214 -16.53283 -15.59926 -15.47625 -15.18803 -14.69067 -14.26507 -14.11961 -13.76289 -13.63894 -13.50111 -13.12773 -12.97931 -12.51570 -12.38525 -12.11822 -11.83629 -11.58678 -11.33502 -10.93738 -10.24131 -9.94019 -9.25061 -8.95614 -8.49759 -6.71690 -0.15742 0.24623 0.76146 1.16616 1.17380 1.22760 1.35542 1.43252 1.97188 2.06324 2.38918 2.47699 3.23814 3.85097 4.15456 4.28810 4.39952 4.48701 4.52451 4.62116 4.70043 4.77105 4.83938 5.03032 5.17227 5.34046 5.38357 5.57214 5.63389 5.81588 6.00507 6.39728 6.39936 6.65445 7.21797 7.75697 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.015775 B = 0.012332 C = 0.007666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.590460 B = 2270.023066 C = 3651.691226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.324 6.324 3 C 0.248 3.752 4 C -0.321 4.321 5 C -0.049 4.049 6 S 0.099 5.901 7 C -0.258 4.258 8 C -0.093 4.093 9 C -0.217 4.217 10 C 0.149 3.851 11 C -0.382 4.382 12 H 0.082 0.918 13 C 0.066 3.934 14 N -0.776 5.776 15 Si 0.935 3.065 16 H -0.219 1.219 17 H -0.257 1.257 18 H -0.271 1.271 19 C -0.377 4.377 20 C 0.374 3.626 21 O -0.538 6.538 22 H 0.062 0.938 23 H 0.127 0.873 24 H 0.063 0.937 25 H 0.140 0.860 26 H 0.186 0.814 27 H 0.123 0.877 28 H 0.310 0.690 29 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.547 1.773 -1.724 12.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.237 6.237 3 C 0.198 3.802 4 C -0.346 4.346 5 C -0.166 4.166 6 S 0.361 5.639 7 C -0.391 4.391 8 C -0.122 4.122 9 C -0.224 4.224 10 C 0.143 3.857 11 C -0.406 4.406 12 H 0.099 0.901 13 C -0.159 4.159 14 N -0.398 5.398 15 Si 0.755 3.245 16 H -0.142 1.142 17 H -0.181 1.181 18 H -0.196 1.196 19 C -0.381 4.381 20 C 0.245 3.755 21 O -0.423 6.423 22 H 0.080 0.920 23 H 0.145 0.855 24 H 0.082 0.918 25 H 0.158 0.842 26 H 0.203 0.797 27 H 0.140 0.860 28 H 0.122 0.878 29 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -13.043 2.373 -1.764 13.374 hybrid contribution 1.484 -0.309 -0.298 1.545 sum -11.559 2.064 -2.062 11.921 Atomic orbital electron populations 1.23383 0.76347 1.05614 1.02270 1.85939 1.23720 1.26657 1.87348 1.18666 0.90331 0.83965 0.87253 1.19707 0.99339 0.88966 1.26603 1.22658 0.95594 0.98059 1.00249 1.83229 1.08168 0.94296 1.78192 1.25117 0.94318 1.03530 1.16139 1.19801 1.00220 0.91575 1.00594 1.19390 0.92392 0.93373 1.17227 1.19465 0.91593 0.88687 0.85959 1.19611 0.91758 1.12568 1.16687 0.90053 1.27021 0.95106 0.91628 1.02160 1.69596 1.14154 1.19206 1.36805 0.86003 0.79700 0.81846 0.76999 1.14183 1.18114 1.19560 1.19919 0.91165 0.95450 1.31602 1.22073 0.88223 0.93044 0.72172 1.90487 1.18885 1.90928 1.41976 0.91963 0.85502 0.91825 0.84223 0.79724 0.85951 0.87795 0.88403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.79 113.37 1.11 1.50 15 2 O -0.32 -10.85 9.57 -89.06 -0.85 -11.70 15 3 C 0.25 10.19 6.68 22.77 0.15 10.35 15 4 C -0.32 -12.38 8.98 22.59 0.20 -12.18 15 5 C -0.05 -2.03 6.47 23.05 0.15 -1.88 15 6 S 0.10 3.26 23.30 -56.49 -1.32 1.95 15 7 C -0.26 -9.01 11.11 66.64 0.74 -8.27 15 8 C -0.09 -3.94 6.63 21.49 0.14 -3.80 15 9 C -0.22 -10.16 4.77 -19.88 -0.09 -10.25 15 10 C 0.15 7.80 4.91 -18.22 -0.09 7.71 15 11 C -0.38 -21.34 7.67 23.16 0.18 -21.16 15 12 H 0.08 5.10 6.77 -2.91 -0.02 5.08 15 13 C 0.07 3.35 4.24 85.43 0.36 3.71 15 14 N -0.78 -39.07 13.91 21.92 0.30 -38.76 15 15 Si 0.94 40.65 24.71 68.60 1.69 42.35 15 16 H -0.22 -8.63 5.89 99.48 0.59 -8.05 15 17 H -0.26 -10.16 7.11 99.48 0.71 -9.46 15 18 H -0.27 -12.96 7.11 99.48 0.71 -12.25 15 19 C -0.38 -18.34 5.92 -19.79 -0.12 -18.46 15 20 C 0.37 17.87 10.94 68.64 0.75 18.62 15 21 O -0.54 -29.88 14.66 -3.52 -0.05 -29.93 15 22 H 0.06 1.27 7.62 -2.39 -0.02 1.25 15 23 H 0.13 1.90 8.14 -2.39 -0.02 1.88 15 24 H 0.06 1.28 7.62 -2.39 -0.02 1.26 15 25 H 0.14 4.35 6.09 -2.91 -0.02 4.33 15 26 H 0.19 5.09 8.06 -2.91 -0.02 5.07 15 27 H 0.12 5.36 6.01 -2.91 -0.02 5.34 15 28 H 0.31 13.56 8.29 -92.71 -0.77 12.79 15 29 H 0.10 3.91 7.54 -2.91 -0.02 3.89 15 Total: -1.00 -63.42 260.49 4.34 -59.08 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: 1.08 Total: 11.14 kcal Atomic # 6 Polarization: -37.60 SS G_CDS: 3.49 Total: -34.11 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.30 Total: -38.76 kcal Atomic # 8 Polarization: -40.73 SS G_CDS: -0.90 Total: -41.63 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 1.69 Total: 42.35 kcal Atomic # 16 Polarization: 3.26 SS G_CDS: -1.32 Total: 1.95 kcal Total: -63.42 4.34 -59.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396340218.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.711 kcal (2) G-P(sol) polarization free energy of solvation -63.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds